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Cow genome map

           
Conread name:
           
Ova1-OVRM10035D03
        

               
Conread position:
               
1-441
               

               
Cow position:
               
chr1:3340539-3340956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
3-429
               

               
Cow position:
               
chr1:75967026-75967438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
3-436
               

               
Cow position:
               
chr1:95050531-95050074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 199
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chr1:6941049-6941484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
3-448
               

               
Cow position:
               
chr1:82338201-82337751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 144
               

               
Conread position:
               
7-438
               

               
Cow position:
               
chr1:29901371-29900948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 121
               

               
Conread position:
               
7-439
               

               
Cow position:
               
chr1:74930120-74929699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 137
               

               
Conread position:
               
7-445
               

               
Cow position:
               
chr1:78795138-78794714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 124
               

               
Conread position:
               
7-448
               

               
Cow position:
               
chr1:52955835-52956283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 38
               

               
Conread position:
               
8-446
               

               
Cow position:
               
chr1:63905881-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 115
               

               
Conread position:
               
8-447
               

               
Cow position:
               
chr1:64251451-64251021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 122
               

               
Conread position:
               
11-447
               

               
Cow position:
               
chr1:41252804-41252382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 32
               

               
Conread position:
               
11-448
               

               
Cow position:
               
chr1:43821996-43822428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
172, 115
               

               
Conread position:
               
11-448
               

               
Cow position:
               
chr1:55429364-55428931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 98
               

               
Conread position:
               
11-448
               

               
Cow position:
               
chr1:102350150-102349721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 110
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chr1:57635047-57635487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 256
               

               
Conread position:
               
22-429
               

               
Cow position:
               
chr1:102826216-102825810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 148
               

               
Conread position:
               
32-447
               

               
Cow position:
               
chr1:6958486-6958897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
38-447
               

               
Cow position:
               
chr1:74947499-74947093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 127
               

               
Conread position:
               
63-448
               

               
Cow position:
               
chr1:6305220-6304839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
118, 9
               

               
Conread position:
               
74-442
               

               
Cow position:
               
chr1:84240543-84240911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
75-448
               

               
Cow position:
               
chr1:45535346-45535732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
104-448
               

               
Cow position:
               
chr1:38544772-38544439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
111-448
               

               
Cow position:
               
chr1:45555047-45555391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
112-448
               

               
Cow position:
               
chr1:81356016-81355680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
122-448
               

               
Cow position:
               
chr1:1165298-1165624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chr1:76470367-76470680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chr1:81869020-81868704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 146
               

               
Conread position:
               
133-448
               

               
Cow position:
               
chr1:59518614-59518947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
135-396
               

               
Cow position:
               
chr1:52506832-52506581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
135-448
               

               
Cow position:
               
chr1:61724316-61723994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 128
               

               
Conread position:
               
136-426
               

               
Cow position:
               
chr1:92437281-92436985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 143
               

               
Conread position:
               
137-448
               

               
Cow position:
               
chr1:54478036-54478354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
138-399
               

               
Cow position:
               
chr1:21835662-21835920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
62, 123
               

               
Conread position:
               
138-448
               

               
Cow position:
               
chr1:53424904-53425201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
139-448
               

               
Cow position:
               
chr1:79278717-79278421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
123, 25
               

               
Conread position:
               
140-439
               

               
Cow position:
               
chr1:4589761-4589460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
141-441
               

               
Cow position:
               
chr1:34685910-34686206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
144-380
               

               
Cow position:
               
chr1:19545378-19545141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
144-431
               

               
Cow position:
               
chr1:71119229-71119530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
146-425
               

               
Cow position:
               
chr1:77462084-77462367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
146-446
               

               
Cow position:
               
chr1:84239383-84239086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
146-448
               

               
Cow position:
               
chr1:8342-8640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
146-448
               

               
Cow position:
               
chr1:79663944-79663648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
148-447
               

               
Cow position:
               
chr1:20384894-20384595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
148-448
               

               
Cow position:
               
chr1:95176657-95176964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
149-448
               

               
Cow position:
               
chr1:45289148-45288846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
153-411
               

               
Cow position:
               
chr1:80555450-80555205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
177, 48
               

               
Conread position:
               
153-416
               

               
Cow position:
               
chr1:92963129-92963393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
153-448
               

               
Cow position:
               
chr1:3137661-3137951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 68
               

               
Conread position:
               
154-395
               

               
Cow position:
               
chr1:36874742-36874986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
12, 82
               

               
Conread position:
               
154-447
               

               
Cow position:
               
chr1:1956597-1956309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
155-392
               

               
Cow position:
               
chr1:95327422-95327181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
45, 168
               

               
Conread position:
               
156-448
               

               
Cow position:
               
chr1:21787056-21787361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
16, 170
               

               
Conread position:
               
157-443
               

               
Cow position:
               
chr1:87072439-87072719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
157-447
               

               
Cow position:
               
chr1:39069218-39068932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
158-437
               

               
Cow position:
               
chr1:100741029-100741304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
159-442
               

               
Cow position:
               
chr1:55146536-55146818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 156
               

               
Conread position:
               
160-446
               

               
Cow position:
               
chr1:53369808-53370108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
160-448
               

               
Cow position:
               
chr1:61392053-61391759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 14
               

               
Conread position:
               
160-448
               

               
Cow position:
               
chr1:68845743-68845459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
102, 10
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr1:1991691-1991394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 173
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr1:52435007-52435297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr1:72012066-72011788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
141, 98
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr1:76019941-76019668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr1:77620287-77620571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr1:101551196-101551489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
162-448
               

               
Cow position:
               
chr1:68619199-68618907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
163-439
               

               
Cow position:
               
chr1:94226809-94226536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 106
               

               
Conread position:
               
163-445
               

               
Cow position:
               
chr1:91066409-91066129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 97
               

               
Conread position:
               
163-446
               

               
Cow position:
               
chr1:43352910-43352631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
99, 30
               

               
Conread position:
               
164-439
               

               
Cow position:
               
chr1:99095103-99095381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
164-444
               

               
Cow position:
               
chr1:8349571-8349297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
165-410
               

               
Cow position:
               
chr1:46940121-46939870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 177
               

               
Conread position:
               
165-443
               

               
Cow position:
               
chr1:20204768-20205050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
165-446
               

               
Cow position:
               
chr1:11873614-11873338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
97, 30
               

               
Conread position:
               
165-446
               

               
Cow position:
               
chr1:82880406-82880669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
165-447
               

               
Cow position:
               
chr1:82504708-82505000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 164
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:4032375-4032657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:4290899-4291191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:20001008-20000723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:24235777-24235494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
97, 36
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:34159573-34159860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 120
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:35162145-35162435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 274
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:48444441-48444169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 90
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:54258308-54258592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:55163663-55163944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 158
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:66430042-66430318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
101, 45
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:70828655-70828928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr1:90868695-90868416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
166-402
               

               
Cow position:
               
chr1:23634158-23633930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
166-436
               

               
Cow position:
               
chr1:31845777-31846038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
166-439
               

               
Cow position:
               
chr1:21572785-21573071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
166-441
               

               
Cow position:
               
chr1:1801886-1802159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
95, 38
               

               
Conread position:
               
166-443
               

               
Cow position:
               
chr1:68912497-68912759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
166-444
               

               
Cow position:
               
chr1:84282803-84283094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 167
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr1:22448842-22448556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr1:53374177-53374458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr1:53622707-53622983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr1:55260688-55260409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
96, 122
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr1:69264564-69264835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 100
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr1:73960442-73960728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
24, 166
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr1:81228589-81228309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
109, 45
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr1:96365416-96365689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
167-395
               

               
Cow position:
               
chr1:732182-731969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
167-448
               

               
Cow position:
               
chr1:45020060-45019776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
80, 94
               

               
Conread position:
               
167-448
               

               
Cow position:
               
chr1:53308649-53308364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 93
               

               
Conread position:
               
170-396
               

               
Cow position:
               
chr1:94211980-94212204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
132, 98
               

               
Conread position:
               
170-447
               

               
Cow position:
               
chr1:37707223-37706946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 162
               

               
Conread position:
               
171-441
               

               
Cow position:
               
chr1:3776867-3776601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
172-429
               

               
Cow position:
               
chr1:56657789-56658040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
172-446
               

               
Cow position:
               
chr1:86113665-86113377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
172-448
               

               
Cow position:
               
chr1:68827157-68826879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 116
               

               
Conread position:
               
172-448
               

               
Cow position:
               
chr1:100770987-100770728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
158, 10
               

               
Conread position:
               
173-448
               

               
Cow position:
               
chr1:1403721-1403456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
173-448
               

               
Cow position:
               
chr1:11914128-11913854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
89, 112
               

               
Conread position:
               
173-448
               

               
Cow position:
               
chr1:63435054-63434781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
174-441
               

               
Cow position:
               
chr1:85596697-85596962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
174-448
               

               
Cow position:
               
chr1:68951382-68951652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
175-430
               

               
Cow position:
               
chr1:5394119-5393864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
127, 85
               

               
Conread position:
               
175-444
               

               
Cow position:
               
chr1:15311619-15311884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
25, 114
               

               
Conread position:
               
175-446
               

               
Cow position:
               
chr1:89485342-89485602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
126, 29
               

               
Conread position:
               
176-392
               

               
Cow position:
               
chr1:98708194-98708410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
176-399
               

               
Cow position:
               
chr1:94875926-94875698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 147
               

               
Conread position:
               
176-411
               

               
Cow position:
               
chr1:49839258-49839493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
176-439
               

               
Cow position:
               
chr1:95687349-95687083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 26
               

               
Conread position:
               
176-446
               

               
Cow position:
               
chr1:93528442-93528722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 267
               

               
Conread position:
               
176-447
               

               
Cow position:
               
chr1:11853938-11853661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 93
               

               
Conread position:
               
176-448
               

               
Cow position:
               
chr1:31934265-31934532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
176-448
               

               
Cow position:
               
chr1:34856877-34856603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
176-448
               

               
Cow position:
               
chr1:53520658-53520936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 93
               

               
Conread position:
               
176-448
               

               
Cow position:
               
chr1:69695257-69694966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 275
               

               
Conread position:
               
176-448
               

               
Cow position:
               
chr1:71045507-71045780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 111
               

               
Conread position:
               
177-439
               

               
Cow position:
               
chr1:28176753-28177026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
85, 238
               

               
Conread position:
               
177-443
               

               
Cow position:
               
chr1:3244603-3244870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
21, 113
               

               
Conread position:
               
177-448
               

               
Cow position:
               
chr1:56477348-56477617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
173, 83
               

               
Conread position:
               
178-429
               

               
Cow position:
               
chr1:4293818-4294064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
178-440
               

               
Cow position:
               
chr1:98594325-98594592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
123, 81
               

               
Conread position:
               
180-448
               

               
Cow position:
               
chr1:56634852-56635123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
16, 83
               

               
Conread position:
               
180-448
               

               
Cow position:
               
chr1:88618348-88618621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
181-401
               

               
Cow position:
               
chr1:20799629-20799864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
183-407
               

               
Cow position:
               
chr1:20287876-20288103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
183-447
               

               
Cow position:
               
chr1:31235175-31234907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 144
               

               
Conread position:
               
184-446
               

               
Cow position:
               
chr1:41696817-41697081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
185-404
               

               
Cow position:
               
chr1:40531348-40531132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
185-448
               

               
Cow position:
               
chr1:26729489-26729743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
117, 75
               

               
Conread position:
               
186-428
               

               
Cow position:
               
chr1:24597414-24597663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
186-445
               

               
Cow position:
               
chr1:64189264-64189523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
187-448
               

               
Cow position:
               
chr1:21508150-21508418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 233
               

               
Conread position:
               
189-431
               

               
Cow position:
               
chr1:55357521-55357278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
189-443
               

               
Cow position:
               
chr1:51818706-51818962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
192-397
               

               
Cow position:
               
chr1:15333650-15333859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
193-448
               

               
Cow position:
               
chr1:43448055-43447803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chr1:24729069-24728815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
68, 55
               

               
Conread position:
               
195-446
               

               
Cow position:
               
chr1:73761580-73761332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
155, 65
               

               
Conread position:
               
195-447
               

               
Cow position:
               
chr1:78809655-78809900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
106, 65
               

               
Conread position:
               
201-448
               

               
Cow position:
               
chr1:34771726-34771478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
100, 86
               

               
Conread position:
               
201-448
               

               
Cow position:
               
chr1:49317735-49317471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 135
               

               
Conread position:
               
203-448
               

               
Cow position:
               
chr1:98461070-98461311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
59, 108
               

               
Conread position:
               
204-435
               

               
Cow position:
               
chr1:45673492-45673730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
205-443
               

               
Cow position:
               
chr1:98558002-98557764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
57, 142
               

               
Conread position:
               
208-448
               

               
Cow position:
               
chr1:74956239-74955992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
54, 114
               

               
Conread position:
               
209-448
               

               
Cow position:
               
chr1:19885170-19885408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 117
               

               
Conread position:
               
216-448
               

               
Cow position:
               
chr1:75382784-75383006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 130
               

               
Conread position:
               
218-431
               

               
Cow position:
               
chr1:32013751-32013963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 42
               

               
Conread position:
               
218-448
               

               
Cow position:
               
chr1:75141801-75142022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
83, 40
               

               
Conread position:
               
219-444
               

               
Cow position:
               
chr1:95654920-95654692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
221-447
               

               
Cow position:
               
chr1:43703211-43703433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
223-445
               

               
Cow position:
               
chr1:94261347-94261558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
224-448
               

               
Cow position:
               
chr1:40192878-40192670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 37
               

               
Conread position:
               
228-408
               

               
Cow position:
               
chr1:51654215-51654399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
228-448
               

               
Cow position:
               
chr1:81470933-81471158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
231-443
               

               
Cow position:
               
chr1:56674322-56674106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
232-448
               

               
Cow position:
               
chr1:724543-724765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 90
               

               
Conread position:
               
233-410
               

               
Cow position:
               
chr1:91039367-91039186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
235-448
               

               
Cow position:
               
chr1:54156929-54156709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
42, 155
               

               
Conread position:
               
239-448
               

               
Cow position:
               
chr1:484650-484442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
239-448
               

               
Cow position:
               
chr1:51684614-51684832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
241-448
               

               
Cow position:
               
chr1:65318399-65318600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
244-448
               

               
Cow position:
               
chr1:20667921-20667717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
254-445
               

               
Cow position:
               
chr1:101632508-101632315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
262-445
               

               
Cow position:
               
chr1:81638238-81638427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
271-448
               

               
Cow position:
               
chr1:23512808-23512634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
271-448
               

               
Cow position:
               
chr1:77683205-77683377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
30, 5
               

               
Conread position:
               
271-448
               

               
Cow position:
               
chr1:97696587-97696772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
272-448
               

               
Cow position:
               
chr1:91811635-91811807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
275-396
               

               
Cow position:
               
chr1:65909377-65909501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
275-448
               

               
Cow position:
               
chr1:41115864-41115690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
275-448
               

               
Cow position:
               
chr1:96081335-96081505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
287-407
               

               
Cow position:
               
chr1:90595692-90595566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
287-445
               

               
Cow position:
               
chr1:29451781-29451943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
287-446
               

               
Cow position:
               
chr1:93228388-93228548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
287-448
               

               
Cow position:
               
chr1:6961770-6961933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
287-448
               

               
Cow position:
               
chr1:64572376-64572540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
289-448
               

               
Cow position:
               
chr1:85550213-85550053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
313-448
               

               
Cow position:
               
chr1:61543030-61542893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr10:668445-668865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr10:32416919-32417338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr10:55098137-55097708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 135
               

               
Conread position:
               
1-446
               

               
Cow position:
               
chr10:61304840-61305258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr10:21081956-21082376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
4-447
               

               
Cow position:
               
chr10:24785677-24786103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 7
               

               
Conread position:
               
4-448
               

               
Cow position:
               
chr10:12314745-12315152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
7-445
               

               
Cow position:
               
chr10:17982722-17983176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 14
               

               
Conread position:
               
7-448
               

               
Cow position:
               
chr10:6172915-6173353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 150
               

               
Conread position:
               
8-444
               

               
Cow position:
               
chr10:15292822-15293257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 224
               

               
Conread position:
               
8-446
               

               
Cow position:
               
chr10:22048807-22049254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 99
               

               
Conread position:
               
11-440
               

               
Cow position:
               
chr10:24277176-24276744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 112
               

               
Conread position:
               
19-448
               

               
Cow position:
               
chr10:21036894-21037304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
260, 24
               

               
Conread position:
               
25-421
               

               
Cow position:
               
chr10:24871472-24871860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
33-448
               

               
Cow position:
               
chr10:17844357-17844762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 125
               

               
Conread position:
               
58-448
               

               
Cow position:
               
chr10:52296089-52296493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 277
               

               
Conread position:
               
65-400
               

               
Cow position:
               
chr10:48378040-48377693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
74-445
               

               
Cow position:
               
chr10:48388645-48388278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
74-448
               

               
Cow position:
               
chr10:20372513-20372129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
94-445
               

               
Cow position:
               
chr10:31266689-31266340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
94-448
               

               
Cow position:
               
chr10:57461005-57461352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
102-447
               

               
Cow position:
               
chr10:34554441-34554097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 184
               

               
Conread position:
               
102-448
               

               
Cow position:
               
chr10:60032917-60032574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 26
               

               
Conread position:
               
116-447
               

               
Cow position:
               
chr10:25699330-25699644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
128-448
               

               
Cow position:
               
chr10:35862556-35862232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chr10:23936160-23936476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 190
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chr10:33867698-33867403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
170, 38
               

               
Conread position:
               
132-446
               

               
Cow position:
               
chr10:19402610-19402932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 159
               

               
Conread position:
               
136-398
               

               
Cow position:
               
chr10:8923616-8923884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 188
               

               
Conread position:
               
139-445
               

               
Cow position:
               
chr10:20505226-20505538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 62
               

               
Conread position:
               
140-448
               

               
Cow position:
               
chr10:15867924-15868247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
140-448
               

               
Cow position:
               
chr10:22472002-22472320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
142-400
               

               
Cow position:
               
chr10:68251264-68251518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
144-438
               

               
Cow position:
               
chr10:720986-721289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 181
               

               
Conread position:
               
144-448
               

               
Cow position:
               
chr10:11009116-11009405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
186, 8
               

               
Conread position:
               
144-448
               

               
Cow position:
               
chr10:60960629-60960930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
9, 125
               

               
Conread position:
               
148-448
               

               
Cow position:
               
chr10:42312605-42312898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
149-427
               

               
Cow position:
               
chr10:61588567-61588287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
149-448
               

               
Cow position:
               
chr10:42745607-42745913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 155
               

               
Conread position:
               
150-448
               

               
Cow position:
               
chr10:29165969-29166275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
16, 180
               

               
Conread position:
               
151-448
               

               
Cow position:
               
chr10:15318583-15318880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 5
               

               
Conread position:
               
153-443
               

               
Cow position:
               
chr10:14976093-14975804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
154-429
               

               
Cow position:
               
chr10:58556892-58557173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
155-447
               

               
Cow position:
               
chr10:2849055-2849344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
51, 119
               

               
Conread position:
               
155-448
               

               
Cow position:
               
chr10:10720976-10720677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 160
               

               
Conread position:
               
157-448
               

               
Cow position:
               
chr10:15872160-15871880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 103
               

               
Conread position:
               
157-448
               

               
Cow position:
               
chr10:54476814-54477098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
157-448
               

               
Cow position:
               
chr10:57059572-57059286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
158-402
               

               
Cow position:
               
chr10:9342035-9341783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
43, 188
               

               
Conread position:
               
158-436
               

               
Cow position:
               
chr10:14098617-14098339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
160-448
               

               
Cow position:
               
chr10:6516482-6516186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 166
               

               
Conread position:
               
160-448
               

               
Cow position:
               
chr10:20132822-20132533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
160-448
               

               
Cow position:
               
chr10:21448188-21447914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 91
               

               
Conread position:
               
161-439
               

               
Cow position:
               
chr10:1976614-1976325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 125
               

               
Conread position:
               
161-440
               

               
Cow position:
               
chr10:37528899-37528615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 115
               

               
Conread position:
               
161-445
               

               
Cow position:
               
chr10:50200414-50200704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr10:37444509-37444222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr10:50359621-50359912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
105, 168
               

               
Conread position:
               
162-448
               

               
Cow position:
               
chr10:35903237-35902960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
163-428
               

               
Cow position:
               
chr10:24547967-24548235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 124
               

               
Conread position:
               
163-439
               

               
Cow position:
               
chr10:6407664-6407942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
39, 162
               

               
Conread position:
               
163-439
               

               
Cow position:
               
chr10:20735415-20735688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
163-440
               

               
Cow position:
               
chr10:35887694-35887415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
165-397
               

               
Cow position:
               
chr10:65132669-65132905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
165-406
               

               
Cow position:
               
chr10:25006280-25006522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 104
               

               
Conread position:
               
165-431
               

               
Cow position:
               
chr10:60936663-60936920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 95
               

               
Conread position:
               
165-444
               

               
Cow position:
               
chr10:62286262-62286548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 156
               

               
Conread position:
               
165-447
               

               
Cow position:
               
chr10:28671113-28670823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr10:21461951-21462242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr10:31527704-31527970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr10:49045554-49045841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr10:65424201-65423908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 169
               

               
Conread position:
               
166-393
               

               
Cow position:
               
chr10:50016281-50016072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chr10:7737502-7737748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chr10:31374395-31374140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 166
               

               
Conread position:
               
166-439
               

               
Cow position:
               
chr10:13050577-13050306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
96, 38
               

               
Conread position:
               
166-439
               

               
Cow position:
               
chr10:46226798-46227079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 162
               

               
Conread position:
               
166-441
               

               
Cow position:
               
chr10:9083010-9083285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
166-446
               

               
Cow position:
               
chr10:26731938-26731652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
30, 160
               

               
Conread position:
               
166-446
               

               
Cow position:
               
chr10:56475180-56475459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr10:13311443-13311731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr10:31466455-31466742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
32, 181
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr10:31791549-31791264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr10:35767367-35767089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr10:40421134-40420851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 159
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr10:47165589-47165865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr10:54948410-54948142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
136, 21
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr10:55122505-55122802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
96, 35
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr10:59675541-59675259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
96, 48
               

               
Conread position:
               
167-444
               

               
Cow position:
               
chr10:39110283-39110019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
167-445
               

               
Cow position:
               
chr10:24916281-24916007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
167-448
               

               
Cow position:
               
chr10:1087732-1088025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
114, 101
               

               
Conread position:
               
167-448
               

               
Cow position:
               
chr10:39387171-39387451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
167-448
               

               
Cow position:
               
chr10:52046578-52046861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
168-437
               

               
Cow position:
               
chr10:6986166-6986432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
168-446
               

               
Cow position:
               
chr10:59664251-59663979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
168-448
               

               
Cow position:
               
chr10:25149605-25149894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
169-448
               

               
Cow position:
               
chr10:8922984-8923275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 159
               

               
Conread position:
               
171-448
               

               
Cow position:
               
chr10:2449068-2449346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
172-416
               

               
Cow position:
               
chr10:45729205-45728971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
172-438
               

               
Cow position:
               
chr10:38133766-38133496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 151
               

               
Conread position:
               
172-445
               

               
Cow position:
               
chr10:54799335-54799609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 97
               

               
Conread position:
               
172-448
               

               
Cow position:
               
chr10:17175750-17176031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
172-448
               

               
Cow position:
               
chr10:24870882-24871160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
172-448
               

               
Cow position:
               
chr10:35905113-35904830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 235
               

               
Conread position:
               
172-448
               

               
Cow position:
               
chr10:40106834-40107100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 87
               

               
Conread position:
               
173-439
               

               
Cow position:
               
chr10:43438588-43438863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
173-444
               

               
Cow position:
               
chr10:54963000-54962728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
173-448
               

               
Cow position:
               
chr10:3998627-3998901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
173-448
               

               
Cow position:
               
chr10:49568922-49569192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
176-448
               

               
Cow position:
               
chr10:29279166-29279441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
86, 24
               

               
Conread position:
               
178-443
               

               
Cow position:
               
chr10:37512525-37512254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 147
               

               
Conread position:
               
178-447
               

               
Cow position:
               
chr10:2462753-2462491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
219, 23
               

               
Conread position:
               
178-448
               

               
Cow position:
               
chr10:5543527-5543253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 164
               

               
Conread position:
               
178-448
               

               
Cow position:
               
chr10:9287790-9288047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
179-446
               

               
Cow position:
               
chr10:5607367-5607638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
179-448
               

               
Cow position:
               
chr10:48462617-48462344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
180-435
               

               
Cow position:
               
chr10:49456349-49456105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
180-438
               

               
Cow position:
               
chr10:64878270-64878004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
180-445
               

               
Cow position:
               
chr10:39398793-39398524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
181-448
               

               
Cow position:
               
chr10:18041911-18042175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
181-448
               

               
Cow position:
               
chr10:63276117-63276389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
182-446
               

               
Cow position:
               
chr10:24133093-24132826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
182-448
               

               
Cow position:
               
chr10:2304649-2304387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
119, 39
               

               
Conread position:
               
182-448
               

               
Cow position:
               
chr10:52113938-52113674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
184-448
               

               
Cow position:
               
chr10:28105343-28105084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
184-448
               

               
Cow position:
               
chr10:43288140-43287873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
12, 114
               

               
Conread position:
               
184-448
               

               
Cow position:
               
chr10:43508728-43508986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
185-446
               

               
Cow position:
               
chr10:17863314-17863579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 140
               

               
Conread position:
               
185-448
               

               
Cow position:
               
chr10:29589112-29588844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
10, 86
               

               
Conread position:
               
186-443
               

               
Cow position:
               
chr10:20997545-20997294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
188-445
               

               
Cow position:
               
chr10:8169991-8170242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
188-448
               

               
Cow position:
               
chr10:59844191-59843919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
189-448
               

               
Cow position:
               
chr10:11221444-11221698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
7, 67
               

               
Conread position:
               
191-418
               

               
Cow position:
               
chr10:58690640-58690860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
193-448
               

               
Cow position:
               
chr10:24561248-24560992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
195-405
               

               
Cow position:
               
chr10:48257538-48257328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
197-446
               

               
Cow position:
               
chr10:22341308-22341569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
69, 156
               

               
Conread position:
               
205-446
               

               
Cow position:
               
chr10:31779517-31779275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
208-448
               

               
Cow position:
               
chr10:32030070-32029837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
94, 52
               

               
Conread position:
               
217-448
               

               
Cow position:
               
chr10:25882189-25882412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
113, 49
               

               
Conread position:
               
220-419
               

               
Cow position:
               
chr10:48317190-48316990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
220-448
               

               
Cow position:
               
chr10:45379242-45379009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
223-448
               

               
Cow position:
               
chr10:6435828-6436055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
226-447
               

               
Cow position:
               
chr10:46493231-46493000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
228-402
               

               
Cow position:
               
chr10:38223827-38223651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
228-448
               

               
Cow position:
               
chr10:47412334-47412108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
230-448
               

               
Cow position:
               
chr10:33733093-33732871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
232-445
               

               
Cow position:
               
chr10:38739330-38739538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
233-444
               

               
Cow position:
               
chr10:31000822-31000596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 217
               

               
Conread position:
               
244-448
               

               
Cow position:
               
chr10:39304062-39303853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
245-442
               

               
Cow position:
               
chr10:28222719-28222912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
259-447
               

               
Cow position:
               
chr10:4183993-4184190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 65
               

               
Conread position:
               
261-448
               

               
Cow position:
               
chr10:4109399-4109588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
262-448
               

               
Cow position:
               
chr10:68926963-68927147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
266-447
               

               
Cow position:
               
chr10:51942602-51942784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 33
               

               
Conread position:
               
275-445
               

               
Cow position:
               
chr10:35653484-35653663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
275-448
               

               
Cow position:
               
chr10:41254750-41254575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
275-448
               

               
Cow position:
               
chr10:64839195-64839015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 171
               

               
Conread position:
               
276-443
               

               
Cow position:
               
chr10:19549667-19549497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
276-445
               

               
Cow position:
               
chr10:32834639-32834815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
280-448
               

               
Cow position:
               
chr10:4164093-4164265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
287-445
               

               
Cow position:
               
chr10:48499936-48500089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
6, 35
               

               
Conread position:
               
287-446
               

               
Cow position:
               
chr10:44764672-44764510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
288-448
               

               
Cow position:
               
chr10:2537928-2538091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
292-448
               

               
Cow position:
               
chr10:2202287-2202126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
315-448
               

               
Cow position:
               
chr10:6663886-6664029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
15, 128
               

               
Conread position:
               
320-448
               

               
Cow position:
               
chr10:15309532-15309408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr11:48933025-48932585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr11:67600330-67600786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 128
               

               
Conread position:
               
3-448
               

               
Cow position:
               
chr11:22932385-22931969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
3-448
               

               
Cow position:
               
chr11:49935209-49934729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
4-407
               

               
Cow position:
               
chr11:21819866-21819484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
4-436
               

               
Cow position:
               
chr11:62881058-62880636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 13
               

               
Conread position:
               
4-448
               

               
Cow position:
               
chr11:34112850-34113266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 115
               

               
Conread position:
               
5-431
               

               
Cow position:
               
chr11:9222153-9221740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
6-448
               

               
Cow position:
               
chr11:33754329-33753903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 12
               

               
Conread position:
               
7-448
               

               
Cow position:
               
chr11:42003409-42002946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 199
               

               
Conread position:
               
10-448
               

               
Cow position:
               
chr11:30708086-30708508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 8
               

               
Conread position:
               
11-448
               

               
Cow position:
               
chr11:43430866-43430452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
12-431
               

               
Cow position:
               
chr11:77240956-77241356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 119
               

               
Conread position:
               
23-448
               

               
Cow position:
               
chr11:49152546-49152951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 95
               

               
Conread position:
               
33-431
               

               
Cow position:
               
chr11:37347065-37347464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 111
               

               
Conread position:
               
35-447
               

               
Cow position:
               
chr11:30110571-30110963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 96
               

               
Conread position:
               
72-448
               

               
Cow position:
               
chr11:48474337-48474705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 17
               

               
Conread position:
               
128-446
               

               
Cow position:
               
chr11:21844454-21844133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
134, 73
               

               
Conread position:
               
129-373
               

               
Cow position:
               
chr11:31885199-31885445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
130-445
               

               
Cow position:
               
chr11:62965871-62965549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
130-446
               

               
Cow position:
               
chr11:55761562-55761868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
132, 31
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chr11:37068618-37068315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
132-445
               

               
Cow position:
               
chr11:41577318-41577021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
170, 20
               

               
Conread position:
               
136-399
               

               
Cow position:
               
chr11:57111620-57111354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
138-448
               

               
Cow position:
               
chr11:68910158-68909844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
139-448
               

               
Cow position:
               
chr11:8148203-8147897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
140-393
               

               
Cow position:
               
chr11:65430752-65431005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
140-448
               

               
Cow position:
               
chr11:62979172-62979492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
142-448
               

               
Cow position:
               
chr11:46746331-46746633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 27
               

               
Conread position:
               
144-445
               

               
Cow position:
               
chr11:47586649-47586351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
144-448
               

               
Cow position:
               
chr11:2309571-2309874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
144-448
               

               
Cow position:
               
chr11:42358823-42359116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
146-447
               

               
Cow position:
               
chr11:3282755-3283030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 70
               

               
Conread position:
               
148-445
               

               
Cow position:
               
chr11:58103077-58102776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 178
               

               
Conread position:
               
148-448
               

               
Cow position:
               
chr11:41549629-41549332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
153, 28
               

               
Conread position:
               
148-448
               

               
Cow position:
               
chr11:58990207-58990504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
149-447
               

               
Cow position:
               
chr11:23232815-23232515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
149-448
               

               
Cow position:
               
chr11:32609692-32610000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
150-447
               

               
Cow position:
               
chr11:18630155-18630459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 135
               

               
Conread position:
               
151-445
               

               
Cow position:
               
chr11:18572504-18572800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
158-448
               

               
Cow position:
               
chr11:12111759-12111451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 133
               

               
Conread position:
               
159-448
               

               
Cow position:
               
chr11:11125372-11125665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 111
               

               
Conread position:
               
160-431
               

               
Cow position:
               
chr11:30879390-30879661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
160-433
               

               
Cow position:
               
chr11:9837386-9837110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
160-440
               

               
Cow position:
               
chr11:83066206-83066491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
41, 128
               

               
Conread position:
               
161-431
               

               
Cow position:
               
chr11:49105771-49106043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr11:17831516-17831219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 183
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr11:27386626-27386337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 13
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr11:42083197-42083474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 13
               

               
Conread position:
               
162-448
               

               
Cow position:
               
chr11:41986331-41986044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
163-393
               

               
Cow position:
               
chr11:73478337-73478566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
114, 38
               

               
Conread position:
               
163-431
               

               
Cow position:
               
chr11:26535488-26535758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
8, 160
               

               
Conread position:
               
163-442
               

               
Cow position:
               
chr11:58459844-58460107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
163-443
               

               
Cow position:
               
chr11:42836249-42835960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
163-446
               

               
Cow position:
               
chr11:3833634-3833359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
163-448
               

               
Cow position:
               
chr11:54334048-54334330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
165-396
               

               
Cow position:
               
chr11:53719661-53719893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 119
               

               
Conread position:
               
165-443
               

               
Cow position:
               
chr11:4207014-4207308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
33, 136
               

               
Conread position:
               
165-443
               

               
Cow position:
               
chr11:35579969-35580257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr11:26483435-26483714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 95
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr11:53778328-53778618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 104
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr11:63847567-63847848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
97, 35
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr11:70745820-70745535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
97, 36
               

               
Conread position:
               
165-448
               

               
Cow position:
               
chr11:81174606-81174888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 111
               

               
Conread position:
               
166-427
               

               
Cow position:
               
chr11:43913939-43914197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
35, 40
               

               
Conread position:
               
166-431
               

               
Cow position:
               
chr11:4384342-4384605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
166-443
               

               
Cow position:
               
chr11:65409441-65409156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 165
               

               
Conread position:
               
166-446
               

               
Cow position:
               
chr11:5032060-5031775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 158
               

               
Conread position:
               
166-446
               

               
Cow position:
               
chr11:8841024-8840747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 158
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:3393493-3393207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:7589907-7590194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 158
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:10095059-10095345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
35, 160
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:17112910-17112628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:40792984-40792703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:43361084-43360776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:53130529-53130815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 116
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:59872643-59872932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 160
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:71168861-71168588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
167-402
               

               
Cow position:
               
chr11:65495610-65495370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 94
               

               
Conread position:
               
168-448
               

               
Cow position:
               
chr11:80530089-80530368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
168-448
               

               
Cow position:
               
chr11:85764669-85764937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
171-430
               

               
Cow position:
               
chr11:75748157-75748419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 114
               

               
Conread position:
               
171-442
               

               
Cow position:
               
chr11:77207770-77208038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
172-406
               

               
Cow position:
               
chr11:74929503-74929743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
94, 142
               

               
Conread position:
               
172-431
               

               
Cow position:
               
chr11:10388874-10388620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
172-443
               

               
Cow position:
               
chr11:24967188-24967450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
172-445
               

               
Cow position:
               
chr11:48901355-48901084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
172-445
               

               
Cow position:
               
chr11:68570949-68570670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
172-447
               

               
Cow position:
               
chr11:51044214-51043927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
172-448
               

               
Cow position:
               
chr11:53147817-53147531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
90, 127
               

               
Conread position:
               
173-396
               

               
Cow position:
               
chr11:18509285-18509067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
173-447
               

               
Cow position:
               
chr11:6154136-6154410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
89, 131
               

               
Conread position:
               
173-448
               

               
Cow position:
               
chr11:33341422-33341143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 63
               

               
Conread position:
               
173-448
               

               
Cow position:
               
chr11:58588067-58588348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 152
               

               
Conread position:
               
175-445
               

               
Cow position:
               
chr11:8105508-8105784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
176-396
               

               
Cow position:
               
chr11:75355336-75355558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
176-442
               

               
Cow position:
               
chr11:73924832-73924567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
176-443
               

               
Cow position:
               
chr11:6400345-6400073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
86, 147
               

               
Conread position:
               
176-446
               

               
Cow position:
               
chr11:17278935-17278672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
176-447
               

               
Cow position:
               
chr11:13043410-13043145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
176-448
               

               
Cow position:
               
chr11:84385917-84385635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
178-442
               

               
Cow position:
               
chr11:71455516-71455788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
23, 217
               

               
Conread position:
               
180-448
               

               
Cow position:
               
chr11:38810620-38810347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
19, 259
               

               
Conread position:
               
181-448
               

               
Cow position:
               
chr11:24584911-24585183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
181-448
               

               
Cow position:
               
chr11:34032464-34032200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
183-448
               

               
Cow position:
               
chr11:30596730-30596995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
184-439
               

               
Cow position:
               
chr11:62045133-62045391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
185-447
               

               
Cow position:
               
chr11:63482690-63482425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
193-448
               

               
Cow position:
               
chr11:75480283-75480018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
6, 94
               

               
Conread position:
               
195-445
               

               
Cow position:
               
chr11:63516570-63516826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
67, 128
               

               
Conread position:
               
195-448
               

               
Cow position:
               
chr11:66188575-66188315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
195-448
               

               
Cow position:
               
chr11:77128415-77128662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
106, 64
               

               
Conread position:
               
200-443
               

               
Cow position:
               
chr11:2083899-2084140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
102, 60
               

               
Conread position:
               
205-445
               

               
Cow position:
               
chr11:62808892-62808653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
206-448
               

               
Cow position:
               
chr11:82940860-82940617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 57
               

               
Conread position:
               
214-448
               

               
Cow position:
               
chr11:32436094-32436336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
48, 227
               

               
Conread position:
               
215-446
               

               
Cow position:
               
chr11:33348418-33348187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 61
               

               
Conread position:
               
218-448
               

               
Cow position:
               
chr11:4663269-4663045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
218-448
               

               
Cow position:
               
chr11:25620626-25620395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
220-443
               

               
Cow position:
               
chr11:18341267-18341043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
42, 104
               

               
Conread position:
               
229-431
               

               
Cow position:
               
chr11:82108107-82107908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 55
               

               
Conread position:
               
229-448
               

               
Cow position:
               
chr11:23586416-23586640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
229-448
               

               
Cow position:
               
chr11:39462398-39462625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
230-446
               

               
Cow position:
               
chr11:36238563-36238780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
230-448
               

               
Cow position:
               
chr11:61859118-61858901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
232-448
               

               
Cow position:
               
chr11:52983474-52983677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
237-446
               

               
Cow position:
               
chr11:65607905-65607692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
238-447
               

               
Cow position:
               
chr11:36286488-36286696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
240-448
               

               
Cow position:
               
chr11:36672259-36672042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 158
               

               
Conread position:
               
241-448
               

               
Cow position:
               
chr11:71493068-71492858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
243-448
               

               
Cow position:
               
chr11:19592203-19591993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 164
               

               
Conread position:
               
244-438
               

               
Cow position:
               
chr11:33364137-33364336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
244-444
               

               
Cow position:
               
chr11:38577977-38577777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
254-448
               

               
Cow position:
               
chr11:51729094-51729288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 66
               

               
Conread position:
               
257-448
               

               
Cow position:
               
chr11:21438022-21438210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
261-448
               

               
Cow position:
               
chr11:57171016-57170828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
271-447
               

               
Cow position:
               
chr11:71501310-71501131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
271-448
               

               
Cow position:
               
chr11:48042215-48042033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
275-448
               

               
Cow position:
               
chr11:7394968-7395139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
26, 81
               
275-448UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr11:37804728-37804552 (view  custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
26, 46
               
275-448UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:53511908-53512089 (view  custom track)

               
               
               
Alignm length:
183

               
               
               
Alignm identity:
134

               
               
               
Alignm E-value:
1e-23

               
               
               
Alignm gaps (pig, cow):
26, 166
279-448UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:70086155-70086336 (view  custom track)

               
               
               
Alignm length:
183

               
               
               
Alignm identity:
139

               
               
               
Alignm E-value:
2e-25

               
               
               
Alignm gaps (pig, cow):
22, 168

               
               
               Conread position:287-396
               
               
               Cow position:chr11:29786767-29786655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:287-439
               
               
               Cow position:chr11:65843255-65843101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:287-448
               
               
               Cow position:chr11:8545174-8545015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:287-448
               
               
               Cow position:chr11:40479016-40478851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:288-448
               
               
               Cow position:chr11:51626803-51626966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):45, 148

               
               
               Conread position:288-448
               
               
               Cow position:chr11:63435357-63435523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:290-448
               
               
               Cow position:chr11:85703548-85703704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:291-446
               
               
               Cow position:chr11:21428151-21427993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:291-448
               
               
               Cow position:chr11:6202289-6202444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:291-448
               
               
               Cow position:chr11:63499481-63499322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 111

               
               
               Conread position:297-447
               
               
               Cow position:chr11:65435703-65435855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:300-444
               
               
               Cow position:chr11:83925899-83926046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:301-448
               
               
               Cow position:chr11:49057256-49057405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:2-445
               
               
               Cow position:chr12:28650486-28650935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 203

               
               
               Conread position:3-448
               
               
               Cow position:chr12:7001039-7000622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:3-448
               
               
               Cow position:chr12:8869326-8868894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:7-446
               
               
               Cow position:chr12:5707691-5708084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):323, 11

               
               
               Conread position:8-442
               
               
               Cow position:chr12:6210594-6210183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 17

               
               
               Conread position:8-448
               
               
               Cow position:chr12:28582939-28582523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 73

               
               
               Conread position:41-390
               
               
               Cow position:chr12:1848949-1848611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 26

               
               
               Conread position:57-448
               
               
               Cow position:chr12:37994142-37993751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 262

               
               
               Conread position:70-393
               
               
               Cow position:chr12:29694424-29694120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):231, 56

               
               
               Conread position:70-448
               
               
               Cow position:chr12:34006899-34007288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:76-448
               
               
               Cow position:chr12:6411124-6410754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:103-416
               
               
               Cow position:chr12:31841073-31841387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 94

               
               
               Conread position:114-447
               
               
               Cow position:chr12:35771396-35771041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 304

               
               
               Conread position:115-438
               
               
               Cow position:chr12:32391488-32391819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:116-420
               
               
               Cow position:chr12:1444096-1443787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:122-448
               
               
               Cow position:chr12:8943567-8943243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:132-444
               
               
               Cow position:chr12:24032672-24032982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:134-384
               
               
               Cow position:chr12:4134329-4134588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 133

               
               
               Conread position:140-415
               
               
               Cow position:chr12:2805369-2805100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:146-448
               
               
               Cow position:chr12:34466321-34466023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:149-446
               
               
               Cow position:chr12:40110064-40110361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:149-447
               
               
               Cow position:chr12:25561049-25561350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:150-448
               
               
               Cow position:chr12:12304079-12304368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 62

               
               
               Conread position:151-448
               
               
               Cow position:chr12:24107866-24107564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 118

               
               
               Conread position:152-439
               
               
               Cow position:chr12:44518057-44517764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:153-448
               
               
               Cow position:chr12:3510249-3510541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:160-448
               
               
               Cow position:chr12:19664822-19664551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):158, 14

               
               
               Conread position:161-398
               
               
               Cow position:chr12:12017568-12017809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 209

               
               
               Conread position:161-448
               
               
               Cow position:chr12:6241001-6241300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 166

               
               
               Conread position:162-438
               
               
               Cow position:chr12:33323805-33323525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):100, 161

               
               
               Conread position:162-445
               
               
               Cow position:chr12:22047161-22047448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:163-448
               
               
               Cow position:chr12:30805547-30805834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 102

               
               
               Conread position:163-448
               
               
               Cow position:chr12:44596120-44595829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:164-443
               
               
               Cow position:chr12:31429863-31429592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):137, 12

               
               
               Conread position:165-419
               
               
               Cow position:chr12:5800734-5800983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:165-444
               
               
               Cow position:chr12:17495496-17495231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:165-446
               
               
               Cow position:chr12:30753423-30753699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:165-448
               
               
               Cow position:chr12:2711188-2711479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 104

               
               
               Conread position:166-364
               
               
               Cow position:chr12:5134836-5135038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:166-406
               
               
               Cow position:chr12:34385817-34385574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:166-447
               
               
               Cow position:chr12:20326468-20326754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:166-448
               
               
               Cow position:chr12:4116202-4116470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):135, 73

               
               
               Conread position:166-448
               
               
               Cow position:chr12:17881569-17881842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:166-448
               
               
               Cow position:chr12:29995765-29995481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:166-448
               
               
               Cow position:chr12:30437948-30438221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):135, 90

               
               
               Conread position:166-448
               
               
               Cow position:chr12:31959590-31959867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:166-448
               
               
               Cow position:chr12:44905334-44905613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 193

               
               
               Conread position:167-444
               
               
               Cow position:chr12:29484193-29483909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:168-396
               
               
               Cow position:chr12:9414067-9413853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):162, 27

               
               
               Conread position:168-396
               
               
               Cow position:chr12:34473914-34473695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:168-406
               
               
               Cow position:chr12:47928913-47929152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:170-445
               
               
               Cow position:chr12:7977748-7978018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:171-393
               
               
               Cow position:chr12:40270384-40270166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:171-438
               
               
               Cow position:chr12:5714331-5714601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 115

               
               
               Conread position:171-446
               
               
               Cow position:chr12:11835944-11836213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:172-444
               
               
               Cow position:chr12:19715324-19715059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):178, 88

               
               
               Conread position:172-445
               
               
               Cow position:chr12:2286284-2286561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 152

               
               
               Conread position:172-447
               
               
               Cow position:chr12:42602533-42602263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:172-448
               
               
               Cow position:chr12:5905760-5906037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):29, 104

               
               
               Conread position:172-448
               
               
               Cow position:chr12:42181438-42181148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:173-447
               
               
               Cow position:chr12:42254362-42254647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 274

               
               
               Conread position:176-445
               
               
               Cow position:chr12:31532694-31532422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):154, 28

               
               
               Conread position:176-448
               
               
               Cow position:chr12:3950644-3950364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):20, 198

               
               
               Conread position:176-448
               
               
               Cow position:chr12:9914496-9914770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:179-447
               
               
               Cow position:chr12:3039224-3039491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:182-429
               
               
               Cow position:chr12:37733064-37732818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:182-437
               
               
               Cow position:chr12:37727860-37728115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:184-442
               
               
               Cow position:chr12:41214603-41214346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:187-448
               
               
               Cow position:chr12:36501235-36500967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:188-437
               
               
               Cow position:chr12:25320642-25320892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:189-447
               
               
               Cow position:chr12:9482579-9482325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:191-448
               
               
               Cow position:chr12:18943921-18943677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):110, 69

               
               
               Conread position:195-448
               
               
               Cow position:chr12:30662223-30661969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:200-431
               
               
               Cow position:chr12:17702501-17702261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):62, 124

               
               
               Conread position:205-445
               
               
               Cow position:chr12:46333099-46333326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:207-445
               
               
               Cow position:chr12:4182957-4182713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 118

               
               
               Conread position:217-446
               
               
               Cow position:chr12:24211163-24211392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):7, 100

               
               
               Conread position:230-448
               
               
               Cow position:chr12:30476239-30476463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:232-447
               
               
               Cow position:chr12:13996271-13996044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):30, 157

               
               
               Conread position:232-448
               
               
               Cow position:chr12:15162914-15163121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:235-446
               
               
               Cow position:chr12:38512075-38511857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:235-448
               
               
               Cow position:chr12:38454685-38454890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 48

               
               
               Conread position:239-448
               
               
               Cow position:chr12:3906239-3906455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:239-448
               
               
               Cow position:chr12:18964158-18963947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:243-431
               
               
               Cow position:chr12:44559361-44559553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:243-442
               
               
               Cow position:chr12:18021368-18021567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:253-447
               
               
               Cow position:chr12:33851140-33851341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 61

               
               
               Conread position:270-448
               
               
               Cow position:chr12:33976002-33976180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:272-447
               
               
               Cow position:chr12:13643041-13643214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:275-445
               
               
               Cow position:chr12:30227422-30227252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:275-448
               
               
               Cow position:chr12:25452638-25452466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:275-448
               
               
               Cow position:chr12:29921975-29921804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:287-446
               
               
               Cow position:chr12:10491090-10491251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:287-448
               
               
               Cow position:chr12:38774422-38774262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:292-448
               
               
               Cow position:chr12:23916665-23916827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:292-448
               
               
               Cow position:chr12:25340336-25340501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 138

               
               
               Conread position:294-448
               
               
               Cow position:chr12:9894608-9894763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:296-445
               
               
               Cow position:chr12:3623520-3623672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 139

               
               
               Conread position:297-448
               
               
               Cow position:chr12:25188016-25188167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:300-443
               
               
               Cow position:chr12:42233888-42234032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 134

               
               
               Conread position:329-448
               
               
               Cow position:chr12:7110060-7110178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 77

               
               
               Conread position:1-395
               
               
               Cow position:chr13:48945081-48944689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:1-448
               
               
               Cow position:chr13:43594706-43595143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:1-448
               
               
               Cow position:chr13:48251594-48252008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:3-447
               
               
               Cow position:chr13:42201040-42200586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 272

               
               
               Conread position:4-436
               
               
               Cow position:chr13:562756-563165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:307
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):8, 63

               
               
               Conread position:4-447
               
               
               Cow position:chr13:60330154-60329725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 123

               
               
               Conread position:7-438
               
               
               Cow position:chr13:16344080-16343658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 95

               
               
               Conread position:7-443
               
               
               Cow position:chr13:17970624-17971060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 255

               
               
               Conread position:9-448
               
               
               Cow position:chr13:46736592-46736181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 100

               
               
               Conread position:19-393
               
               
               Cow position:chr13:26261386-26261778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 317

               
               
               Conread position:53-448
               
               
               Cow position:chr13:15974993-15974584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 228

               
               
               Conread position:54-439
               
               
               Cow position:chr13:5658369-5658753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:62-446
               
               
               Cow position:chr13:40491565-40491183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):200, 61

               
               
               Conread position:91-444
               
               
               Cow position:chr13:45726218-45725865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):53, 151

               
               
               Conread position:116-387
               
               
               Cow position:chr13:21210163-21209887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:129-448
               
               
               Cow position:chr13:11954828-11955149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):172, 56

               
               
               Conread position:131-416
               
               
               Cow position:chr13:2339714-2339433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:131-445
               
               
               Cow position:chr13:1780118-1779798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:131-448
               
               
               Cow position:chr13:23166814-23167135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 44

               
               
               Conread position:136-448
               
               
               Cow position:chr13:52879690-52879378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 65

               
               
               Conread position:138-448
               
               
               Cow position:chr13:2414302-2413995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 12

               
               
               Conread position:140-416
               
               
               Cow position:chr13:4664585-4664868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):63, 149

               
               
               Conread position:147-448
               
               
               Cow position:chr13:52285084-52284774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 113

               
               
               Conread position:148-448
               
               
               Cow position:chr13:9974802-9975108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:150-448
               
               
               Cow position:chr13:41253881-41253587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:155-446
               
               
               Cow position:chr13:16015068-16014781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):41, 106

               
               
               Conread position:155-448
               
               
               Cow position:chr13:43762426-43762134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:160-447
               
               
               Cow position:chr13:11260507-11260235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:160-448
               
               
               Cow position:chr13:6835557-6835828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):141, 41

               
               
               Conread position:160-448
               
               
               Cow position:chr13:7663175-7663456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:161-443
               
               
               Cow position:chr13:34052349-34052618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:162-394
               
               
               Cow position:chr13:51528192-51528422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:162-437
               
               
               Cow position:chr13:44202243-44201977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:163-394
               
               
               Cow position:chr13:32017270-32017506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):98, 167

               
               
               Conread position:163-447
               
               
               Cow position:chr13:25537894-25537590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 290

               
               
               Conread position:163-448
               
               
               Cow position:chr13:11096421-11096145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):139, 29

               
               
               Conread position:163-448
               
               
               Cow position:chr13:26479961-26480244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:163-448
               
               
               Cow position:chr13:36771169-36771458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):25, 100

               
               
               Conread position:165-406
               
               
               Cow position:chr13:45353293-45353051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:165-443
               
               
               Cow position:chr13:4038131-4037864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:165-444
               
               
               Cow position:chr13:47313154-47312887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):136, 33

               
               
               Conread position:165-447
               
               
               Cow position:chr13:18244107-18243829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr13:9142533-9142245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):164, 35

               
               
               Conread position:165-448
               
               
               Cow position:chr13:12448739-12449022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:165-448
               
               
               Cow position:chr13:17158615-17158910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):33, 171

               
               
               Conread position:165-448
               
               
               Cow position:chr13:25695517-25695802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr13:34728588-34728881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:165-448
               
               
               Cow position:chr13:37516885-37517176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:165-448
               
               
               Cow position:chr13:60974326-60974041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:166-279
               
               
               Cow position:chr13:47599618-47599505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-429
               
               
               Cow position:chr13:20378091-20378354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:166-439
               
               
               Cow position:chr13:20893392-20893662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:166-443
               
               
               Cow position:chr13:38562194-38561910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:166-445
               
               
               Cow position:chr13:19138687-19138413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:166-445
               
               
               Cow position:chr13:23269963-23270240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:166-446
               
               
               Cow position:chr13:2774371-2774099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):136, 26

               
               
               Conread position:166-446
               
               
               Cow position:chr13:6153529-6153816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 158

               
               
               Conread position:166-446
               
               
               Cow position:chr13:18166980-18166700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:166-446
               
               
               Cow position:chr13:21287840-21288117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:166-448
               
               
               Cow position:chr13:5713544-5713269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:166-448
               
               
               Cow position:chr13:10988824-10989108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:166-448
               
               
               Cow position:chr13:12875735-12876009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:166-448
               
               
               Cow position:chr13:15446296-15446007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:166-448
               
               
               Cow position:chr13:19178526-19178238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:166-448
               
               
               Cow position:chr13:21276105-21275825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:166-448
               
               
               Cow position:chr13:24754134-24753853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:166-448
               
               
               Cow position:chr13:32283377-32283094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:166-448
               
               
               Cow position:chr13:44626630-44626334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 259

               
               
               Conread position:167-439
               
               
               Cow position:chr13:25248895-25249183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:167-446
               
               
               Cow position:chr13:1042707-1043001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 163

               
               
               Conread position:167-448
               
               
               Cow position:chr13:13766015-13765752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):183, 33

               
               
               Conread position:167-448
               
               
               Cow position:chr13:37382060-37381767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):34, 280

               
               
               Conread position:168-446
               
               
               Cow position:chr13:5752175-5752460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:168-446
               
               
               Cow position:chr13:52585773-52586069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):98, 122

               
               
               Conread position:171-446
               
               
               Cow position:chr13:16024833-16024557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 71

               
               
               Conread position:172-405
               
               
               Cow position:chr13:60690475-60690718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:172-433
               
               
               Cow position:chr13:5175813-5175541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:172-446
               
               
               Cow position:chr13:25531548-25531824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:172-446
               
               
               Cow position:chr13:51940973-51940702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:172-448
               
               
               Cow position:chr13:6974409-6974127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:172-448
               
               
               Cow position:chr13:8201241-8201518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:172-448
               
               
               Cow position:chr13:8524377-8524652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:172-448
               
               
               Cow position:chr13:15041228-15041506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:172-448
               
               
               Cow position:chr13:46182027-46181758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 19

               
               
               Conread position:173-413
               
               
               Cow position:chr13:24776534-24776284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):28, 159

               
               
               Conread position:173-448
               
               
               Cow position:chr13:55673962-55674242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):28, 151

               
               
               Conread position:176-445
               
               
               Cow position:chr13:15622047-15621778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:176-447
               
               
               Cow position:chr13:5091421-5091702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:176-448
               
               
               Cow position:chr13:7076496-7076223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:176-448
               
               
               Cow position:chr13:10924666-10924955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:177-392
               
               
               Cow position:chr13:36948931-36949151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 138

               
               
               Conread position:178-429
               
               
               Cow position:chr13:15869357-15869107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 69

               
               
               Conread position:178-446
               
               
               Cow position:chr13:41154808-41155066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:179-431
               
               
               Cow position:chr13:20530905-20531167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:179-448
               
               
               Cow position:chr13:43184635-43184909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):22, 85

               
               
               Conread position:180-448
               
               
               Cow position:chr13:2462995-2463269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:182-448
               
               
               Cow position:chr13:30026347-30026075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:183-448
               
               
               Cow position:chr13:47963968-47964224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:184-445
               
               
               Cow position:chr13:54093972-54093714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:186-448
               
               
               Cow position:chr13:8609318-8609581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:187-448
               
               
               Cow position:chr13:20649754-20650020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 74

               
               
               Conread position:189-448
               
               
               Cow position:chr13:42229554-42229275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 131

               
               
               Conread position:191-444
               
               
               Cow position:chr13:15192669-15192918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:192-445
               
               
               Cow position:chr13:18491817-18491565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):109, 39

               
               
               Conread position:192-448
               
               
               Cow position:chr13:4464231-4463974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):5, 133

               
               
               Conread position:193-448
               
               
               Cow position:chr13:15281715-15281974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:194-448
               
               
               Cow position:chr13:9643661-9643921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 74

               
               
               Conread position:195-440
               
               
               Cow position:chr13:13465570-13465803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr13:10845813-10845562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:195-448
               
               
               Cow position:chr13:21039378-21039637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:196-442
               
               
               Cow position:chr13:6975571-6975823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 126

               
               
               Conread position:196-448
               
               
               Cow position:chr13:20839786-20839532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):66, 143

               
               
               Conread position:196-448
               
               
               Cow position:chr13:45073716-45073955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):134, 63

               
               
               Conread position:202-446
               
               
               Cow position:chr13:15110537-15110282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:209-444
               
               
               Cow position:chr13:46112173-46111935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:211-447
               
               
               Cow position:chr13:9593711-9593472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:216-400
               
               
               Cow position:chr13:20509931-20509747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:216-448
               
               
               Cow position:chr13:24230412-24230180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:216-448
               
               
               Cow position:chr13:52749289-52749508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:217-448
               
               
               Cow position:chr13:57475218-57475452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:217-448
               
               
               Cow position:chr13:62247329-62247095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:218-448
               
               
               Cow position:chr13:8652240-8652476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:228-448
               
               
               Cow position:chr13:15991035-15991263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 212

               
               
               Conread position:228-448
               
               
               Cow position:chr13:55583386-55583160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:228-448
               
               
               Cow position:chr13:61990147-61990371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:233-443
               
               
               Cow position:chr13:19188486-19188272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:234-448
               
               
               Cow position:chr13:5758164-5758376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:235-446
               
               
               Cow position:chr13:52929880-52929679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:237-448
               
               
               Cow position:chr13:49022692-49022902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:246-448
               
               
               Cow position:chr13:29831265-29831465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:273-448
               
               
               Cow position:chr13:16711773-16711593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 165

               
               
               Conread position:275-446
               
               
               Cow position:chr13:8374631-8374805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:286-448
               
               
               Cow position:chr13:9800638-9800476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:287-443
               
               
               Cow position:chr13:11591875-11591720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:293-448
               
               
               Cow position:chr13:50713325-50713176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 101

               
               
               Conread position:295-425
               
               
               Cow position:chr13:55947894-55947761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:301-447
               
               
               Cow position:chr13:56678129-56677980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:1-448
               
               
               Cow position:chr14:12857083-12856621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:2-432
               
               
               Cow position:chr14:13810398-13809972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 143

               
               
               Conread position:3-448
               
               
               Cow position:chr14:41128355-41127920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:4-416
               
               
               Cow position:chr14:38406468-38406856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:4-448
               
               
               Cow position:chr14:5630622-5630185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 109

               
               
               Conread position:4-448
               
               
               Cow position:chr14:19593679-19594114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:8-448
               
               
               Cow position:chr14:36289332-36289778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 115

               
               
               Conread position:8-448
               
               
               Cow position:chr14:48740423-48740846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 140

               
               
               Conread position:19-448
               
               
               Cow position:chr14:41211292-41210878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 84

               
               
               Conread position:23-408
               
               
               Cow position:chr14:34777134-34777513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):194, 114

               
               
               Conread position:50-448
               
               
               Cow position:chr14:33247035-33247406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 9

               
               
               Conread position:57-448
               
               
               Cow position:chr14:8540813-8541189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 71

               
               
               Conread position:83-448
               
               
               Cow position:chr14:1868023-1868360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):226, 47

               
               
               Conread position:112-438
               
               
               Cow position:chr14:42596740-42596415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:113-447
               
               
               Cow position:chr14:48412518-48412858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 52

               
               
               Conread position:123-396
               
               
               Cow position:chr14:12613753-12614019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):178, 52

               
               
               Conread position:123-445
               
               
               Cow position:chr14:3564621-3564310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:127-448
               
               
               Cow position:chr14:33773705-33774028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:131-448
               
               
               Cow position:chr14:30662329-30662012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:133-448
               
               
               Cow position:chr14:7558088-7558418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:144-443
               
               
               Cow position:chr14:40269515-40269814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:144-448
               
               
               Cow position:chr14:20600707-20600410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:146-448
               
               
               Cow position:chr14:8754654-8754342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:153-443
               
               
               Cow position:chr14:15518057-15518348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:155-448
               
               
               Cow position:chr14:25385571-25385864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:155-448
               
               
               Cow position:chr14:33828469-33828185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:156-446
               
               
               Cow position:chr14:26097369-26097668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 204

               
               
               Conread position:160-432
               
               
               Cow position:chr14:25779408-25779135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 164

               
               
               Conread position:160-438
               
               
               Cow position:chr14:21964430-21964154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:161-409
               
               
               Cow position:chr14:12484000-12484241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:161-443
               
               
               Cow position:chr14:39774742-39775024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):40, 115

               
               
               Conread position:161-445
               
               
               Cow position:chr14:35381899-35381616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:161-448
               
               
               Cow position:chr14:34199531-34199820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:163-405
               
               
               Cow position:chr14:43046455-43046212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:163-440
               
               
               Cow position:chr14:20712371-20712661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 283

               
               
               Conread position:163-445
               
               
               Cow position:chr14:24992123-24991848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:163-448
               
               
               Cow position:chr14:445709-445429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:163-448
               
               
               Cow position:chr14:24683825-24684109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):138, 33

               
               
               Conread position:163-448
               
               
               Cow position:chr14:49021591-49021877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 67

               
               
               Conread position:164-442
               
               
               Cow position:chr14:46489944-46490230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 277

               
               
               Conread position:165-394
               
               
               Cow position:chr14:34395363-34395596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:165-432
               
               
               Cow position:chr14:45605398-45605126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:165-445
               
               
               Cow position:chr14:7270707-7270977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr14:19618457-19618728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:165-448
               
               
               Cow position:chr14:37151332-37151637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):36, 292

               
               
               Conread position:166-344
               
               
               Cow position:chr14:29010551-29010368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:166-443
               
               
               Cow position:chr14:28378672-28378387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:166-445
               
               
               Cow position:chr14:19222187-19221904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:166-446
               
               
               Cow position:chr14:14326796-14327082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 229

               
               
               Conread position:166-446
               
               
               Cow position:chr14:20932926-20932639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:166-446
               
               
               Cow position:chr14:44848077-44848347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):164, 87

               
               
               Conread position:166-447
               
               
               Cow position:chr14:27362352-27362064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:166-448
               
               
               Cow position:chr14:13006811-13006527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:166-448
               
               
               Cow position:chr14:14621878-14622155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):135, 73

               
               
               Conread position:166-448
               
               
               Cow position:chr14:45052746-45052466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:170-448
               
               
               Cow position:chr14:7482359-7482079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 87

               
               
               Conread position:170-448
               
               
               Cow position:chr14:18904304-18904587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 146

               
               
               Conread position:172-406
               
               
               Cow position:chr14:15913252-15913483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:172-433
               
               
               Cow position:chr14:6419016-6419265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:172-444
               
               
               Cow position:chr14:4991293-4991029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:172-446
               
               
               Cow position:chr14:21284931-21284647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 222

               
               
               Conread position:172-447
               
               
               Cow position:chr14:13582462-13582728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):180, 20

               
               
               Conread position:172-448
               
               
               Cow position:chr14:7960062-7959799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:172-448
               
               
               Cow position:chr14:22967053-22966778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 88

               
               
               Conread position:172-448
               
               
               Cow position:chr14:41756560-41756287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:176-364
               
               
               Cow position:chr14:40183342-40183146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 150

               
               
               Conread position:176-419
               
               
               Cow position:chr14:19624388-19624137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 150

               
               
               Conread position:176-448
               
               
               Cow position:chr14:19863143-19863410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 84

               
               
               Conread position:176-448
               
               
               Cow position:chr14:38143816-38144084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 92

               
               
               Conread position:178-431
               
               
               Cow position:chr14:22381259-22381514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:178-448
               
               
               Cow position:chr14:38168979-38168715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:179-448
               
               
               Cow position:chr14:9020321-9020049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:179-448
               
               
               Cow position:chr14:10858726-10858456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:180-422
               
               
               Cow position:chr14:10912679-10912918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:182-407
               
               
               Cow position:chr14:39926483-39926265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:183-418
               
               
               Cow position:chr14:4226904-4227153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:186-436
               
               
               Cow position:chr14:23464527-23464781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:188-405
               
               
               Cow position:chr14:21230320-21230114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):142, 72

               
               
               Conread position:188-444
               
               
               Cow position:chr14:47672597-47672857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:189-448
               
               
               Cow position:chr14:8964828-8964571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:192-446
               
               
               Cow position:chr14:48446878-48447138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 212

               
               
               Conread position:193-442
               
               
               Cow position:chr14:37435012-37435274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:194-439
               
               
               Cow position:chr14:39422307-39422563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:195-445
               
               
               Cow position:chr14:34355424-34355668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):107, 48

               
               
               Conread position:195-448
               
               
               Cow position:chr14:19129789-19129529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:195-448
               
               
               Cow position:chr14:24981732-24981478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):67, 59

               
               
               Conread position:196-448
               
               
               Cow position:chr14:48689807-48689551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 132

               
               
               Conread position:204-448
               
               
               Cow position:chr14:8786280-8786527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):49, 119

               
               
               Conread position:205-447
               
               
               Cow position:chr14:34697898-34697654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:216-448
               
               
               Cow position:chr14:40165678-40165447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:216-448
               
               
               Cow position:chr14:50363062-50362817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):33, 230

               
               
               Conread position:218-448
               
               
               Cow position:chr14:6175838-6175607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:221-444
               
               
               Cow position:chr14:16033259-16033032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:223-428
               
               
               Cow position:chr14:10721485-10721686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:223-448
               
               
               Cow position:chr14:1977829-1978047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:225-446
               
               
               Cow position:chr14:1802864-1803088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 144

               
               
               Conread position:228-448
               
               
               Cow position:chr14:44233938-44234155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:229-448
               
               
               Cow position:chr14:29030072-29029851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:229-448
               
               
               Cow position:chr14:33643547-33643757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 31

               
               
               Conread position:230-448
               
               
               Cow position:chr14:27919495-27919716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:233-413
               
               
               Cow position:chr14:22952758-22952936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:235-448
               
               
               Cow position:chr14:25002274-25002058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:238-448
               
               
               Cow position:chr14:5573179-5572966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:239-447
               
               
               Cow position:chr14:26490510-26490718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:243-448
               
               
               Cow position:chr14:23762104-23761892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:262-448
               
               
               Cow position:chr14:33830510-33830324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:267-448
               
               
               Cow position:chr14:19394566-19394384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:268-431
               
               
               Cow position:chr14:24991330-24991161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:273-416
               
               
               Cow position:chr14:50518774-50518918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:275-448
               
               
               Cow position:chr14:41966438-41966267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:276-448
               
               
               Cow position:chr14:4877034-4877208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:291-448
               
               
               Cow position:chr14:1859432-1859590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:295-431
               
               
               Cow position:chr14:46654367-46654505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):6, 25

               
               
               Conread position:297-443
               
               
               Cow position:chr14:3836290-3836148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:300-438
               
               
               Cow position:chr14:37467589-37467729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:300-448
               
               
               Cow position:chr14:12511729-12511878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:300-448
               
               
               Cow position:chr14:33341930-33341777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 138

               
               
               Conread position:314-445
               
               
               Cow position:chr14:23424417-23424285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:314-445
               
               
               Cow position:chr14:23443178-23443046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:1-440
               
               
               Cow position:chr15:34140496-34140062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:3-448
               
               
               Cow position:chr15:17100191-17100640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:4-446
               
               
               Cow position:chr15:2800480-2800051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 146

               
               
               Conread position:7-416
               
               
               Cow position:chr15:32287252-32287654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 116

               
               
               Conread position:7-446
               
               
               Cow position:chr15:21803151-21803589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 12

               
               
               Conread position:7-448
               
               
               Cow position:chr15:14855969-14856397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 182

               
               
               Conread position:7-448
               
               
               Cow position:chr15:16927570-16928024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 194

               
               
               Conread position:7-448
               
               
               Cow position:chr15:21894298-21893848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:7-448
               
               
               Cow position:chr15:36781828-36782255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 137

               
               
               Conread position:8-448
               
               
               Cow position:chr15:38883682-38883216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 331

               
               
               Conread position:19-445
               
               
               Cow position:chr15:1298235-1297812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 102

               
               
               Conread position:45-396
               
               
               Cow position:chr15:7827574-7827916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 80

               
               
               Conread position:99-448
               
               
               Cow position:chr15:15573408-15573760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 15

               
               
               Conread position:104-429
               
               
               Cow position:chr15:21523221-21522874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 235

               
               
               Conread position:104-448
               
               
               Cow position:chr15:41418402-41418763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:112-446
               
               
               Cow position:chr15:42143259-42142931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):71, 46

               
               
               Conread position:121-437
               
               
               Cow position:chr15:4535307-4534986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 165

               
               
               Conread position:122-448
               
               
               Cow position:chr15:41619787-41620121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:123-445
               
               
               Cow position:chr15:47822197-47821888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):56, 52

               
               
               Conread position:132-448
               
               
               Cow position:chr15:46563093-46563414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:133-448
               
               
               Cow position:chr15:9871018-9871347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 196

               
               
               Conread position:134-436
               
               
               Cow position:chr15:40343635-40343326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:136-445
               
               
               Cow position:chr15:40009268-40009581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:140-440
               
               
               Cow position:chr15:44641273-44640975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:148-448
               
               
               Cow position:chr15:26752651-26752927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:149-445
               
               
               Cow position:chr15:6970354-6970060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):113, 13

               
               
               Conread position:149-448
               
               
               Cow position:chr15:45323156-45322851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:152-448
               
               
               Cow position:chr15:40999694-41000001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:156-406
               
               
               Cow position:chr15:24044734-24044982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):46, 165

               
               
               Conread position:158-448
               
               
               Cow position:chr15:47105399-47105111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:160-429
               
               
               Cow position:chr15:11362822-11363088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:161-447
               
               
               Cow position:chr15:24616927-24616642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:162-447
               
               
               Cow position:chr15:1329743-1330032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:163-427
               
               
               Cow position:chr15:38162365-38162099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:163-439
               
               
               Cow position:chr15:49738690-49738962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:163-448
               
               
               Cow position:chr15:19403334-19403063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 86

               
               
               Conread position:165-396
               
               
               Cow position:chr15:38846451-38846225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:165-402
               
               
               Cow position:chr15:16616549-16616317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:165-447
               
               
               Cow position:chr15:20725262-20725545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:165-448
               
               
               Cow position:chr15:13554695-13554423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:165-448
               
               
               Cow position:chr15:19119262-19119541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:165-448
               
               
               Cow position:chr15:26911726-26912006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 38

               
               
               Conread position:166-380
               
               
               Cow position:chr15:7271959-7272180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:166-385
               
               
               Cow position:chr15:51831238-51831465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:166-428
               
               
               Cow position:chr15:24038056-24038313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:166-428
               
               
               Cow position:chr15:51632691-51632948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:166-431
               
               
               Cow position:chr15:7749792-7750051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:166-439
               
               
               Cow position:chr15:28126695-28126968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:166-445
               
               
               Cow position:chr15:27281216-27280944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:166-446
               
               
               Cow position:chr15:16307770-16307494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 150

               
               
               Conread position:166-448
               
               
               Cow position:chr15:2952776-2953064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:166-448
               
               
               Cow position:chr15:5234651-5234931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 104

               
               
               Conread position:166-448
               
               
               Cow position:chr15:20458946-20459238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:166-448
               
               
               Cow position:chr15:21388813-21389097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:167-448
               
               
               Cow position:chr15:20422411-20422712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:168-448
               
               
               Cow position:chr15:6462150-6462427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:170-423
               
               
               Cow position:chr15:24968137-24967882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:170-448
               
               
               Cow position:chr15:5536099-5535825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:170-448
               
               
               Cow position:chr15:17084560-17084279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:171-446
               
               
               Cow position:chr15:35642369-35642092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:172-405
               
               
               Cow position:chr15:47990414-47990653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:172-408
               
               
               Cow position:chr15:4485492-4485251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:172-428
               
               
               Cow position:chr15:5683482-5683229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:172-447
               
               
               Cow position:chr15:50341456-50341183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:173-422
               
               
               Cow position:chr15:12723425-12723184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:173-448
               
               
               Cow position:chr15:22137030-22136753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:173-448
               
               
               Cow position:chr15:27972868-27973147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):24, 96

               
               
               Conread position:176-442
               
               
               Cow position:chr15:53680424-53680684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:176-445
               
               
               Cow position:chr15:29792568-29792832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:176-445
               
               
               Cow position:chr15:52380634-52380361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):125, 92

               
               
               Conread position:176-448
               
               
               Cow position:chr15:608507-608216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:176-448
               
               
               Cow position:chr15:794669-794951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:176-448
               
               
               Cow position:chr15:43626806-43626539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:179-448
               
               
               Cow position:chr15:39621679-39621408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:180-447
               
               
               Cow position:chr15:29810449-29810190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 95

               
               
               Conread position:180-447
               
               
               Cow position:chr15:39599780-39599514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:181-448
               
               
               Cow position:chr15:44256816-44256547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:182-448
               
               
               Cow position:chr15:31857930-31857661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):17, 142

               
               
               Conread position:184-448
               
               
               Cow position:chr15:35945878-35945599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 155

               
               
               Conread position:185-447
               
               
               Cow position:chr15:36392004-36391746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:186-447
               
               
               Cow position:chr15:16936524-16936777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:187-448
               
               
               Cow position:chr15:21421274-21421006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 65

               
               
               Conread position:187-448
               
               
               Cow position:chr15:26573720-26573449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 143

               
               
               Conread position:188-448
               
               
               Cow position:chr15:5633004-5632756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):8, 73

               
               
               Conread position:189-446
               
               
               Cow position:chr15:10088644-10088391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):112, 68

               
               
               Conread position:189-448
               
               
               Cow position:chr15:13387414-13387146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:190-437
               
               
               Cow position:chr15:16604150-16603899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):91, 5

               
               
               Conread position:194-448
               
               
               Cow position:chr15:26903520-26903259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:195-448
               
               
               Cow position:chr15:50322919-50322664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 73

               
               
               Conread position:196-444
               
               
               Cow position:chr15:35112565-35112812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):105, 67

               
               
               Conread position:196-448
               
               
               Cow position:chr15:20352157-20351902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 128

               
               
               Conread position:200-448
               
               
               Cow position:chr15:11995706-11995957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 62

               
               
               Conread position:205-446
               
               
               Cow position:chr15:26918957-26919203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:205-448
               
               
               Cow position:chr15:10846036-10845789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:209-447
               
               
               Cow position:chr15:27900194-27900440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:210-408
               
               
               Cow position:chr15:36347078-36346869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:216-448
               
               
               Cow position:chr15:225500-225734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:219-448
               
               
               Cow position:chr15:11646189-11646422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:220-400
               
               
               Cow position:chr15:5071801-5071981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 48

               
               
               Conread position:224-448
               
               
               Cow position:chr15:21821625-21821854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:225-448
               
               
               Cow position:chr15:4350306-4350533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 125

               
               
               Conread position:228-448
               
               
               Cow position:chr15:16667208-16667433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:231-448
               
               
               Cow position:chr15:1804040-1804265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 198

               
               
               Conread position:231-448
               
               
               Cow position:chr15:2968621-2968406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:231-448
               
               
               Cow position:chr15:36773406-36773628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:251-448
               
               
               Cow position:chr15:16657760-16657561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:271-447
               
               
               Cow position:chr15:49274202-49274025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:275-445
               
               
               Cow position:chr15:12655667-12655843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:278-448
               
               
               Cow position:chr15:286720-286548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:279-448
               
               
               Cow position:chr15:12441584-12441755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 156

               
               
               Conread position:287-448
               
               
               Cow position:chr15:10512038-10512202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:287-448
               
               
               Cow position:chr15:10608073-10608236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:287-448
               
               
               Cow position:chr15:43599417-43599259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:288-448
               
               
               Cow position:chr15:12870632-12870794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:291-445
               
               
               Cow position:chr15:23927238-23927401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:291-448
               
               
               Cow position:chr15:9107265-9107104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:299-448
               
               
               Cow position:chr15:36724960-36725108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:306-446
               
               
               Cow position:chr15:39326299-39326444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:312-448
               
               
               Cow position:chr15:35204940-35205076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:314-448
               
               
               Cow position:chr15:34284205-34284340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:316-448
               
               
               Cow position:chr15:31928694-31928826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:329-448
               
               
               Cow position:chr15:35440885-35441012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:7-447
               
               
               Cow position:chr16:14758323-14758757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 72

               
               
               Conread position:7-448
               
               
               Cow position:chr16:11619339-11619769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 11

               
               
               Conread position:7-448
               
               
               Cow position:chr16:20025031-20025464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 115

               
               
               Conread position:7-448
               
               
               Cow position:chr16:22868596-22868158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 116

               
               
               Conread position:7-448
               
               
               Cow position:chr16:46552415-46552814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 112

               
               
               Conread position:8-447
               
               
               Cow position:chr16:237855-238287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 115

               
               
               Conread position:8-448
               
               
               Cow position:chr16:14241959-14242391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 115

               
               
               Conread position:11-439
               
               
               Cow position:chr16:53612895-53613323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 14

               
               
               Conread position:18-448
               
               
               Cow position:chr16:15960695-15960270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 36

               
               
               Conread position:35-428
               
               
               Cow position:chr16:25288069-25287690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 14

               
               
               Conread position:74-444
               
               
               Cow position:chr16:39164888-39165258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:93-431
               
               
               Cow position:chr16:30209424-30209754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:99-448
               
               
               Cow position:chr16:43308896-43308541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:105-448
               
               
               Cow position:chr16:17745518-17745856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 26

               
               
               Conread position:125-448
               
               
               Cow position:chr16:39417415-39417100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:130-448
               
               
               Cow position:chr16:42339901-42340216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:131-425
               
               
               Cow position:chr16:5740955-5741238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 70

               
               
               Conread position:131-448
               
               
               Cow position:chr16:8522684-8522365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:138-336
               
               
               Cow position:chr16:31122545-31122340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 189

               
               
               Conread position:139-398
               
               
               Cow position:chr16:30939443-30939704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:140-448
               
               
               Cow position:chr16:18354243-18353936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:141-448
               
               
               Cow position:chr16:43506086-43505785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:142-448
               
               
               Cow position:chr16:11775335-11775032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:144-448
               
               
               Cow position:chr16:50288873-50289172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:146-448
               
               
               Cow position:chr16:3633005-3633314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:148-448
               
               
               Cow position:chr16:16548331-16548633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:150-446
               
               
               Cow position:chr16:48385682-48385381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 144

               
               
               Conread position:153-448
               
               
               Cow position:chr16:7665356-7665657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:153-448
               
               
               Cow position:chr16:18205693-18205979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 108

               
               
               Conread position:153-448
               
               
               Cow position:chr16:24672636-24672337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:154-445
               
               
               Cow position:chr16:26500881-26501175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:155-442
               
               
               Cow position:chr16:52889686-52889396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 168

               
               
               Conread position:156-442
               
               
               Cow position:chr16:4103427-4103148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 9

               
               
               Conread position:158-444
               
               
               Cow position:chr16:44973223-44973510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:158-448
               
               
               Cow position:chr16:49169657-49169361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 104

               
               
               Conread position:159-448
               
               
               Cow position:chr16:13611719-13611434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:159-448
               
               
               Cow position:chr16:54287606-54287886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):142, 7

               
               
               Conread position:160-442
               
               
               Cow position:chr16:51400017-51399737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:160-448
               
               
               Cow position:chr16:4144795-4145085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 41

               
               
               Conread position:160-448
               
               
               Cow position:chr16:13791240-13791537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 157

               
               
               Conread position:160-448
               
               
               Cow position:chr16:23472479-23472769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 105

               
               
               Conread position:161-442
               
               
               Cow position:chr16:10040109-10039830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:162-406
               
               
               Cow position:chr16:8620983-8621210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:162-443
               
               
               Cow position:chr16:3614481-3614762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:162-448
               
               
               Cow position:chr16:17142669-17142954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:163-397
               
               
               Cow position:chr16:33751930-33752165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:163-445
               
               
               Cow position:chr16:53627691-53627411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:163-448
               
               
               Cow position:chr16:4981639-4981357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:163-448
               
               
               Cow position:chr16:38663979-38663690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 160

               
               
               Conread position:164-431
               
               
               Cow position:chr16:15808707-15808980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:164-447
               
               
               Cow position:chr16:50189857-50189572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:165-441
               
               
               Cow position:chr16:47510234-47509964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:165-446
               
               
               Cow position:chr16:48096029-48095747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):97, 85

               
               
               Conread position:165-448
               
               
               Cow position:chr16:4372762-4372473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:165-448
               
               
               Cow position:chr16:9932890-9933181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:165-448
               
               
               Cow position:chr16:16096473-16096760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:165-448
               
               
               Cow position:chr16:51113142-51112858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:166-401
               
               
               Cow position:chr16:5726664-5726896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:166-419
               
               
               Cow position:chr16:49217830-49217569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:166-431
               
               
               Cow position:chr16:16368994-16368735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:166-441
               
               
               Cow position:chr16:13446994-13447278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:166-443
               
               
               Cow position:chr16:23363762-23363490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:166-446
               
               
               Cow position:chr16:3633850-3634134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:166-447
               
               
               Cow position:chr16:42217955-42217671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:166-447
               
               
               Cow position:chr16:42242383-42242098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:166-448
               
               
               Cow position:chr16:819986-820270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:166-448
               
               
               Cow position:chr16:4399456-4399755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):33, 283

               
               
               Conread position:166-448
               
               
               Cow position:chr16:6692880-6692581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 284

               
               
               Conread position:166-448
               
               
               Cow position:chr16:7542026-7542308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:166-448
               
               
               Cow position:chr16:7702266-7702547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:166-448
               
               
               Cow position:chr16:16402592-16402303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:166-448
               
               
               Cow position:chr16:39646295-39646565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):135, 54

               
               
               Conread position:166-448
               
               
               Cow position:chr16:52855281-52855012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:167-448
               
               
               Cow position:chr16:18141593-18141306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):131, 93

               
               
               Conread position:168-448
               
               
               Cow position:chr16:13307126-13306852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:170-446
               
               
               Cow position:chr16:30143473-30143188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 272

               
               
               Conread position:171-448
               
               
               Cow position:chr16:54665071-54664780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):30, 142

               
               
               Conread position:172-396
               
               
               Cow position:chr16:15408131-15407919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:172-447
               
               
               Cow position:chr16:47820312-47820587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 150

               
               
               Conread position:172-448
               
               
               Cow position:chr16:3246451-3246185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 65

               
               
               Conread position:172-448
               
               
               Cow position:chr16:35187996-35188273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:172-448
               
               
               Cow position:chr16:49125779-49125509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):129, 54

               
               
               Conread position:172-448
               
               
               Cow position:chr16:50688267-50688541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:173-448
               
               
               Cow position:chr16:25965248-25965523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:175-448
               
               
               Cow position:chr16:48492930-48493200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):127, 26

               
               
               Conread position:176-436
               
               
               Cow position:chr16:9790886-9790623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:176-443
               
               
               Cow position:chr16:16236383-16236116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:176-448
               
               
               Cow position:chr16:8933674-8933405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 73

               
               
               Conread position:177-431
               
               
               Cow position:chr16:43804243-43804497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:177-448
               
               
               Cow position:chr16:26373205-26372929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:177-448
               
               
               Cow position:chr16:43661198-43661470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 75

               
               
               Conread position:179-444
               
               
               Cow position:chr16:13195585-13195323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 90

               
               
               Conread position:179-448
               
               
               Cow position:chr16:37452868-37452594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:180-407
               
               
               Cow position:chr16:42633999-42633772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:180-448
               
               
               Cow position:chr16:9728953-9729215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:180-448
               
               
               Cow position:chr16:11008093-11008365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:181-448
               
               
               Cow position:chr16:13969629-13969350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:181-448
               
               
               Cow position:chr16:26610384-26610659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:183-396
               
               
               Cow position:chr16:37065480-37065265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:184-441
               
               
               Cow position:chr16:47620133-47620392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:188-431
               
               
               Cow position:chr16:23810679-23810915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:188-443
               
               
               Cow position:chr16:11815849-11815589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:189-448
               
               
               Cow position:chr16:30096372-30096111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:190-448
               
               
               Cow position:chr16:8193204-8193473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:191-448
               
               
               Cow position:chr16:7152414-7152151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:193-448
               
               
               Cow position:chr16:13233182-13232929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:194-439
               
               
               Cow position:chr16:4192656-4192412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:194-448
               
               
               Cow position:chr16:30037230-30036967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:195-431
               
               
               Cow position:chr16:14028850-14028625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:195-448
               
               
               Cow position:chr16:49230003-49229748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr16:51246728-51246967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):106, 50

               
               
               Conread position:197-445
               
               
               Cow position:chr16:21904930-21905179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:198-448
               
               
               Cow position:chr16:13973514-13973266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:199-447
               
               
               Cow position:chr16:32302218-32301988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:202-416
               
               
               Cow position:chr16:51531201-51530978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):58, 54

               
               
               Conread position:202-448
               
               
               Cow position:chr16:18758072-18757819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):60, 102

               
               
               Conread position:203-446
               
               
               Cow position:chr16:49336000-49336246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:204-448
               
               
               Cow position:chr16:43105739-43105495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:205-447
               
               
               Cow position:chr16:12361197-12360956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:211-445
               
               
               Cow position:chr16:8323205-8322965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 228

               
               
               Conread position:216-444
               
               
               Cow position:chr16:28692924-28692707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:216-448
               
               
               Cow position:chr16:43801123-43800897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 41

               
               
               Conread position:220-438
               
               
               Cow position:chr16:10462727-10462513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:220-448
               
               
               Cow position:chr16:8066091-8065868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:221-448
               
               
               Cow position:chr16:39237735-39237966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:223-391
               
               
               Cow position:chr16:9615442-9615274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:228-448
               
               
               Cow position:chr16:17982346-17982117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:228-448
               
               
               Cow position:chr16:42443950-42444176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:228-448
               
               
               Cow position:chr16:42752658-42752870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:231-448
               
               
               Cow position:chr16:14685588-14685373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:252-448
               
               
               Cow position:chr16:8076686-8076482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:262-448
               
               
               Cow position:chr16:14974703-14974520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:266-448
               
               
               Cow position:chr16:12273905-12274090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:269-432
               
               
               Cow position:chr16:35296909-35297074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:269-448
               
               
               Cow position:chr16:22380518-22380335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):5, 168

               
               
               Conread position:271-440
               
               
               Cow position:chr16:9136016-9136193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:271-448
               
               
               Cow position:chr16:33596094-33595917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:272-446
               
               
               Cow position:chr16:16280601-16280430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:273-448
               
               
               Cow position:chr16:47854785-47854960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:275-431
               
               
               Cow position:chr16:28198134-28198289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:275-431
               
               
               Cow position:chr16:50521322-50521481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:275-448
               
               
               Cow position:chr16:7549812-7549988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:275-448
               
               
               Cow position:chr16:29712264-29712439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:275-448
               
               
               Cow position:chr16:42734169-42733991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:279-448
               
               
               Cow position:chr16:31348919-31348744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:288-446
               
               
               Cow position:chr16:10772990-10773148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:288-446
               
               
               Cow position:chr16:56565453-56565613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:293-445
               
               
               Cow position:chr16:14699781-14699938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):8, 147

               
               
               Conread position:293-448
               
               
               Cow position:chr16:50453624-50453779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:294-448
               
               
               Cow position:chr16:19047575-19047414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):7, 124

               
               
               Conread position:296-443
               
               
               Cow position:chr16:30136029-30135878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 25

               
               
               Conread position:300-442
               
               
               Cow position:chr16:26068802-26068946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:300-448
               
               
               Cow position:chr16:36121110-36120963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:301-448
               
               
               Cow position:chr16:23955955-23955812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:301-448
               
               
               Cow position:chr16:33267587-33267733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:312-448
               
               
               Cow position:chr16:56796785-56796646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 127

               
               
               Conread position:316-448
               
               
               Cow position:chr16:30615095-30614960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:326-448
               
               
               Cow position:chr16:7619282-7619157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:1-442
               
               
               Cow position:chr17:5246527-5246948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 122

               
               
               Conread position:7-448
               
               
               Cow position:chr17:36790758-36791196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 86

               
               
               Conread position:8-415
               
               
               Cow position:chr17:5745610-5745226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 116

               
               
               Conread position:8-445
               
               
               Cow position:chr17:40741259-40741705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 259

               
               
               Conread position:53-446
               
               
               Cow position:chr17:11832465-11832057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 78

               
               
               Conread position:65-395
               
               
               Cow position:chr17:3843150-3843487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:67-408
               
               
               Cow position:chr17:3182920-3182568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):96, 205

               
               
               Conread position:67-438
               
               
               Cow position:chr17:21313106-21312759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 61

               
               
               Conread position:70-448
               
               
               Cow position:chr17:41290340-41289962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 182

               
               
               Conread position:91-448
               
               
               Cow position:chr17:17409995-17410353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 144

               
               
               Conread position:101-448
               
               
               Cow position:chr17:6623962-6624316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:103-446
               
               
               Cow position:chr17:7697777-7698109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:105-448
               
               
               Cow position:chr17:20839842-20839506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:112-448
               
               
               Cow position:chr17:13922199-13922541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:128-447
               
               
               Cow position:chr17:33926381-33926064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):30, 35

               
               
               Conread position:132-447
               
               
               Cow position:chr17:7132714-7132381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 193

               
               
               Conread position:133-448
               
               
               Cow position:chr17:9746264-9746576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 68

               
               
               Conread position:134-448
               
               
               Cow position:chr17:5423325-5423009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:144-448
               
               
               Cow position:chr17:11102036-11101743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:144-448
               
               
               Cow position:chr17:24761469-24761168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 57

               
               
               Conread position:149-437
               
               
               Cow position:chr17:25189040-25189340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:149-448
               
               
               Cow position:chr17:9079431-9079144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:150-448
               
               
               Cow position:chr17:28539800-28540090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:154-448
               
               
               Cow position:chr17:33271915-33271619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:156-448
               
               
               Cow position:chr17:15132932-15133205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):145, 45

               
               
               Conread position:156-448
               
               
               Cow position:chr17:34316942-34316654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 170

               
               
               Conread position:157-448
               
               
               Cow position:chr17:3471188-3471479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:157-448
               
               
               Cow position:chr17:24549943-24550237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:160-442
               
               
               Cow position:chr17:11056605-11056315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 165

               
               
               Conread position:161-447
               
               
               Cow position:chr17:12059315-12059033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 26

               
               
               Conread position:162-448
               
               
               Cow position:chr17:979362-979100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):139, 39

               
               
               Conread position:163-448
               
               
               Cow position:chr17:9117416-9117708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:163-448
               
               
               Cow position:chr17:20993267-20992978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:164-448
               
               
               Cow position:chr17:24077178-24077463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:165-376
               
               
               Cow position:chr17:16869502-16869292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:165-395
               
               
               Cow position:chr17:20126396-20126620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:165-406
               
               
               Cow position:chr17:12289640-12289398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:165-420
               
               
               Cow position:chr17:4612302-4612045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:165-446
               
               
               Cow position:chr17:2034320-2034587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:165-448
               
               
               Cow position:chr17:31481267-31480985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:165-448
               
               
               Cow position:chr17:40771605-40771896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 243

               
               
               Conread position:166-346
               
               
               Cow position:chr17:16117653-16117466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:166-406
               
               
               Cow position:chr17:11386292-11386536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):150, 35

               
               
               Conread position:166-431
               
               
               Cow position:chr17:3387070-3387317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:166-445
               
               
               Cow position:chr17:1295795-1295514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:166-446
               
               
               Cow position:chr17:9565085-9565365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 123

               
               
               Conread position:166-447
               
               
               Cow position:chr17:25815384-25815662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:166-447
               
               
               Cow position:chr17:27047939-27048215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:166-448
               
               
               Cow position:chr17:8079093-8079372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:166-448
               
               
               Cow position:chr17:18860943-18860661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:166-448
               
               
               Cow position:chr17:22032907-22032638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:166-448
               
               
               Cow position:chr17:24883788-24883511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:166-448
               
               
               Cow position:chr17:30539473-30539199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):30, 106

               
               
               Conread position:166-448
               
               
               Cow position:chr17:38832818-38833103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 129

               
               
               Conread position:167-396
               
               
               Cow position:chr17:11381942-11381711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:167-448
               
               
               Cow position:chr17:30665051-30665332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 18

               
               
               Conread position:168-424
               
               
               Cow position:chr17:32651394-32651656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:168-440
               
               
               Cow position:chr17:5896132-5895857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 109

               
               
               Conread position:168-448
               
               
               Cow position:chr17:3781823-3782107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:170-399
               
               
               Cow position:chr17:21680548-21680776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:170-447
               
               
               Cow position:chr17:38200986-38200705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 156

               
               
               Conread position:171-448
               
               
               Cow position:chr17:2662190-2662484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 279

               
               
               Conread position:172-430
               
               
               Cow position:chr17:26230722-26230997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:172-445
               
               
               Cow position:chr17:21739102-21738817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 276

               
               
               Conread position:172-446
               
               
               Cow position:chr17:5733666-5733410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 89

               
               
               Conread position:172-447
               
               
               Cow position:chr17:17121460-17121730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:172-448
               
               
               Cow position:chr17:20848313-20848583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 90

               
               
               Conread position:173-396
               
               
               Cow position:chr17:4473020-4472809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):157, 43

               
               
               Conread position:173-407
               
               
               Cow position:chr17:24553787-24554026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):31, 151

               
               
               Conread position:173-445
               
               
               Cow position:chr17:20780295-20780566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:173-448
               
               
               Cow position:chr17:11156710-11156433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 158

               
               
               Conread position:174-446
               
               
               Cow position:chr17:11296419-11296707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 151

               
               
               Conread position:174-448
               
               
               Cow position:chr17:21628267-21628538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:176-437
               
               
               Cow position:chr17:25097249-25097511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):86, 75

               
               
               Conread position:176-448
               
               
               Cow position:chr17:9853772-9854044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 155

               
               
               Conread position:176-448
               
               
               Cow position:chr17:24752508-24752259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:177-448
               
               
               Cow position:chr17:1020780-1020501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 96

               
               
               Conread position:177-448
               
               
               Cow position:chr17:13143903-13143628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:178-448
               
               
               Cow position:chr17:6566260-6566540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:180-436
               
               
               Cow position:chr17:966949-966698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:180-445
               
               
               Cow position:chr17:27765071-27765330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:180-446
               
               
               Cow position:chr17:20932126-20932389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:181-448
               
               
               Cow position:chr17:2810412-2810688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 80

               
               
               Conread position:183-373
               
               
               Cow position:chr17:33052656-33052845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:183-433
               
               
               Cow position:chr17:15067830-15067579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:184-437
               
               
               Cow position:chr17:27429372-27429628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:184-448
               
               
               Cow position:chr17:1035810-1035537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:186-448
               
               
               Cow position:chr17:44232924-44232652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:189-431
               
               
               Cow position:chr17:26224317-26224555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):73, 136

               
               
               Conread position:191-445
               
               
               Cow position:chr17:30734477-30734237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):110, 69

               
               
               Conread position:193-445
               
               
               Cow position:chr17:21697536-21697788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):69, 131

               
               
               Conread position:193-448
               
               
               Cow position:chr17:9911566-9911820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):7, 94

               
               
               Conread position:195-431
               
               
               Cow position:chr17:35311227-35311471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):67, 141

               
               
               Conread position:195-445
               
               
               Cow position:chr17:25999922-26000178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:195-445
               
               
               Cow position:chr17:32950078-32950332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr17:18929269-18929043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 9

               
               
               Conread position:197-393
               
               
               Cow position:chr17:4436423-4436227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):153, 71

               
               
               Conread position:216-445
               
               
               Cow position:chr17:10459109-10458879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:217-448
               
               
               Cow position:chr17:27058727-27058497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):8, 72

               
               
               Conread position:228-438
               
               
               Cow position:chr17:21415000-21414784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:228-446
               
               
               Cow position:chr17:1353235-1353455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:228-448
               
               
               Cow position:chr17:21298063-21298292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 40

               
               
               Conread position:230-394
               
               
               Cow position:chr17:38613087-38613253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:235-448
               
               
               Cow position:chr17:4786650-4786437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:237-444
               
               
               Cow position:chr17:267736-267529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:238-445
               
               
               Cow position:chr17:5382137-5381937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:242-448
               
               
               Cow position:chr17:6328961-6329175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 182

               
               
               Conread position:247-448
               
               
               Cow position:chr17:7803319-7803115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:252-446
               
               
               Cow position:chr17:31856525-31856731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:258-431
               
               
               Cow position:chr17:5830268-5830102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:266-445
               
               
               Cow position:chr17:25122532-25122351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:270-448
               
               
               Cow position:chr17:20884405-20884583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:273-445
               
               
               Cow position:chr17:11921399-11921217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:279-448
               
               
               Cow position:chr17:11215340-11215168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:288-446
               
               
               Cow position:chr17:7654557-7654394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:292-445
               
               
               Cow position:chr17:20305950-20306107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:300-448
               
               
               Cow position:chr17:27203133-27202986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:301-448
               
               
               Cow position:chr17:2275386-2275530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:307-447
               
               
               Cow position:chr17:1469293-1469438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 131

               
               
               Conread position:314-447
               
               
               Cow position:chr17:17193417-17193551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:317-448
               
               
               Cow position:chr17:21806523-21806392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:341-448
               
               
               Cow position:chr17:25126305-25126410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-448
               
               
               Cow position:chr18:11680267-11680710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 157

               
               
               Conread position:8-448
               
               
               Cow position:chr18:39875714-39875273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 119

               
               
               Conread position:9-448
               
               
               Cow position:chr18:12241849-12242263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:304
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:11-396
               
               
               Cow position:chr18:10101044-10101425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:12-448
               
               
               Cow position:chr18:26355478-26355042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):111, 73

               
               
               Conread position:19-446
               
               
               Cow position:chr18:33157370-33157803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 284

               
               
               Conread position:36-444
               
               
               Cow position:chr18:29796828-29796446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 88

               
               
               Conread position:53-445
               
               
               Cow position:chr18:45572704-45573091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 84

               
               
               Conread position:54-448
               
               
               Cow position:chr18:19273493-19273110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):208, 74

               
               
               Conread position:79-446
               
               
               Cow position:chr18:36097816-36098196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:123-431
               
               
               Cow position:chr18:48290777-48290469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:126-448
               
               
               Cow position:chr18:38344468-38344794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):5, 49

               
               
               Conread position:128-411
               
               
               Cow position:chr18:36445100-36445389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:130-448
               
               
               Cow position:chr18:24022048-24022374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:130-448
               
               
               Cow position:chr18:35012641-35012331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:132-448
               
               
               Cow position:chr18:14815662-14815356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:135-430
               
               
               Cow position:chr18:52382365-52382673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):20, 124

               
               
               Conread position:136-322
               
               
               Cow position:chr18:54084870-54084683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 134

               
               
               Conread position:137-445
               
               
               Cow position:chr18:19830975-19831293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):62, 6

               
               
               Conread position:144-440
               
               
               Cow position:chr18:47314613-47314302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:148-448
               
               
               Cow position:chr18:19850061-19849767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:149-443
               
               
               Cow position:chr18:21103077-21102791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:149-448
               
               
               Cow position:chr18:42747280-42747578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 91

               
               
               Conread position:150-446
               
               
               Cow position:chr18:26998550-26998867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):11, 289

               
               
               Conread position:154-318
               
               
               Cow position:chr18:29065681-29065518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):127, 70

               
               
               Conread position:154-431
               
               
               Cow position:chr18:13359754-13360030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:154-448
               
               
               Cow position:chr18:16418008-16417718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 154

               
               
               Conread position:157-447
               
               
               Cow position:chr18:22214181-22214473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:157-448
               
               
               Cow position:chr18:44262319-44262617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:158-396
               
               
               Cow position:chr18:23808178-23807938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:160-442
               
               
               Cow position:chr18:52658116-52658392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:161-445
               
               
               Cow position:chr18:32121360-32121084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:161-448
               
               
               Cow position:chr18:11867051-11867323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):169, 12

               
               
               Conread position:161-448
               
               
               Cow position:chr18:39662483-39662765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:161-448
               
               
               Cow position:chr18:45104746-45104455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:162-388
               
               
               Cow position:chr18:9818536-9818765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):139, 106

               
               
               Conread position:162-431
               
               
               Cow position:chr18:43563927-43564196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:162-440
               
               
               Cow position:chr18:11322288-11322574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 200

               
               
               Conread position:163-431
               
               
               Cow position:chr18:42966538-42966836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:163-444
               
               
               Cow position:chr18:51691768-51691480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 163

               
               
               Conread position:163-446
               
               
               Cow position:chr18:56150956-56150659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 163

               
               
               Conread position:163-448
               
               
               Cow position:chr18:9007849-9008117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:163-448
               
               
               Cow position:chr18:21195639-21195351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):37, 116

               
               
               Conread position:163-448
               
               
               Cow position:chr18:43284052-43283770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):99, 28

               
               
               Conread position:163-448
               
               
               Cow position:chr18:56159165-56159448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:164-365
               
               
               Cow position:chr18:37415060-37415266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 161

               
               
               Conread position:164-448
               
               
               Cow position:chr18:11377066-11377351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 85

               
               
               Conread position:164-448
               
               
               Cow position:chr18:22121181-22120899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 157

               
               
               Conread position:165-417
               
               
               Cow position:chr18:48036484-48036735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):97, 11

               
               
               Conread position:165-431
               
               
               Cow position:chr18:26586963-26586687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:165-445
               
               
               Cow position:chr18:24956998-24957284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 139

               
               
               Conread position:165-447
               
               
               Cow position:chr18:2774885-2774616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:165-447
               
               
               Cow position:chr18:23062501-23062215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:165-448
               
               
               Cow position:chr18:5766131-5766399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:165-448
               
               
               Cow position:chr18:15025381-15025659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:165-448
               
               
               Cow position:chr18:40758918-40759193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 95

               
               
               Conread position:166-420
               
               
               Cow position:chr18:19159261-19159012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 85

               
               
               Conread position:166-431
               
               
               Cow position:chr18:35076090-35076363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:166-442
               
               
               Cow position:chr18:26286616-26286884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:166-445
               
               
               Cow position:chr18:52635378-52635087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):135, 50

               
               
               Conread position:166-448
               
               
               Cow position:chr18:4182487-4182201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 70

               
               
               Conread position:166-448
               
               
               Cow position:chr18:4649032-4648761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:166-448
               
               
               Cow position:chr18:14048416-14048695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:166-448
               
               
               Cow position:chr18:33606339-33606617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 26

               
               
               Conread position:166-448
               
               
               Cow position:chr18:51756801-51757080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 87

               
               
               Conread position:168-438
               
               
               Cow position:chr18:47517503-47517240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 95

               
               
               Conread position:168-448
               
               
               Cow position:chr18:10861713-10861443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:168-448
               
               
               Cow position:chr18:48453399-48453674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:169-448
               
               
               Cow position:chr18:50381963-50382238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:170-448
               
               
               Cow position:chr18:6610151-6609872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:170-448
               
               
               Cow position:chr18:7486959-7487236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 163

               
               
               Conread position:170-448
               
               
               Cow position:chr18:50082539-50082271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:171-447
               
               
               Cow position:chr18:268103-267830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:171-448
               
               
               Cow position:chr18:5995180-5995456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:172-396
               
               
               Cow position:chr18:49543187-49543409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:172-430
               
               
               Cow position:chr18:31725175-31724907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):94, 29

               
               
               Conread position:172-448
               
               
               Cow position:chr18:56165692-56165968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 146

               
               
               Conread position:173-437
               
               
               Cow position:chr18:16847408-16847670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 63

               
               
               Conread position:173-438
               
               
               Cow position:chr18:31586654-31586394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:173-445
               
               
               Cow position:chr18:20174420-20174146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:173-448
               
               
               Cow position:chr18:3158891-3158611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):129, 62

               
               
               Conread position:175-445
               
               
               Cow position:chr18:35537517-35537247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:176-328
               
               
               Cow position:chr18:29264738-29264589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 24

               
               
               Conread position:176-448
               
               
               Cow position:chr18:25282842-25282567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 112

               
               
               Conread position:177-448
               
               
               Cow position:chr18:1585390-1585127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:178-445
               
               
               Cow position:chr18:3098597-3098338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):141, 9

               
               
               Conread position:178-447
               
               
               Cow position:chr18:32873298-32873577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 173

               
               
               Conread position:180-448
               
               
               Cow position:chr18:2592456-2592178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:181-420
               
               
               Cow position:chr18:2569518-2569750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:182-447
               
               
               Cow position:chr18:46437034-46436779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:184-442
               
               
               Cow position:chr18:29649972-29649704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):20, 72

               
               
               Conread position:185-445
               
               
               Cow position:chr18:4381016-4381277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:190-448
               
               
               Cow position:chr18:12058744-12058988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:194-393
               
               
               Cow position:chr18:21768359-21768563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):102, 74

               
               
               Conread position:194-431
               
               
               Cow position:chr18:37382366-37382118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):68, 130

               
               
               Conread position:194-441
               
               
               Cow position:chr18:1582543-1582291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:195-431
               
               
               Cow position:chr18:33793441-33793674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr18:3044165-3044435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:196-448
               
               
               Cow position:chr18:2480376-2480642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:213-448
               
               
               Cow position:chr18:20482123-20481896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:216-446
               
               
               Cow position:chr18:21205120-21205348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 44

               
               
               Conread position:216-446
               
               
               Cow position:chr18:32883055-32883291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:218-448
               
               
               Cow position:chr18:12809615-12809841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:219-396
               
               
               Cow position:chr18:24636271-24636435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:222-442
               
               
               Cow position:chr18:14872108-14871890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:225-448
               
               
               Cow position:chr18:48829024-48828788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:228-440
               
               
               Cow position:chr18:25984807-25984592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:230-429
               
               
               Cow position:chr18:28823201-28823001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:230-447
               
               
               Cow position:chr18:219100-219325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:235-448
               
               
               Cow position:chr18:51392873-51392655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:239-448
               
               
               Cow position:chr18:2864222-2864004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:240-431
               
               
               Cow position:chr18:53962461-53962662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:241-406
               
               
               Cow position:chr18:18815894-18815728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:241-448
               
               
               Cow position:chr18:39434602-39434812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:243-448
               
               
               Cow position:chr18:47812249-47812457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):6, 42

               
               
               Conread position:246-446
               
               
               Cow position:chr18:7415246-7415047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:252-446
               
               
               Cow position:chr18:3211658-3211862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:253-448
               
               
               Cow position:chr18:36184114-36183919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 150

               
               
               Conread position:263-431
               
               
               Cow position:chr18:47124506-47124673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:267-446
               
               
               Cow position:chr18:7108929-7109114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 172

               
               
               Conread position:271-448
               
               
               Cow position:chr18:19896646-19896465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:271-448
               
               
               Cow position:chr18:27109487-27109306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:275-446
               
               
               Cow position:chr18:27637022-27637196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 161

               
               
               Conread position:282-448
               
               
               Cow position:chr18:51676277-51676103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:284-447
               
               
               Cow position:chr18:43555704-43555539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:287-446
               
               
               Cow position:chr18:18369539-18369375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:288-448
               
               
               Cow position:chr18:30586395-30586235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:290-445
               
               
               Cow position:chr18:2042668-2042517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 62

               
               
               Conread position:291-448
               
               
               Cow position:chr18:35886706-35886871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 150

               
               
               Conread position:299-448
               
               
               Cow position:chr18:4556332-4556180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:299-448
               
               
               Cow position:chr18:51643533-51643379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:313-448
               
               
               Cow position:chr18:44026973-44027107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:341-448
               
               
               Cow position:chr18:23162772-23162879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:1-448
               
               
               Cow position:chr19:36379796-36380261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:3-444
               
               
               Cow position:chr19:20935308-20935758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 186

               
               
               Conread position:7-446
               
               
               Cow position:chr19:15887772-15887314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 139

               
               
               Conread position:8-396
               
               
               Cow position:chr19:37562406-37562050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 41

               
               
               Conread position:11-448
               
               
               Cow position:chr19:19919883-19919453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 88

               
               
               Conread position:13-446
               
               
               Cow position:chr19:43417985-43418411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 221

               
               
               Conread position:26-438
               
               
               Cow position:chr19:14347591-14348015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 265

               
               
               Conread position:56-448
               
               
               Cow position:chr19:13316808-13316410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 180

               
               
               Conread position:104-444
               
               
               Cow position:chr19:25851826-25851484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:119-445
               
               
               Cow position:chr19:38596289-38596623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:125-447
               
               
               Cow position:chr19:21335931-21335598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:130-448
               
               
               Cow position:chr19:31846854-31846542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:131-448
               
               
               Cow position:chr19:34166028-34166379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 155

               
               
               Conread position:131-448
               
               
               Cow position:chr19:40449721-40450027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):170, 70

               
               
               Conread position:132-413
               
               
               Cow position:chr19:4537721-4537447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):198, 13

               
               
               Conread position:132-439
               
               
               Cow position:chr19:1898542-1898238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:136-448
               
               
               Cow position:chr19:35622060-35622366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:141-407
               
               
               Cow position:chr19:29627678-29627412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:144-448
               
               
               Cow position:chr19:8331997-8332308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:149-448
               
               
               Cow position:chr19:12601517-12601818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:149-448
               
               
               Cow position:chr19:47109750-47110049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):152, 52

               
               
               Conread position:153-447
               
               
               Cow position:chr19:31825302-31825003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:154-448
               
               
               Cow position:chr19:2734164-2734458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 6

               
               
               Conread position:155-446
               
               
               Cow position:chr19:17274009-17273726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:157-443
               
               
               Cow position:chr19:1152941-1153219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:157-448
               
               
               Cow position:chr19:34425302-34425590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:159-448
               
               
               Cow position:chr19:10080786-10081083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:160-448
               
               
               Cow position:chr19:35380832-35380544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):6, 62

               
               
               Conread position:161-395
               
               
               Cow position:chr19:48409237-48409466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):140, 29

               
               
               Conread position:161-447
               
               
               Cow position:chr19:51185146-51185431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:161-448
               
               
               Cow position:chr19:14928951-14928648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:162-442
               
               
               Cow position:chr19:6417320-6417599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 82

               
               
               Conread position:162-446
               
               
               Cow position:chr19:37647117-37646829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:162-448
               
               
               Cow position:chr19:23222358-23222641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:162-448
               
               
               Cow position:chr19:43058250-43058542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:163-437
               
               
               Cow position:chr19:35808392-35808139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:163-445
               
               
               Cow position:chr19:33932420-33932143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:163-447
               
               
               Cow position:chr19:16694326-16694024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):89, 126

               
               
               Conread position:163-448
               
               
               Cow position:chr19:32457363-32457650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 159

               
               
               Conread position:163-448
               
               
               Cow position:chr19:48474864-48475140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:164-448
               
               
               Cow position:chr19:47118776-47118488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 159

               
               
               Conread position:165-446
               
               
               Cow position:chr19:40051662-40051387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:165-447
               
               
               Cow position:chr19:53543156-53542884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):136, 95

               
               
               Conread position:165-448
               
               
               Cow position:chr19:46822162-46822464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 175

               
               
               Conread position:166-360
               
               
               Cow position:chr19:19499828-19499633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:166-373
               
               
               Cow position:chr19:33293888-33293673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 159

               
               
               Conread position:166-440
               
               
               Cow position:chr19:8496577-8496296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:166-445
               
               
               Cow position:chr19:1901277-1900995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:166-447
               
               
               Cow position:chr19:38340250-38339973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:166-447
               
               
               Cow position:chr19:53657625-53657899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:166-448
               
               
               Cow position:chr19:2577300-2577574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:166-448
               
               
               Cow position:chr19:6515985-6516277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 133

               
               
               Conread position:166-448
               
               
               Cow position:chr19:10171724-10172013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:166-448
               
               
               Cow position:chr19:25653033-25652748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 21

               
               
               Conread position:166-448
               
               
               Cow position:chr19:46918565-46918858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 278

               
               
               Conread position:167-445
               
               
               Cow position:chr19:44397225-44397511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:167-448
               
               
               Cow position:chr19:730005-729734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:167-448
               
               
               Cow position:chr19:3246309-3246041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:168-448
               
               
               Cow position:chr19:1664468-1664182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):34, 156

               
               
               Conread position:168-448
               
               
               Cow position:chr19:42694714-42695004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 156

               
               
               Conread position:168-448
               
               
               Cow position:chr19:56063704-56063421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):6, 80

               
               
               Conread position:171-448
               
               
               Cow position:chr19:53372166-53371890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:172-431
               
               
               Cow position:chr19:10786629-10786376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:172-448
               
               
               Cow position:chr19:30886124-30886404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:175-445
               
               
               Cow position:chr19:15863305-15863042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:176-407
               
               
               Cow position:chr19:10093029-10093260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:176-407
               
               
               Cow position:chr19:39623051-39622836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):154, 76

               
               
               Conread position:176-443
               
               
               Cow position:chr19:42205672-42205932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:176-448
               
               
               Cow position:chr19:7637503-7637227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:176-448
               
               
               Cow position:chr19:31595033-31595309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:178-446
               
               
               Cow position:chr19:12748029-12747768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:180-448
               
               
               Cow position:chr19:56150329-56150055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 73

               
               
               Conread position:182-442
               
               
               Cow position:chr19:20310890-20310631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:182-448
               
               
               Cow position:chr19:2589252-2589517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:184-448
               
               
               Cow position:chr19:53243731-53243467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:187-444
               
               
               Cow position:chr19:25852087-25851828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):14, 236

               
               
               Conread position:190-444
               
               
               Cow position:chr19:25865176-25864920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):11, 233

               
               
               Conread position:191-394
               
               
               Cow position:chr19:53953895-53953706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:191-448
               
               
               Cow position:chr19:13129632-13129884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):110, 58

               
               
               Conread position:195-448
               
               
               Cow position:chr19:11191869-11191608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 246

               
               
               Conread position:195-448
               
               
               Cow position:chr19:47187298-47187047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:197-448
               
               
               Cow position:chr19:22799327-22799069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):65, 127

               
               
               Conread position:201-448
               
               
               Cow position:chr19:6531651-6531895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:211-429
               
               
               Cow position:chr19:42746561-42746347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:214-431
               
               
               Cow position:chr19:13441969-13442191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):52, 110

               
               
               Conread position:216-448
               
               
               Cow position:chr19:22134370-22134141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:218-398
               
               
               Cow position:chr19:37423499-37423310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 50

               
               
               Conread position:220-448
               
               
               Cow position:chr19:22154082-22153837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 162

               
               
               Conread position:223-448
               
               
               Cow position:chr19:51621401-51621172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:226-448
               
               
               Cow position:chr19:33290267-33290492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:229-447
               
               
               Cow position:chr19:11424521-11424308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 31

               
               
               Conread position:229-448
               
               
               Cow position:chr19:43291836-43292059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):93, 39

               
               
               Conread position:231-448
               
               
               Cow position:chr19:32506320-32506109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):71, 29

               
               
               Conread position:231-448
               
               
               Cow position:chr19:51285416-51285648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 217

               
               
               Conread position:232-446
               
               
               Cow position:chr19:4329256-4329043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:234-448
               
               
               Cow position:chr19:25526079-25526292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:239-448
               
               
               Cow position:chr19:33116391-33116605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 199

               
               
               Conread position:241-442
               
               
               Cow position:chr19:1552035-1552234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:243-448
               
               
               Cow position:chr19:3216823-3217023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:271-448
               
               
               Cow position:chr19:55957745-55957561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:273-448
               
               
               Cow position:chr19:47859484-47859307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:275-445
               
               
               Cow position:chr19:39587692-39587520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 124

               
               
               Conread position:275-448
               
               
               Cow position:chr19:10173283-10173104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:275-448
               
               
               Cow position:chr19:22450104-22449918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 171

               
               
               Conread position:275-448
               
               
               Cow position:chr19:55394739-55394909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:279-448
               
               
               Cow position:chr19:4800580-4800750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:279-448
               
               
               Cow position:chr19:21816799-21816975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 161

               
               
               Conread position:279-448
               
               
               Cow position:chr19:39385200-39385033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:286-448
               
               
               Cow position:chr19:50682595-50682434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:287-448
               
               
               Cow position:chr19:7404535-7404368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:287-448
               
               
               Cow position:chr19:46094794-46094628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:300-448
               
               
               Cow position:chr19:24085797-24085940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:300-448
               
               
               Cow position:chr19:52750901-52750750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:304-448
               
               
               Cow position:chr19:4511652-4511505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:312-447
               
               
               Cow position:chr19:10971225-10971090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:315-447
               
               
               Cow position:chr19:21043240-21043375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:330-448
               
               
               Cow position:chr19:39649186-39649067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:1-145
               
               
               Cow position:chr2:11696740-11696883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:1-448
               
               
               Cow position:chr2:27338179-27337755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:2-389
               
               
               Cow position:chr2:32406277-32406642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:3-448
               
               
               Cow position:chr2:11616657-11617115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 78

               
               
               Conread position:4-442
               
               
               Cow position:chr2:14465986-14465544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:4-448
               
               
               Cow position:chr2:26102356-26102787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 146

               
               
               Conread position:7-443
               
               
               Cow position:chr2:18620970-18621425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 208

               
               
               Conread position:7-448
               
               
               Cow position:chr2:32417261-32416841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 94

               
               
               Conread position:8-448
               
               
               Cow position:chr2:54700026-54700476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:11-360
               
               
               Cow position:chr2:15216202-15216553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 133

               
               
               Conread position:23-448
               
               
               Cow position:chr2:45469623-45470027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 69

               
               
               Conread position:82-448
               
               
               Cow position:chr2:45881117-45880756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:99-439
               
               
               Cow position:chr2:47048088-47047741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:99-446
               
               
               Cow position:chr2:50580036-50580382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 306

               
               
               Conread position:104-447
               
               
               Cow position:chr2:4384212-4383878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):197, 31

               
               
               Conread position:111-446
               
               
               Cow position:chr2:80115791-80116115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 49

               
               
               Conread position:112-448
               
               
               Cow position:chr2:15059382-15059042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:113-448
               
               
               Cow position:chr2:42969780-42970134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):112, 19

               
               
               Conread position:123-395
               
               
               Cow position:chr2:67596322-67596055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):81, 51

               
               
               Conread position:124-446
               
               
               Cow position:chr2:27173062-27173387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:133-410
               
               
               Cow position:chr2:11900135-11900411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:134-448
               
               
               Cow position:chr2:57393590-57393272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):132, 25

               
               
               Conread position:135-436
               
               
               Cow position:chr2:51824633-51824933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 125

               
               
               Conread position:136-443
               
               
               Cow position:chr2:81927563-81927869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:138-406
               
               
               Cow position:chr2:14749301-14749567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:140-442
               
               
               Cow position:chr2:27076423-27076724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):17, 139

               
               
               Conread position:143-443
               
               
               Cow position:chr2:50408412-50408691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:143-448
               
               
               Cow position:chr2:62978950-62978653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:144-445
               
               
               Cow position:chr2:23271211-23270916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):157, 8

               
               
               Conread position:144-448
               
               
               Cow position:chr2:24270942-24271248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 12

               
               
               Conread position:146-431
               
               
               Cow position:chr2:28653812-28653526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:149-445
               
               
               Cow position:chr2:333356-333085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):13, 8

               
               
               Conread position:151-448
               
               
               Cow position:chr2:66480452-66480166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:154-445
               
               
               Cow position:chr2:62685362-62685658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:155-448
               
               
               Cow position:chr2:82019385-82019107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 58

               
               
               Conread position:157-448
               
               
               Cow position:chr2:15674274-15674563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 125

               
               
               Conread position:157-448
               
               
               Cow position:chr2:64322982-64323258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):144, 35

               
               
               Conread position:160-448
               
               
               Cow position:chr2:24709609-24709331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 12

               
               
               Conread position:161-438
               
               
               Cow position:chr2:61187391-61187123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:161-448
               
               
               Cow position:chr2:18858403-18858124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:161-448
               
               
               Cow position:chr2:40728100-40728370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:161-448
               
               
               Cow position:chr2:55632508-55632796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:162-371
               
               
               Cow position:chr2:46734189-46734400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 115

               
               
               Conread position:163-402
               
               
               Cow position:chr2:48617711-48617955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:163-438
               
               
               Cow position:chr2:73466781-73466514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:163-448
               
               
               Cow position:chr2:39815553-39815264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 160

               
               
               Conread position:164-447
               
               
               Cow position:chr2:61485368-61485642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:164-448
               
               
               Cow position:chr2:47098201-47097919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:165-443
               
               
               Cow position:chr2:17940551-17940271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 36

               
               
               Conread position:165-448
               
               
               Cow position:chr2:13579978-13580256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 224

               
               
               Conread position:165-448
               
               
               Cow position:chr2:26438991-26438704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:165-448
               
               
               Cow position:chr2:33262881-33262593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:165-448
               
               
               Cow position:chr2:51594500-51594785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr2:69250941-69250645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:166-388
               
               
               Cow position:chr2:23712627-23712845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:166-406
               
               
               Cow position:chr2:43596434-43596195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):96, 138

               
               
               Conread position:166-406
               
               
               Cow position:chr2:82648068-82647843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):135, 31

               
               
               Conread position:166-415
               
               
               Cow position:chr2:6883963-6884213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:166-432
               
               
               Cow position:chr2:38659046-38658776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):96, 87

               
               
               Conread position:166-443
               
               
               Cow position:chr2:42255167-42255450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:166-443
               
               
               Cow position:chr2:45462837-45462564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:166-445
               
               
               Cow position:chr2:86296501-86296781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:166-447
               
               
               Cow position:chr2:14806598-14806322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):164, 33

               
               
               Conread position:166-447
               
               
               Cow position:chr2:16514525-16514802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:166-448
               
               
               Cow position:chr2:22003-21715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 121

               
               
               Conread position:166-448
               
               
               Cow position:chr2:192723-192446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:166-448
               
               
               Cow position:chr2:988427-988713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:166-448
               
               
               Cow position:chr2:13582320-13582604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 62

               
               
               Conread position:166-448
               
               
               Cow position:chr2:21171134-21171401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr2:29268800-29269088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 23

               
               
               Conread position:166-448
               
               
               Cow position:chr2:36007840-36007566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:166-448
               
               
               Cow position:chr2:39263228-39263510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):138, 45

               
               
               Conread position:166-448
               
               
               Cow position:chr2:43473926-43474195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr2:52344498-52344771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 94

               
               
               Conread position:166-448
               
               
               Cow position:chr2:53533071-53532792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr2:69238009-69238299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:166-448
               
               
               Cow position:chr2:70945134-70945424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):30, 133

               
               
               Conread position:166-448
               
               
               Cow position:chr2:71624640-71624369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:167-447
               
               
               Cow position:chr2:72056720-72056439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:167-448
               
               
               Cow position:chr2:41954616-41954906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:167-448
               
               
               Cow position:chr2:50445631-50445922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):29, 158

               
               
               Conread position:168-441
               
               
               Cow position:chr2:27600807-27600532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 157

               
               
               Conread position:168-448
               
               
               Cow position:chr2:41185209-41185489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:170-447
               
               
               Cow position:chr2:45936213-45935941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:172-436
               
               
               Cow position:chr2:47072933-47073202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):29, 71

               
               
               Conread position:172-446
               
               
               Cow position:chr2:13684448-13684717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 122

               
               
               Conread position:172-447
               
               
               Cow position:chr2:27358784-27359066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:172-448
               
               
               Cow position:chr2:43835821-43835539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 154

               
               
               Conread position:172-448
               
               
               Cow position:chr2:45439197-45439459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:172-448
               
               
               Cow position:chr2:51799579-51799302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:173-447
               
               
               Cow position:chr2:14556008-14555729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:173-448
               
               
               Cow position:chr2:1303695-1303969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:174-448
               
               
               Cow position:chr2:30642926-30642643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:176-346
               
               
               Cow position:chr2:39663140-39663317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:176-445
               
               
               Cow position:chr2:80797421-80797682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:176-447
               
               
               Cow position:chr2:28118247-28118520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:176-448
               
               
               Cow position:chr2:19212297-19212035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 84

               
               
               Conread position:176-448
               
               
               Cow position:chr2:21416059-21416320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 85

               
               
               Conread position:176-448
               
               
               Cow position:chr2:46909697-46909416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):26, 153

               
               
               Conread position:177-407
               
               
               Cow position:chr2:85930204-85930437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:178-446
               
               
               Cow position:chr2:21383109-21382832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 146

               
               
               Conread position:178-448
               
               
               Cow position:chr2:11696878-11697147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:178-448
               
               
               Cow position:chr2:41057754-41057503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):152, 26

               
               
               Conread position:180-443
               
               
               Cow position:chr2:1918538-1918284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:180-448
               
               
               Cow position:chr2:85339710-85339438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):82, 141

               
               
               Conread position:181-445
               
               
               Cow position:chr2:20940190-20940457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):20, 79

               
               
               Conread position:182-448
               
               
               Cow position:chr2:6038756-6039033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):16, 87

               
               
               Conread position:183-448
               
               
               Cow position:chr2:46194548-46194815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:184-431
               
               
               Cow position:chr2:25964731-25964482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:187-424
               
               
               Cow position:chr2:50777532-50777768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:187-448
               
               
               Cow position:chr2:74249470-74249208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:188-448
               
               
               Cow position:chr2:62644357-62644607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:192-431
               
               
               Cow position:chr2:38272392-38272160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:192-445
               
               
               Cow position:chr2:41461126-41461386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):62, 132

               
               
               Conread position:193-448
               
               
               Cow position:chr2:80963881-80963626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 72

               
               
               Conread position:195-431
               
               
               Cow position:chr2:78116577-78116340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:195-438
               
               
               Cow position:chr2:15249949-15250192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:195-448
               
               
               Cow position:chr2:34535392-34535137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 64

               
               
               Conread position:196-360
               
               
               Cow position:chr2:48864214-48864049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:196-448
               
               
               Cow position:chr2:81349118-81348857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:198-443
               
               
               Cow position:chr2:46020674-46020920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 107

               
               
               Conread position:203-448
               
               
               Cow position:chr2:55960834-55960591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):98, 57

               
               
               Conread position:205-441
               
               
               Cow position:chr2:60463040-60462809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:205-441
               
               
               Cow position:chr2:60468419-60468188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:212-431
               
               
               Cow position:chr2:59915004-59915220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:214-448
               
               
               Cow position:chr2:19294386-19294614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):138, 46

               
               
               Conread position:215-448
               
               
               Cow position:chr2:44232669-44232432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:216-448
               
               
               Cow position:chr2:69823374-69823609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:223-448
               
               
               Cow position:chr2:46111591-46111352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 209

               
               
               Conread position:223-448
               
               
               Cow position:chr2:67313886-67313669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:225-447
               
               
               Cow position:chr2:3309233-3309006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:225-448
               
               
               Cow position:chr2:61421377-61421148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:228-443
               
               
               Cow position:chr2:49249022-49248811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:228-448
               
               
               Cow position:chr2:16505678-16505456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:228-448
               
               
               Cow position:chr2:43789904-43790120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:235-388
               
               
               Cow position:chr2:41443211-41443365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:236-448
               
               
               Cow position:chr2:26850969-26851185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:239-448
               
               
               Cow position:chr2:70495081-70495292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:246-443
               
               
               Cow position:chr2:46343326-46343129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:266-448
               
               
               Cow position:chr2:69199478-69199300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:271-432
               
               
               Cow position:chr2:45537592-45537431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:271-448
               
               
               Cow position:chr2:46119920-46119744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:275-448
               
               
               Cow position:chr2:38785758-38785579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:275-448
               
               
               Cow position:chr2:83410355-83410530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:276-448
               
               
               Cow position:chr2:47055754-47055928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:279-442
               
               
               Cow position:chr2:85498950-85498780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 152

               
               
               Conread position:287-447
               
               
               Cow position:chr2:66563376-66563212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 150

               
               
               Conread position:291-447
               
               
               Cow position:chr2:19156324-19156165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):10, 145

               
               
               Conread position:300-448
               
               
               Cow position:chr2:58563959-58563812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:310-448
               
               
               Cow position:chr2:387895-387756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:312-448
               
               
               Cow position:chr2:81894462-81894321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 128

               
               
               Conread position:320-448
               
               
               Cow position:chr2:29734712-29734846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):10, 118

               
               
               Conread position:1-137
               
               
               Cow position:chr20:23871170-23871034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:1-148
               
               
               Cow position:chr20:7592418-7592272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:5-448
               
               
               Cow position:chr20:34776786-34777242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:7-394
               
               
               Cow position:chr20:22007107-22007508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 269

               
               
               Conread position:7-429
               
               
               Cow position:chr20:6848256-6848675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 58

               
               
               Conread position:7-444
               
               
               Cow position:chr20:31077187-31077611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 94

               
               
               Conread position:8-429
               
               
               Cow position:chr20:26469426-26469018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 118

               
               
               Conread position:11-444
               
               
               Cow position:chr20:14735316-14735727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 32

               
               
               Conread position:11-448
               
               
               Cow position:chr20:13652708-13652305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 62

               
               
               Conread position:11-448
               
               
               Cow position:chr20:40512132-40511694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 163

               
               
               Conread position:62-396
               
               
               Cow position:chr20:29633314-29632990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):139, 73

               
               
               Conread position:74-446
               
               
               Cow position:chr20:20983694-20984052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:97-448
               
               
               Cow position:chr20:15235475-15235823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:112-448
               
               
               Cow position:chr20:3599669-3599333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 163

               
               
               Conread position:125-447
               
               
               Cow position:chr20:34918017-34918332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):38, 6

               
               
               Conread position:132-448
               
               
               Cow position:chr20:6096737-6096433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:134-445
               
               
               Cow position:chr20:37200106-37200422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:141-442
               
               
               Cow position:chr20:4621584-4621284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:144-431
               
               
               Cow position:chr20:27339823-27340109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:146-445
               
               
               Cow position:chr20:24002085-24002375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:146-448
               
               
               Cow position:chr20:13967503-13967194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 118

               
               
               Conread position:152-448
               
               
               Cow position:chr20:16715163-16715453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:155-447
               
               
               Cow position:chr20:25686581-25686287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):107, 10

               
               
               Conread position:160-448
               
               
               Cow position:chr20:22959569-22959285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:160-448
               
               
               Cow position:chr20:33532083-33532365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:161-439
               
               
               Cow position:chr20:21714524-21714811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:161-447
               
               
               Cow position:chr20:6423737-6424032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):39, 167

               
               
               Conread position:162-448
               
               
               Cow position:chr20:6240755-6240458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 166

               
               
               Conread position:165-438
               
               
               Cow position:chr20:15068921-15069194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:165-445
               
               
               Cow position:chr20:11923462-11923187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:165-447
               
               
               Cow position:chr20:6903106-6903375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):230, 46

               
               
               Conread position:166-394
               
               
               Cow position:chr20:7806784-7806551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):33, 228

               
               
               Conread position:166-431
               
               
               Cow position:chr20:27314460-27314716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:166-442
               
               
               Cow position:chr20:32636787-32636516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:166-443
               
               
               Cow position:chr20:10200119-10200403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:166-443
               
               
               Cow position:chr20:15761170-15760892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 157

               
               
               Conread position:166-445
               
               
               Cow position:chr20:31261511-31261783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):137, 82

               
               
               Conread position:166-447
               
               
               Cow position:chr20:11453576-11453297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:166-448
               
               
               Cow position:chr20:9536912-9537201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:166-448
               
               
               Cow position:chr20:18185357-18185629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr20:20201770-20202056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:166-448
               
               
               Cow position:chr20:33435387-33435102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:167-440
               
               
               Cow position:chr20:7659430-7659162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:167-448
               
               
               Cow position:chr20:24521530-24521811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:167-448
               
               
               Cow position:chr20:35797385-35797674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 156

               
               
               Conread position:168-442
               
               
               Cow position:chr20:35907265-35907000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):137, 9

               
               
               Conread position:168-444
               
               
               Cow position:chr20:19751089-19751365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:168-448
               
               
               Cow position:chr20:21928678-21928967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:170-402
               
               
               Cow position:chr20:10468853-10469080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:170-446
               
               
               Cow position:chr20:40256752-40257030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:170-448
               
               
               Cow position:chr20:42469548-42469823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):160, 51

               
               
               Conread position:171-404
               
               
               Cow position:chr20:32153294-32153522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:171-433
               
               
               Cow position:chr20:26679907-26680172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:171-448
               
               
               Cow position:chr20:6890488-6890776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 162

               
               
               Conread position:172-365
               
               
               Cow position:chr20:41119705-41119891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):158, 19

               
               
               Conread position:172-445
               
               
               Cow position:chr20:17251495-17251777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:172-448
               
               
               Cow position:chr20:6054728-6054447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 90

               
               
               Conread position:172-448
               
               
               Cow position:chr20:9473830-9473550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:172-448
               
               
               Cow position:chr20:12996225-12995943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:172-448
               
               
               Cow position:chr20:34001612-34001327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 152

               
               
               Conread position:172-448
               
               
               Cow position:chr20:35145791-35146083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 276

               
               
               Conread position:172-448
               
               
               Cow position:chr20:36779946-36779667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 88

               
               
               Conread position:173-448
               
               
               Cow position:chr20:22704073-22704357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 151

               
               
               Conread position:176-431
               
               
               Cow position:chr20:3781639-3781377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:176-448
               
               
               Cow position:chr20:11482351-11482072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:176-448
               
               
               Cow position:chr20:23065044-23064768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:178-407
               
               
               Cow position:chr20:8020685-8020919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):84, 145

               
               
               Conread position:181-448
               
               
               Cow position:chr20:38551167-38551434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:185-448
               
               
               Cow position:chr20:15566034-15565765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):14, 165

               
               
               Conread position:190-448
               
               
               Cow position:chr20:28067623-28067357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:195-420
               
               
               Cow position:chr20:34107924-34108147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:195-448
               
               
               Cow position:chr20:6602849-6603103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):85, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr20:34098150-34097892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:201-436
               
               
               Cow position:chr20:37165540-37165764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):100, 67

               
               
               Conread position:202-448
               
               
               Cow position:chr20:7550056-7550300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:209-445
               
               
               Cow position:chr20:37272538-37272774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:217-448
               
               
               Cow position:chr20:3321308-3321070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:218-448
               
               
               Cow position:chr20:28831794-28832033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:220-446
               
               
               Cow position:chr20:14100605-14100373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:223-448
               
               
               Cow position:chr20:41403405-41403639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:230-448
               
               
               Cow position:chr20:15312502-15312732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):32, 101

               
               
               Conread position:232-440
               
               
               Cow position:chr20:34084915-34085120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:232-448
               
               
               Cow position:chr20:5636325-5636543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:232-448
               
               
               Cow position:chr20:7623208-7623002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):119, 25

               
               
               Conread position:233-441
               
               
               Cow position:chr20:21761622-21761829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:234-446
               
               
               Cow position:chr20:1575946-1576154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:234-448
               
               
               Cow position:chr20:13025761-13025552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:240-448
               
               
               Cow position:chr20:4334667-4334468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:242-446
               
               
               Cow position:chr20:14540207-14540404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:246-448
               
               
               Cow position:chr20:22484719-22484925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:272-448
               
               
               Cow position:chr20:11188921-11188739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:287-448
               
               
               Cow position:chr20:23541257-23541095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:287-448
               
               
               Cow position:chr20:34901468-34901634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:293-448
               
               
               Cow position:chr20:13794894-13795045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:301-446
               
               
               Cow position:chr20:5078535-5078687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 139

               
               
               Conread position:301-448
               
               
               Cow position:chr20:28594197-28594348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:306-446
               
               
               Cow position:chr20:16491991-16492132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:312-447
               
               
               Cow position:chr20:37357530-37357669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:312-448
               
               
               Cow position:chr20:35192701-35192834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:313-430
               
               
               Cow position:chr20:11498436-11498556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:322-448
               
               
               Cow position:chr20:23506536-23506408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:334-448
               
               
               Cow position:chr20:10772150-10772268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:7-448
               
               
               Cow position:chr21:23586535-23586965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 79

               
               
               Conread position:8-420
               
               
               Cow position:chr21:21143508-21143958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 326

               
               
               Conread position:11-428
               
               
               Cow position:chr21:39403892-39403471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):155, 84

               
               
               Conread position:14-445
               
               
               Cow position:chr21:2786114-2785696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:25-448
               
               
               Cow position:chr21:6102632-6102178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 308

               
               
               Conread position:32-447
               
               
               Cow position:chr21:24764964-24765364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 71

               
               
               Conread position:53-448
               
               
               Cow position:chr21:30607385-30607004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 75

               
               
               Conread position:81-317
               
               
               Cow position:chr21:24758789-24759023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):120, 57

               
               
               Conread position:82-448
               
               
               Cow position:chr21:41597528-41597894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 325

               
               
               Conread position:101-407
               
               
               Cow position:chr21:37361748-37361434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 174

               
               
               Conread position:105-447
               
               
               Cow position:chr21:34159689-34160032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 261

               
               
               Conread position:112-438
               
               
               Cow position:chr21:31691225-31691558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:112-448
               
               
               Cow position:chr21:20262590-20262252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:131-448
               
               
               Cow position:chr21:10633892-10633554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:132-438
               
               
               Cow position:chr21:36795369-36795676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:132-448
               
               
               Cow position:chr21:3817982-3818292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:133-402
               
               
               Cow position:chr21:33791602-33791328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:134-448
               
               
               Cow position:chr21:8206557-8206855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:134-448
               
               
               Cow position:chr21:15976410-15976716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:138-448
               
               
               Cow position:chr21:4399569-4399886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:142-448
               
               
               Cow position:chr21:13897966-13898271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:144-406
               
               
               Cow position:chr21:393802-394061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:144-445
               
               
               Cow position:chr21:27743522-27743829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:144-448
               
               
               Cow position:chr21:33729214-33729513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:144-448
               
               
               Cow position:chr21:41878257-41878554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:152-448
               
               
               Cow position:chr21:32237081-32237365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:154-447
               
               
               Cow position:chr21:42500821-42501126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:154-448
               
               
               Cow position:chr21:4282082-4281792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:157-443
               
               
               Cow position:chr21:19083808-19083521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:158-448
               
               
               Cow position:chr21:15584613-15584336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:159-438
               
               
               Cow position:chr21:7709956-7710237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 126

               
               
               Conread position:160-447
               
               
               Cow position:chr21:33997428-33997145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:160-448
               
               
               Cow position:chr21:33514-33802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:160-448
               
               
               Cow position:chr21:5455189-5454908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):141, 41

               
               
               Conread position:160-448
               
               
               Cow position:chr21:26244727-26244997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:161-448
               
               
               Cow position:chr21:6713742-6713442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:161-448
               
               
               Cow position:chr21:30849145-30848858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:161-448
               
               
               Cow position:chr21:41620913-41621208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 164

               
               
               Conread position:163-404
               
               
               Cow position:chr21:42905582-42905337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:163-420
               
               
               Cow position:chr21:40058602-40058864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):99, 111

               
               
               Conread position:164-317
               
               
               Cow position:chr21:23478922-23478768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:164-448
               
               
               Cow position:chr21:395673-395951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 96

               
               
               Conread position:165-410
               
               
               Cow position:chr21:46973330-46973086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:165-431
               
               
               Cow position:chr21:912168-911899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 5

               
               
               Conread position:165-431
               
               
               Cow position:chr21:15545565-15545300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):136, 39

               
               
               Conread position:165-448
               
               
               Cow position:chr21:3585558-3585285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:165-448
               
               
               Cow position:chr21:23322283-23321995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 36

               
               
               Conread position:166-396
               
               
               Cow position:chr21:48484642-48484416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):155, 35

               
               
               Conread position:166-405
               
               
               Cow position:chr21:36793681-36793932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:166-406
               
               
               Cow position:chr21:24796239-24795997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:166-431
               
               
               Cow position:chr21:42913947-42913676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 155

               
               
               Conread position:166-437
               
               
               Cow position:chr21:21480380-21480112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:166-443
               
               
               Cow position:chr21:16696169-16696445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):135, 43

               
               
               Conread position:166-443
               
               
               Cow position:chr21:32535775-32536055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:166-445
               
               
               Cow position:chr21:19258625-19258902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 161

               
               
               Conread position:166-446
               
               
               Cow position:chr21:42384304-42384589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:166-447
               
               
               Cow position:chr21:5971037-5970756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:166-447
               
               
               Cow position:chr21:8549480-8549764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:166-447
               
               
               Cow position:chr21:23606473-23606754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:166-448
               
               
               Cow position:chr21:9416041-9416333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 280

               
               
               Conread position:166-448
               
               
               Cow position:chr21:10727080-10727360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 100

               
               
               Conread position:166-448
               
               
               Cow position:chr21:17511575-17511859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:166-448
               
               
               Cow position:chr21:20160483-20160759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 94

               
               
               Conread position:166-448
               
               
               Cow position:chr21:33983011-33982724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:166-448
               
               
               Cow position:chr21:39401399-39401676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):136, 35

               
               
               Conread position:167-430
               
               
               Cow position:chr21:14760380-14760640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:167-437
               
               
               Cow position:chr21:45330140-45329874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):136, 65

               
               
               Conread position:167-438
               
               
               Cow position:chr21:42145716-42145992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):32, 156

               
               
               Conread position:167-441
               
               
               Cow position:chr21:35897821-35897563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:169-442
               
               
               Cow position:chr21:48176628-48176901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 102

               
               
               Conread position:170-445
               
               
               Cow position:chr21:23984481-23984200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:170-448
               
               
               Cow position:chr21:8985352-8985635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:172-393
               
               
               Cow position:chr21:34738403-34738638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:172-446
               
               
               Cow position:chr21:37345300-37345020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 121

               
               
               Conread position:172-448
               
               
               Cow position:chr21:20925701-20925422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):90, 120

               
               
               Conread position:172-448
               
               
               Cow position:chr21:26648199-26647925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:172-448
               
               
               Cow position:chr21:28881947-28882221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:172-448
               
               
               Cow position:chr21:39888939-39888666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:173-448
               
               
               Cow position:chr21:31253341-31253620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):28, 156

               
               
               Conread position:173-448
               
               
               Cow position:chr21:31277627-31277893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:175-448
               
               
               Cow position:chr21:3813675-3813400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:176-361
               
               
               Cow position:chr21:13163702-13163887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:176-407
               
               
               Cow position:chr21:15445270-15445030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:176-444
               
               
               Cow position:chr21:38449643-38449366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:176-446
               
               
               Cow position:chr21:10263852-10264114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:176-448
               
               
               Cow position:chr21:5426755-5427023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:176-448
               
               
               Cow position:chr21:13738380-13738643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:176-448
               
               
               Cow position:chr21:17643161-17642901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:176-448
               
               
               Cow position:chr21:18940748-18940493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):136, 26

               
               
               Conread position:177-424
               
               
               Cow position:chr21:18494776-18495030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):85, 146

               
               
               Conread position:178-438
               
               
               Cow position:chr21:45915893-45915641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:178-447
               
               
               Cow position:chr21:5566800-5567069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 180

               
               
               Conread position:178-448
               
               
               Cow position:chr21:13128280-13128013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:178-448
               
               
               Cow position:chr21:28923937-28924192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:178-448
               
               
               Cow position:chr21:34391159-34390892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 28

               
               
               Conread position:179-446
               
               
               Cow position:chr21:1464040-1464311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:179-446
               
               
               Cow position:chr21:40589671-40589401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):24, 144

               
               
               Conread position:179-448
               
               
               Cow position:chr21:28989431-28989693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:183-448
               
               
               Cow position:chr21:17174956-17175230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 207

               
               
               Conread position:189-444
               
               
               Cow position:chr21:8235722-8235476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:190-448
               
               
               Cow position:chr21:18790733-18790479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:190-448
               
               
               Cow position:chr21:33562838-33563091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:192-448
               
               
               Cow position:chr21:32339912-32339657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):6, 69

               
               
               Conread position:198-448
               
               
               Cow position:chr21:10000912-10001158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:201-448
               
               
               Cow position:chr21:18065089-18064831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:216-437
               
               
               Cow position:chr21:10823403-10823638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 192

               
               
               Conread position:216-447
               
               
               Cow position:chr21:45921209-45920976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:219-448
               
               
               Cow position:chr21:24642374-24642604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:220-448
               
               
               Cow position:chr21:10005032-10004802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:223-431
               
               
               Cow position:chr21:42007603-42007394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:224-442
               
               
               Cow position:chr21:39809757-39809971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:228-448
               
               
               Cow position:chr21:957529-957756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:228-448
               
               
               Cow position:chr21:11250727-11250956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 182

               
               
               Conread position:228-448
               
               
               Cow position:chr21:11359899-11360119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:228-448
               
               
               Cow position:chr21:12462109-12461884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:229-447
               
               
               Cow position:chr21:20152810-20153038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 39

               
               
               Conread position:230-446
               
               
               Cow position:chr21:17875332-17875112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:230-448
               
               
               Cow position:chr21:29978899-29978677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 96

               
               
               Conread position:230-448
               
               
               Cow position:chr21:34736894-34737113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:243-439
               
               
               Cow position:chr21:18414926-18415127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:244-448
               
               
               Cow position:chr21:34722913-34722705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:246-446
               
               
               Cow position:chr21:6997820-6998023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:247-448
               
               
               Cow position:chr21:25629031-25628827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:262-431
               
               
               Cow position:chr21:9980071-9979903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:265-448
               
               
               Cow position:chr21:30835260-30835448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:275-437
               
               
               Cow position:chr21:4568193-4568357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:276-448
               
               
               Cow position:chr21:10561675-10561500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:287-448
               
               
               Cow position:chr21:37014483-37014323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:288-431
               
               
               Cow position:chr21:47714086-47713937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:291-448
               
               
               Cow position:chr21:33360110-33359952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:301-447
               
               
               Cow position:chr21:22720162-22720310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:312-442
               
               
               Cow position:chr21:7391332-7391200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:312-447
               
               
               Cow position:chr21:977200-977066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:312-448
               
               
               Cow position:chr21:47363794-47363653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:316-447
               
               
               Cow position:chr21:28919576-28919441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:1-446
               
               
               Cow position:chr22:10420607-10421046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 160

               
               
               Conread position:1-448
               
               
               Cow position:chr22:26658607-26659067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 283

               
               
               Conread position:7-448
               
               
               Cow position:chr22:25743362-25742933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:8-445
               
               
               Cow position:chr22:35533770-35533338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 35

               
               
               Conread position:8-446
               
               
               Cow position:chr22:30963715-30964142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 29

               
               
               Conread position:11-448
               
               
               Cow position:chr22:28352071-28351640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 84

               
               
               Conread position:12-355
               
               
               Cow position:chr22:19139874-19139526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:29-448
               
               
               Cow position:chr22:34750262-34750691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 259

               
               
               Conread position:41-441
               
               
               Cow position:chr22:3325190-3325594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 133

               
               
               Conread position:50-447
               
               
               Cow position:chr22:16532714-16533089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 94

               
               
               Conread position:50-448
               
               
               Cow position:chr22:19048185-19047799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 124

               
               
               Conread position:59-400
               
               
               Cow position:chr22:4026247-4026574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):62, 43

               
               
               Conread position:78-446
               
               
               Cow position:chr22:22997110-22997491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:79-442
               
               
               Cow position:chr22:12777921-12777581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):183, 57

               
               
               Conread position:90-441
               
               
               Cow position:chr22:22861260-22860902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:104-443
               
               
               Cow position:chr22:1601852-1602201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:104-447
               
               
               Cow position:chr22:12259257-12258918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:112-425
               
               
               Cow position:chr22:26316156-26316464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:131-448
               
               
               Cow position:chr22:29641809-29642130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:132-448
               
               
               Cow position:chr22:8882720-8883031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:133-445
               
               
               Cow position:chr22:5042017-5042327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 145

               
               
               Conread position:135-427
               
               
               Cow position:chr22:1822170-1821875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 9

               
               
               Conread position:137-448
               
               
               Cow position:chr22:13769190-13769487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):165, 20

               
               
               Conread position:138-448
               
               
               Cow position:chr22:36539961-36539647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:140-448
               
               
               Cow position:chr22:534199-534515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 301

               
               
               Conread position:142-443
               
               
               Cow position:chr22:6360780-6360475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 124

               
               
               Conread position:143-396
               
               
               Cow position:chr22:14601220-14601468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:144-448
               
               
               Cow position:chr22:3960582-3960267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:146-444
               
               
               Cow position:chr22:2502548-2502838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:146-446
               
               
               Cow position:chr22:20626552-20626851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:149-402
               
               
               Cow position:chr22:30472759-30473017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:151-448
               
               
               Cow position:chr22:28058324-28058034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 50

               
               
               Conread position:152-440
               
               
               Cow position:chr22:37201575-37201857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:159-405
               
               
               Cow position:chr22:30115370-30115620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 157

               
               
               Conread position:161-431
               
               
               Cow position:chr22:26490188-26490467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:161-442
               
               
               Cow position:chr22:16251836-16251560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):133, 40

               
               
               Conread position:161-448
               
               
               Cow position:chr22:31870520-31870235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):154, 41

               
               
               Conread position:162-448
               
               
               Cow position:chr22:16620902-16621192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 19

               
               
               Conread position:162-448
               
               
               Cow position:chr22:26339487-26339770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:163-364
               
               
               Cow position:chr22:2105526-2105320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:163-427
               
               
               Cow position:chr22:34894701-34894969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:163-448
               
               
               Cow position:chr22:1975341-1975630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:163-448
               
               
               Cow position:chr22:37324274-37324560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:164-448
               
               
               Cow position:chr22:15490389-15490670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):37, 105

               
               
               Conread position:165-437
               
               
               Cow position:chr22:29091140-29090884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):109, 5

               
               
               Conread position:165-448
               
               
               Cow position:chr22:4292504-4292767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):247, 33

               
               
               Conread position:165-448
               
               
               Cow position:chr22:7153620-7153900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:165-448
               
               
               Cow position:chr22:17813959-17814249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:165-448
               
               
               Cow position:chr22:30483643-30483931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:165-448
               
               
               Cow position:chr22:34398724-34398440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr22:41045183-41044889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:166-335
               
               
               Cow position:chr22:8329281-8329450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:166-405
               
               
               Cow position:chr22:8840319-8840564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:166-424
               
               
               Cow position:chr22:9734588-9734846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:166-427
               
               
               Cow position:chr22:26106790-26107055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:166-428
               
               
               Cow position:chr22:35753574-35753309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:166-439
               
               
               Cow position:chr22:8412256-8412533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 157

               
               
               Conread position:166-439
               
               
               Cow position:chr22:11038006-11038269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:166-442
               
               
               Cow position:chr22:18654320-18654033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):95, 163

               
               
               Conread position:166-444
               
               
               Cow position:chr22:32894935-32895232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:166-445
               
               
               Cow position:chr22:10603125-10603397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:166-445
               
               
               Cow position:chr22:13735532-13735261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 94

               
               
               Conread position:166-448
               
               
               Cow position:chr22:3301590-3301323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):105, 38

               
               
               Conread position:166-448
               
               
               Cow position:chr22:5337866-5337582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:166-448
               
               
               Cow position:chr22:10302742-10303032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:166-448
               
               
               Cow position:chr22:13688380-13688082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:166-448
               
               
               Cow position:chr22:14924992-14924716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:166-448
               
               
               Cow position:chr22:21567735-21568013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):136, 35

               
               
               Conread position:166-448
               
               
               Cow position:chr22:23856780-23857062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:166-448
               
               
               Cow position:chr22:25943213-25943491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr22:26184428-26184145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 72

               
               
               Conread position:166-448
               
               
               Cow position:chr22:27322051-27322330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:166-448
               
               
               Cow position:chr22:38977580-38977857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 102

               
               
               Conread position:166-448
               
               
               Cow position:chr22:43292170-43291881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:167-443
               
               
               Cow position:chr22:46568156-46567880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:167-446
               
               
               Cow position:chr22:13840875-13841154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:167-448
               
               
               Cow position:chr22:8733589-8733322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:167-448
               
               
               Cow position:chr22:25246643-25246929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:168-429
               
               
               Cow position:chr22:14602661-14602393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:168-437
               
               
               Cow position:chr22:29955265-29954993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:168-446
               
               
               Cow position:chr22:19787945-19787663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 92

               
               
               Conread position:168-446
               
               
               Cow position:chr22:42612192-42612473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):94, 136

               
               
               Conread position:168-448
               
               
               Cow position:chr22:34712448-34712742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:169-406
               
               
               Cow position:chr22:27401280-27401511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:170-446
               
               
               Cow position:chr22:45513784-45513505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):92, 105

               
               
               Conread position:170-447
               
               
               Cow position:chr22:5467632-5467346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:170-448
               
               
               Cow position:chr22:877259-877531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:171-431
               
               
               Cow position:chr22:14143369-14143110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:172-446
               
               
               Cow position:chr22:852767-853035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):29, 128

               
               
               Conread position:172-446
               
               
               Cow position:chr22:11500520-11500793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:172-446
               
               
               Cow position:chr22:30514993-30515271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:172-447
               
               
               Cow position:chr22:32189101-32188839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:172-448
               
               
               Cow position:chr22:645022-644750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 96

               
               
               Conread position:172-448
               
               
               Cow position:chr22:4583308-4583577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:172-448
               
               
               Cow position:chr22:16044691-16044400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:172-448
               
               
               Cow position:chr22:22155339-22155621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):92, 152

               
               
               Conread position:172-448
               
               
               Cow position:chr22:34726412-34726684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:173-448
               
               
               Cow position:chr22:14371906-14372195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):24, 226

               
               
               Conread position:175-447
               
               
               Cow position:chr22:34606334-34606598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):127, 26

               
               
               Conread position:175-448
               
               
               Cow position:chr22:12968328-12968053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 85

               
               
               Conread position:176-445
               
               
               Cow position:chr22:2701970-2702244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 91

               
               
               Conread position:176-445
               
               
               Cow position:chr22:7838347-7838604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:176-448
               
               
               Cow position:chr22:3949983-3950269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):26, 270

               
               
               Conread position:176-448
               
               
               Cow position:chr22:13957908-13957628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 164

               
               
               Conread position:176-448
               
               
               Cow position:chr22:31593119-31592836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):25, 100

               
               
               Conread position:177-448
               
               
               Cow position:chr22:44180336-44180609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:178-445
               
               
               Cow position:chr22:44717455-44717729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:178-448
               
               
               Cow position:chr22:17295184-17294920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:178-448
               
               
               Cow position:chr22:27581193-27581460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):110, 23

               
               
               Conread position:178-448
               
               
               Cow position:chr22:30269159-30269428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:178-448
               
               
               Cow position:chr22:32651251-32651520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:179-429
               
               
               Cow position:chr22:29256569-29256312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):83, 143

               
               
               Conread position:180-448
               
               
               Cow position:chr22:28665015-28665299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):21, 157

               
               
               Conread position:182-448
               
               
               Cow position:chr22:12946418-12946158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:184-440
               
               
               Cow position:chr22:3964935-3965194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:186-448
               
               
               Cow position:chr22:25222149-25221879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:187-439
               
               
               Cow position:chr22:25630020-25629755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):9, 144

               
               
               Conread position:190-448
               
               
               Cow position:chr22:10983099-10983366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:192-448
               
               
               Cow position:chr22:22145986-22146249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:193-445
               
               
               Cow position:chr22:23403882-23403633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 68

               
               
               Conread position:193-448
               
               
               Cow position:chr22:1640549-1640284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):69, 238

               
               
               Conread position:194-448
               
               
               Cow position:chr22:2010560-2010818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:195-446
               
               
               Cow position:chr22:7164716-7164976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):106, 43

               
               
               Conread position:196-434
               
               
               Cow position:chr22:20687056-20687305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:198-448
               
               
               Cow position:chr22:25237376-25237125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 62

               
               
               Conread position:216-441
               
               
               Cow position:chr22:10403713-10403493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:218-401
               
               
               Cow position:chr22:3944959-3945145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:219-446
               
               
               Cow position:chr22:3533734-3533950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:228-445
               
               
               Cow position:chr22:10362849-10363081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:228-448
               
               
               Cow position:chr22:47555639-47555866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 213

               
               
               Conread position:230-431
               
               
               Cow position:chr22:11458621-11458822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):32, 130

               
               
               Conread position:230-446
               
               
               Cow position:chr22:17125379-17125596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:232-448
               
               
               Cow position:chr22:14378885-14378676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:234-447
               
               
               Cow position:chr22:2523763-2523977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:237-445
               
               
               Cow position:chr22:12315615-12315824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:237-446
               
               
               Cow position:chr22:10678181-10677976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:238-448
               
               
               Cow position:chr22:15025299-15025094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:243-448
               
               
               Cow position:chr22:16822915-16823119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:254-447
               
               
               Cow position:chr22:12388908-12389114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 192

               
               
               Conread position:262-445
               
               
               Cow position:chr22:12598915-12599100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:267-447
               
               
               Cow position:chr22:3241863-3241684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:271-446
               
               
               Cow position:chr22:32698597-32698778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 112

               
               
               Conread position:274-444
               
               
               Cow position:chr22:10292801-10292980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 168

               
               
               Conread position:279-448
               
               
               Cow position:chr22:2912737-2912570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:279-448
               
               
               Cow position:chr22:15020557-15020382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 126

               
               
               Conread position:291-448
               
               
               Cow position:chr22:15668617-15668452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:293-448
               
               
               Cow position:chr22:31153815-31153969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:317-446
               
               
               Cow position:chr22:13221993-13222129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:1-140
               
               
               Cow position:chr23:18367300-18367439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:3-448
               
               
               Cow position:chr23:6593105-6592678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:7-396
               
               
               Cow position:chr23:36198855-36199260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 270

               
               
               Conread position:7-448
               
               
               Cow position:chr23:1647229-1647640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):294, 127

               
               
               Conread position:8-448
               
               
               Cow position:chr23:36309028-36309442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 62

               
               
               Conread position:8-448
               
               
               Cow position:chr23:39775322-39775748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:116-447
               
               
               Cow position:chr23:26795218-26794892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:125-448
               
               
               Cow position:chr23:13555729-13555416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:126-442
               
               
               Cow position:chr23:808860-809180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):5, 49

               
               
               Conread position:131-448
               
               
               Cow position:chr23:4562589-4562907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 74

               
               
               Conread position:139-446
               
               
               Cow position:chr23:33711483-33711780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):162, 31

               
               
               Conread position:140-448
               
               
               Cow position:chr23:15287423-15287116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 185

               
               
               Conread position:146-444
               
               
               Cow position:chr23:29242661-29242967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 181

               
               
               Conread position:146-447
               
               
               Cow position:chr23:32309396-32309704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:146-448
               
               
               Cow position:chr23:5162146-5162455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:146-448
               
               
               Cow position:chr23:25675962-25675678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:149-325
               
               
               Cow position:chr23:666389-666215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 9

               
               
               Conread position:149-448
               
               
               Cow position:chr23:37065558-37065871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:151-448
               
               
               Cow position:chr23:2055426-2055726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:152-446
               
               
               Cow position:chr23:29346034-29345744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:157-447
               
               
               Cow position:chr23:27862064-27862350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:158-448
               
               
               Cow position:chr23:14739183-14739464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:160-442
               
               
               Cow position:chr23:4726530-4726810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):6, 50

               
               
               Conread position:160-448
               
               
               Cow position:chr23:14164669-14164376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:163-393
               
               
               Cow position:chr23:344444-344208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:163-445
               
               
               Cow position:chr23:32105608-32105891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):165, 32

               
               
               Conread position:163-448
               
               
               Cow position:chr23:22804456-22804746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:164-401
               
               
               Cow position:chr23:7596598-7596356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):8, 67

               
               
               Conread position:164-447
               
               
               Cow position:chr23:41472348-41472642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):102, 37

               
               
               Conread position:165-420
               
               
               Cow position:chr23:13511469-13511724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:165-439
               
               
               Cow position:chr23:16246480-16246746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:165-442
               
               
               Cow position:chr23:18367432-18367716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:165-446
               
               
               Cow position:chr23:10554275-10553989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 158

               
               
               Conread position:165-446
               
               
               Cow position:chr23:19002332-19002042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):115, 276

               
               
               Conread position:165-447
               
               
               Cow position:chr23:15710339-15710058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):97, 11

               
               
               Conread position:166-365
               
               
               Cow position:chr23:1640548-1640753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:166-431
               
               
               Cow position:chr23:33601783-33601521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:166-440
               
               
               Cow position:chr23:25669333-25669079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:166-443
               
               
               Cow position:chr23:1009664-1009385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:166-447
               
               
               Cow position:chr23:8293238-8293522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 143

               
               
               Conread position:166-447
               
               
               Cow position:chr23:40778000-40778286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 158

               
               
               Conread position:166-448
               
               
               Cow position:chr23:1924096-1923815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:166-448
               
               
               Cow position:chr23:3247325-3247608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:166-448
               
               
               Cow position:chr23:21336752-21336462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:168-445
               
               
               Cow position:chr23:4968780-4968505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:168-446
               
               
               Cow position:chr23:39752853-39753136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 157

               
               
               Conread position:169-448
               
               
               Cow position:chr23:1803534-1803808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:170-447
               
               
               Cow position:chr23:25864941-25864679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:170-448
               
               
               Cow position:chr23:3262758-3262475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:170-448
               
               
               Cow position:chr23:38455444-38455157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:171-448
               
               
               Cow position:chr23:20057125-20056842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:172-314
               
               
               Cow position:chr23:35366355-35366212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 88

               
               
               Conread position:172-314
               
               
               Cow position:chr23:35369267-35369124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 88

               
               
               Conread position:172-445
               
               
               Cow position:chr23:587138-587411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 153

               
               
               Conread position:172-447
               
               
               Cow position:chr23:4608639-4608361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 131

               
               
               Conread position:173-428
               
               
               Cow position:chr23:10014289-10014543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:173-438
               
               
               Cow position:chr23:7402450-7402715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:176-448
               
               
               Cow position:chr23:1670664-1670924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):154, 83

               
               
               Conread position:176-448
               
               
               Cow position:chr23:9595082-9594811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:176-448
               
               
               Cow position:chr23:19979201-19978932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 150

               
               
               Conread position:176-448
               
               
               Cow position:chr23:26632547-26632826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 147

               
               
               Conread position:176-448
               
               
               Cow position:chr23:27563962-27563679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):25, 110

               
               
               Conread position:176-448
               
               
               Cow position:chr23:38503379-38503084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 137

               
               
               Conread position:177-438
               
               
               Cow position:chr23:38854986-38854723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:181-448
               
               
               Cow position:chr23:18402534-18402268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:184-448
               
               
               Cow position:chr23:16700284-16700020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 70

               
               
               Conread position:185-448
               
               
               Cow position:chr23:13599098-13599364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 83

               
               
               Conread position:187-446
               
               
               Cow position:chr23:2417213-2417470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:187-448
               
               
               Cow position:chr23:1885418-1885151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 138

               
               
               Conread position:188-446
               
               
               Cow position:chr23:24704033-24704304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 142

               
               
               Conread position:192-445
               
               
               Cow position:chr23:1503221-1503462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:192-448
               
               
               Cow position:chr23:27544595-27544849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:193-431
               
               
               Cow position:chr23:14189794-14189556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:194-448
               
               
               Cow position:chr23:25378421-25378671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):79, 41

               
               
               Conread position:195-415
               
               
               Cow position:chr23:25189106-25189336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:195-444
               
               
               Cow position:chr23:35254471-35254227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):58, 72

               
               
               Conread position:195-446
               
               
               Cow position:chr23:6223767-6223997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:195-447
               
               
               Cow position:chr23:5603504-5603264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr23:15742866-15743113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:204-448
               
               
               Cow position:chr23:5723319-5723567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:210-447
               
               
               Cow position:chr23:1068531-1068295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:218-448
               
               
               Cow position:chr23:1742147-1742379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:219-444
               
               
               Cow position:chr23:39028575-39028798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:223-445
               
               
               Cow position:chr23:4942308-4942092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:225-431
               
               
               Cow position:chr23:5191301-5191092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:230-448
               
               
               Cow position:chr23:30999377-30999593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 100

               
               
               Conread position:234-447
               
               
               Cow position:chr23:19371265-19371054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:238-448
               
               
               Cow position:chr23:34356443-34356664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 167

               
               
               Conread position:266-448
               
               
               Cow position:chr23:1921390-1921205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:270-446
               
               
               Cow position:chr23:23113870-23114052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 169

               
               
               Conread position:275-446
               
               
               Cow position:chr23:4966666-4966841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:275-448
               
               
               Cow position:chr23:1767676-1767850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:277-448
               
               
               Cow position:chr23:5436794-5436621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:279-447
               
               
               Cow position:chr23:35942065-35942234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:291-448
               
               
               Cow position:chr23:33622290-33622128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 150

               
               
               Conread position:293-448
               
               
               Cow position:chr23:30950824-30950976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:297-441
               
               
               Cow position:chr23:5745046-5745190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:301-448
               
               
               Cow position:chr23:9713189-9713344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 140

               
               
               Conread position:312-444
               
               
               Cow position:chr23:1655777-1655912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:312-448
               
               
               Cow position:chr23:3245033-3244892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:1-447
               
               
               Cow position:chr24:30545302-30544868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:1-448
               
               
               Cow position:chr24:8886465-8886905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 148

               
               
               Conread position:1-448
               
               
               Cow position:chr24:43432362-43432785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:3-445
               
               
               Cow position:chr24:18331270-18331710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:4-445
               
               
               Cow position:chr24:40184159-40184616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 230

               
               
               Conread position:7-448
               
               
               Cow position:chr24:33943984-33944396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 38

               
               
               Conread position:8-447
               
               
               Cow position:chr24:8814424-8814009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 17

               
               
               Conread position:8-447
               
               
               Cow position:chr24:18970919-18970515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 31

               
               
               Conread position:12-448
               
               
               Cow position:chr24:40129701-40130124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 114

               
               
               Conread position:44-442
               
               
               Cow position:chr24:24137239-24136872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 61

               
               
               Conread position:56-448
               
               
               Cow position:chr24:6102442-6102825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):140, 66

               
               
               Conread position:58-448
               
               
               Cow position:chr24:31159235-31159614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 92

               
               
               Conread position:69-445
               
               
               Cow position:chr24:18695238-18695611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):150, 70

               
               
               Conread position:88-402
               
               
               Cow position:chr24:6450147-6450446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:88-442
               
               
               Cow position:chr24:17955820-17955455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:112-445
               
               
               Cow position:chr24:3631173-3631495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:133-396
               
               
               Cow position:chr24:11118957-11119228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):24, 203

               
               
               Conread position:133-448
               
               
               Cow position:chr24:29170644-29170958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:134-390
               
               
               Cow position:chr24:6677181-6677449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:138-448
               
               
               Cow position:chr24:35795055-35794740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:144-448
               
               
               Cow position:chr24:28553853-28553559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 8

               
               
               Conread position:148-446
               
               
               Cow position:chr24:28721580-28721882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:149-448
               
               
               Cow position:chr24:29679620-29679315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 210

               
               
               Conread position:150-446
               
               
               Cow position:chr24:24755149-24755440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:150-448
               
               
               Cow position:chr24:34396464-34396184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:158-445
               
               
               Cow position:chr24:15861897-15861606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:161-416
               
               
               Cow position:chr24:40056012-40055766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:161-445
               
               
               Cow position:chr24:27267343-27267619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:161-446
               
               
               Cow position:chr24:11839886-11840180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:161-448
               
               
               Cow position:chr24:27290585-27290866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:162-384
               
               
               Cow position:chr24:11006923-11007151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:163-448
               
               
               Cow position:chr24:18485292-18484999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 129

               
               
               Conread position:163-448
               
               
               Cow position:chr24:27052784-27052499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 30

               
               
               Conread position:163-448
               
               
               Cow position:chr24:29388958-29389226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:165-382
               
               
               Cow position:chr24:38374995-38375214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 41

               
               
               Conread position:165-402
               
               
               Cow position:chr24:27809891-27810136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:165-446
               
               
               Cow position:chr24:36486349-36486072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:165-448
               
               
               Cow position:chr24:18405594-18405316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:165-448
               
               
               Cow position:chr24:18741861-18741577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:165-448
               
               
               Cow position:chr24:29596101-29595814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:165-448
               
               
               Cow position:chr24:32205086-32204800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:165-448
               
               
               Cow position:chr24:32370201-32369922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:166-302
               
               
               Cow position:chr24:27763513-27763649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-381
               
               
               Cow position:chr24:18734649-18734423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:166-390
               
               
               Cow position:chr24:20970081-20969862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:166-406
               
               
               Cow position:chr24:814554-814318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:166-407
               
               
               Cow position:chr24:44041299-44041057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:166-439
               
               
               Cow position:chr24:35572198-35572472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:166-445
               
               
               Cow position:chr24:6160373-6160097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:166-445
               
               
               Cow position:chr24:27720041-27719768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):115, 73

               
               
               Conread position:166-446
               
               
               Cow position:chr24:3493604-3493877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:166-448
               
               
               Cow position:chr24:19535533-19535261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:166-448
               
               
               Cow position:chr24:32054382-32054656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 96

               
               
               Conread position:166-448
               
               
               Cow position:chr24:36555117-36554838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):111, 50

               
               
               Conread position:166-448
               
               
               Cow position:chr24:42007457-42007735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 94

               
               
               Conread position:167-448
               
               
               Cow position:chr24:43635147-43635433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):114, 101

               
               
               Conread position:168-442
               
               
               Cow position:chr24:27906141-27906426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:169-448
               
               
               Cow position:chr24:30229180-30229468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:170-447
               
               
               Cow position:chr24:40849878-40850156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:170-448
               
               
               Cow position:chr24:30484228-30483953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 90

               
               
               Conread position:171-444
               
               
               Cow position:chr24:17567106-17567376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:172-445
               
               
               Cow position:chr24:35073809-35074085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:173-447
               
               
               Cow position:chr24:35986001-35985736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:176-427
               
               
               Cow position:chr24:12851454-12851688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:176-444
               
               
               Cow position:chr24:27874323-27874586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:176-448
               
               
               Cow position:chr24:43364084-43364356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:179-390
               
               
               Cow position:chr24:18324339-18324559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:179-446
               
               
               Cow position:chr24:19769222-19769482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:181-448
               
               
               Cow position:chr24:17363919-17363653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:181-448
               
               
               Cow position:chr24:18390562-18390297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 25

               
               
               Conread position:185-448
               
               
               Cow position:chr24:16994624-16994876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):116, 75

               
               
               Conread position:187-430
               
               
               Cow position:chr24:5151967-5152214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:195-448
               
               
               Cow position:chr24:27039779-27040043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):67, 234

               
               
               Conread position:201-431
               
               
               Cow position:chr24:27207448-27207216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):100, 65

               
               
               Conread position:201-448
               
               
               Cow position:chr24:26732194-26732446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):65, 46

               
               
               Conread position:215-448
               
               
               Cow position:chr24:33222179-33221945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:228-448
               
               
               Cow position:chr24:24457473-24457255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):73, 95

               
               
               Conread position:233-433
               
               
               Cow position:chr24:16509751-16509951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:236-448
               
               
               Cow position:chr24:33465819-33465623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:239-448
               
               
               Cow position:chr24:15373194-15373400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:241-448
               
               
               Cow position:chr24:5911-5703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:242-448
               
               
               Cow position:chr24:34008793-34008578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 199

               
               
               Conread position:247-448
               
               
               Cow position:chr24:16089025-16089223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:251-446
               
               
               Cow position:chr24:14171900-14171696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 72

               
               
               Conread position:251-448
               
               
               Cow position:chr24:34782990-34782793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:263-431
               
               
               Cow position:chr24:40983969-40984142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:264-448
               
               
               Cow position:chr24:16895625-16895442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:270-448
               
               
               Cow position:chr24:17832997-17832820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:275-439
               
               
               Cow position:chr24:30226760-30226928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 127

               
               
               Conread position:287-443
               
               
               Cow position:chr24:35576703-35576545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:295-446
               
               
               Cow position:chr24:27552735-27552887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):6, 29

               
               
               Conread position:302-444
               
               
               Cow position:chr24:17127372-17127515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:326-447
               
               
               Cow position:chr24:27418227-27418104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:329-448
               
               
               Cow position:chr24:39523573-39523454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:330-448
               
               
               Cow position:chr24:6957382-6957496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:351-448
               
               
               Cow position:chr24:16895232-16895136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1-447
               
               
               Cow position:chr25:28188385-28187929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:4-448
               
               
               Cow position:chr25:20007725-20008149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 7

               
               
               Conread position:5-355
               
               
               Cow position:chr25:14266924-14266580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:7-448
               
               
               Cow position:chr25:12081747-12081303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 231

               
               
               Conread position:7-448
               
               
               Cow position:chr25:35612727-35612296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 279

               
               
               Conread position:8-445
               
               
               Cow position:chr25:12824422-12824003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 123

               
               
               Conread position:9-448
               
               
               Cow position:chr25:11585121-11585535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 72

               
               
               Conread position:40-445
               
               
               Cow position:chr25:4002413-4002816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 55

               
               
               Conread position:81-440
               
               
               Cow position:chr25:35344686-35345040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:112-448
               
               
               Cow position:chr25:20069402-20069738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:116-445
               
               
               Cow position:chr25:35625491-35625170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 6

               
               
               Conread position:136-448
               
               
               Cow position:chr25:9957327-9957021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:140-448
               
               
               Cow position:chr25:33978492-33978200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:144-448
               
               
               Cow position:chr25:21895172-21894867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:151-448
               
               
               Cow position:chr25:40321576-40321270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):26, 176

               
               
               Conread position:153-448
               
               
               Cow position:chr25:21266726-21267008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 112

               
               
               Conread position:158-439
               
               
               Cow position:chr25:13642590-13642302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:159-448
               
               
               Cow position:chr25:14196581-14196880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:161-402
               
               
               Cow position:chr25:10366022-10365781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:161-431
               
               
               Cow position:chr25:14225065-14224802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 13

               
               
               Conread position:161-448
               
               
               Cow position:chr25:25827193-25827488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:162-448
               
               
               Cow position:chr25:9349528-9349264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:164-407
               
               
               Cow position:chr25:6424856-6424610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:165-443
               
               
               Cow position:chr25:27821144-27821422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:165-445
               
               
               Cow position:chr25:13569435-13569158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr25:7641721-7641434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:165-448
               
               
               Cow position:chr25:20785849-20785569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:165-448
               
               
               Cow position:chr25:26654639-26654929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:166-395
               
               
               Cow position:chr25:9634653-9634870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:166-406
               
               
               Cow position:chr25:12204203-12204445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:166-437
               
               
               Cow position:chr25:3145579-3145852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:166-437
               
               
               Cow position:chr25:22203957-22203678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:166-443
               
               
               Cow position:chr25:21245873-21245592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:166-444
               
               
               Cow position:chr25:36779229-36779514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):100, 60

               
               
               Conread position:166-445
               
               
               Cow position:chr25:788002-788278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:166-445
               
               
               Cow position:chr25:5514740-5515028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):96, 158

               
               
               Conread position:166-446
               
               
               Cow position:chr25:38981846-38982113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):136, 38

               
               
               Conread position:166-448
               
               
               Cow position:chr25:4522084-4521820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):164, 34

               
               
               Conread position:166-448
               
               
               Cow position:chr25:9023378-9023650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:166-448
               
               
               Cow position:chr25:14791486-14791774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:166-448
               
               
               Cow position:chr25:16922059-16921780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:166-448
               
               
               Cow position:chr25:17658348-17658628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 69

               
               
               Conread position:167-448
               
               
               Cow position:chr25:10407684-10407400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:167-448
               
               
               Cow position:chr25:16064631-16064909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 93

               
               
               Conread position:168-443
               
               
               Cow position:chr25:26058320-26058597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 156

               
               
               Conread position:168-443
               
               
               Cow position:chr25:36761841-36762117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:168-448
               
               
               Cow position:chr25:9396190-9396462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:172-445
               
               
               Cow position:chr25:9961439-9961159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 154

               
               
               Conread position:172-448
               
               
               Cow position:chr25:1837979-1838254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 45

               
               
               Conread position:172-448
               
               
               Cow position:chr25:26700779-26701047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:172-448
               
               
               Cow position:chr25:36535693-36535416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:176-438
               
               
               Cow position:chr25:8918535-8918269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):26, 151

               
               
               Conread position:176-442
               
               
               Cow position:chr25:16001778-16001514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:176-445
               
               
               Cow position:chr25:7581684-7581417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 147

               
               
               Conread position:178-439
               
               
               Cow position:chr25:36081619-36081885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 82

               
               
               Conread position:179-420
               
               
               Cow position:chr25:36026753-36026998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:179-448
               
               
               Cow position:chr25:2194693-2194949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):83, 22

               
               
               Conread position:180-393
               
               
               Cow position:chr25:16400503-16400300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:180-396
               
               
               Cow position:chr25:395102-395318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:180-442
               
               
               Cow position:chr25:27531520-27531268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:189-417
               
               
               Cow position:chr25:20394959-20395179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:191-416
               
               
               Cow position:chr25:22369151-22369377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:192-448
               
               
               Cow position:chr25:12840958-12840701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):138, 68

               
               
               Conread position:193-401
               
               
               Cow position:chr25:26112035-26112240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 70

               
               
               Conread position:195-446
               
               
               Cow position:chr25:38425128-38425376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):155, 73

               
               
               Conread position:195-448
               
               
               Cow position:chr25:15377096-15377344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):109, 65

               
               
               Conread position:198-393
               
               
               Cow position:chr25:6256172-6255974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:216-446
               
               
               Cow position:chr25:26090028-26089798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:221-445
               
               
               Cow position:chr25:13736522-13736299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:228-448
               
               
               Cow position:chr25:17704545-17704761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:231-448
               
               
               Cow position:chr25:27801089-27801299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:236-448
               
               
               Cow position:chr25:21042191-21042403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:237-446
               
               
               Cow position:chr25:12755686-12755472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:239-393
               
               
               Cow position:chr25:35110323-35110163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:239-442
               
               
               Cow position:chr25:3982851-3983051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:243-448
               
               
               Cow position:chr25:18905692-18905902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:249-445
               
               
               Cow position:chr25:23323019-23323214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:250-442
               
               
               Cow position:chr25:36138820-36138638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:271-448
               
               
               Cow position:chr25:21893178-21893355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:286-445
               
               
               Cow position:chr25:32588026-32587864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:287-448
               
               
               Cow position:chr25:22332616-22332782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):14, 116

               
               
               Conread position:290-448
               
               
               Cow position:chr25:22730690-22730846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:291-448
               
               
               Cow position:chr25:24651593-24651436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:291-448
               
               
               Cow position:chr25:30618924-30619081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:313-447
               
               
               Cow position:chr25:24504618-24504483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 121

               
               
               Conread position:1-448
               
               
               Cow position:chr26:614072-613639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:3-448
               
               
               Cow position:chr26:9604162-9604598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:7-394
               
               
               Cow position:chr26:1329151-1329526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 101

               
               
               Conread position:23-448
               
               
               Cow position:chr26:8810736-8811163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 37

               
               
               Conread position:27-448
               
               
               Cow position:chr26:20013076-20013514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:61-431
               
               
               Cow position:chr26:26294529-26294172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 62

               
               
               Conread position:74-448
               
               
               Cow position:chr26:16921598-16921974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 192

               
               
               Conread position:109-442
               
               
               Cow position:chr26:9666713-9666376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:133-448
               
               
               Cow position:chr26:3182229-3181903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:142-445
               
               
               Cow position:chr26:14958285-14957986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:146-448
               
               
               Cow position:chr26:33011927-33011632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):156, 55

               
               
               Conread position:150-448
               
               
               Cow position:chr26:798562-798262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):52, 68

               
               
               Conread position:151-448
               
               
               Cow position:chr26:4854275-4854581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:157-448
               
               
               Cow position:chr26:10768156-10767876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 19

               
               
               Conread position:159-445
               
               
               Cow position:chr26:20846368-20846657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):37, 172

               
               
               Conread position:159-448
               
               
               Cow position:chr26:29332845-29333129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:160-431
               
               
               Cow position:chr26:23097430-23097160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:162-446
               
               
               Cow position:chr26:32553431-32553720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:163-395
               
               
               Cow position:chr26:32026611-32026383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:163-448
               
               
               Cow position:chr26:12155362-12155085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:164-431
               
               
               Cow position:chr26:16796482-16796209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:165-446
               
               
               Cow position:chr26:27077-26801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:165-446
               
               
               Cow position:chr26:32058404-32058686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 165

               
               
               Conread position:165-448
               
               
               Cow position:chr26:2531423-2531146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:165-448
               
               
               Cow position:chr26:8352710-8353005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 160

               
               
               Conread position:165-448
               
               
               Cow position:chr26:11263388-11263677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 159

               
               
               Conread position:166-346
               
               
               Cow position:chr26:26670990-26670814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:166-380
               
               
               Cow position:chr26:22831044-22830825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:166-384
               
               
               Cow position:chr26:13270926-13270701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:166-403
               
               
               Cow position:chr26:18231119-18231358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):130, 94

               
               
               Conread position:166-430
               
               
               Cow position:chr26:31889842-31890111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 239

               
               
               Conread position:166-447
               
               
               Cow position:chr26:11134944-11134652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:166-447
               
               
               Cow position:chr26:21418701-21418417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:166-448
               
               
               Cow position:chr26:4585458-4585174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 157

               
               
               Conread position:166-448
               
               
               Cow position:chr26:16549732-16550020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 159

               
               
               Conread position:167-448
               
               
               Cow position:chr26:32013383-32013669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:167-448
               
               
               Cow position:chr26:32601104-32601386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 156

               
               
               Conread position:167-448
               
               
               Cow position:chr26:32776753-32776470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:171-448
               
               
               Cow position:chr26:33567284-33567008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):159, 30

               
               
               Conread position:172-405
               
               
               Cow position:chr26:19459430-19459677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:172-448
               
               
               Cow position:chr26:8700292-8700011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):29, 266

               
               
               Conread position:174-425
               
               
               Cow position:chr26:21351448-21351704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):88, 79

               
               
               Conread position:175-448
               
               
               Cow position:chr26:34108532-34108795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:176-429
               
               
               Cow position:chr26:23926216-23925967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:177-448
               
               
               Cow position:chr26:31779237-31779518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:184-448
               
               
               Cow position:chr26:21242874-21243138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 101

               
               
               Conread position:187-448
               
               
               Cow position:chr26:21991885-21992138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):14, 73

               
               
               Conread position:191-448
               
               
               Cow position:chr26:15200739-15200477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):110, 69

               
               
               Conread position:195-448
               
               
               Cow position:chr26:8642740-8642984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):135, 54

               
               
               Conread position:201-448
               
               
               Cow position:chr26:10764007-10764248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 124

               
               
               Conread position:217-443
               
               
               Cow position:chr26:20448775-20448993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:223-447
               
               
               Cow position:chr26:32672630-32672402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 214

               
               
               Conread position:227-405
               
               
               Cow position:chr26:6252661-6252845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:227-445
               
               
               Cow position:chr26:6723918-6724138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):74, 41

               
               
               Conread position:232-446
               
               
               Cow position:chr26:27761830-27761622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:235-443
               
               
               Cow position:chr26:34060155-34060364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:236-448
               
               
               Cow position:chr26:22354236-22354449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 49

               
               
               Conread position:243-444
               
               
               Cow position:chr26:22249652-22249445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):19, 198

               
               
               Conread position:271-443
               
               
               Cow position:chr26:8820006-8819827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:275-448
               
               
               Cow position:chr26:31633587-31633764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:287-444
               
               
               Cow position:chr26:7315229-7315075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:291-445
               
               
               Cow position:chr26:33253444-33253283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 149

               
               
               Conread position:291-448
               
               
               Cow position:chr26:14905934-14905772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:313-446
               
               
               Cow position:chr26:4807460-4807592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:11-448
               
               
               Cow position:chr27:18558711-18558294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 51

               
               
               Conread position:62-448
               
               
               Cow position:chr27:12597096-12596707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 154

               
               
               Conread position:81-447
               
               
               Cow position:chr27:26379881-26380234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:131-398
               
               
               Cow position:chr27:22498809-22498544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:133-402
               
               
               Cow position:chr27:13198170-13197903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:140-448
               
               
               Cow position:chr27:19661188-19660869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:146-444
               
               
               Cow position:chr27:13875971-13875669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:146-448
               
               
               Cow position:chr27:6523287-6522981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 146

               
               
               Conread position:148-443
               
               
               Cow position:chr27:25791044-25790746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:149-442
               
               
               Cow position:chr27:18593504-18593212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:158-446
               
               
               Cow position:chr27:2592770-2592482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 101

               
               
               Conread position:160-415
               
               
               Cow position:chr27:23128681-23128423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:160-444
               
               
               Cow position:chr27:23632828-23632537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):6, 58

               
               
               Conread position:160-446
               
               
               Cow position:chr27:8942456-8942745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 138

               
               
               Conread position:162-399
               
               
               Cow position:chr27:23454920-23455169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 34

               
               
               Conread position:162-446
               
               
               Cow position:chr27:26161721-26161439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:165-386
               
               
               Cow position:chr27:26625349-26625130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:165-436
               
               
               Cow position:chr27:9090579-9090850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 137

               
               
               Conread position:165-448
               
               
               Cow position:chr27:6541847-6541569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:165-448
               
               
               Cow position:chr27:28518507-28518233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 95

               
               
               Conread position:166-400
               
               
               Cow position:chr27:7958614-7958857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:166-429
               
               
               Cow position:chr27:6550672-6550414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:166-437
               
               
               Cow position:chr27:28189996-28190267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:166-440
               
               
               Cow position:chr27:26398038-26398313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:166-442
               
               
               Cow position:chr27:1183655-1183941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:166-447
               
               
               Cow position:chr27:1636723-1636997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:166-448
               
               
               Cow position:chr27:536678-536400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:166-448
               
               
               Cow position:chr27:8962048-8962320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:166-448
               
               
               Cow position:chr27:10980085-10979800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:166-448
               
               
               Cow position:chr27:23554102-23554392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:166-448
               
               
               Cow position:chr27:28921675-28921955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:166-448
               
               
               Cow position:chr27:29831467-29831760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):120, 43

               
               
               Conread position:167-346
               
               
               Cow position:chr27:18922670-18922491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:167-446
               
               
               Cow position:chr27:27038624-27038902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):134, 102

               
               
               Conread position:167-446
               
               
               Cow position:chr27:30868520-30868801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:167-447
               
               
               Cow position:chr27:30362463-30362184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:168-448
               
               
               Cow position:chr27:14902430-14902716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 155

               
               
               Conread position:171-448
               
               
               Cow position:chr27:27064224-27064502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):110, 97

               
               
               Conread position:172-431
               
               
               Cow position:chr27:24227578-24227841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 89

               
               
               Conread position:172-439
               
               
               Cow position:chr27:4385850-4386117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:172-439
               
               
               Cow position:chr27:31147458-31147725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:172-445
               
               
               Cow position:chr27:25380206-25379930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:172-447
               
               
               Cow position:chr27:27843777-27844060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 152

               
               
               Conread position:173-348
               
               
               Cow position:chr27:2643722-2643887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:174-448
               
               
               Cow position:chr27:22171511-22171234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:176-413
               
               
               Cow position:chr27:17926426-17926651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):125, 84

               
               
               Conread position:176-435
               
               
               Cow position:chr27:26427917-26428184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:176-447
               
               
               Cow position:chr27:24999523-24999802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):25, 129

               
               
               Conread position:178-376
               
               
               Cow position:chr27:29309235-29309033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 117

               
               
               Conread position:178-446
               
               
               Cow position:chr27:22454570-22454836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:181-416
               
               
               Cow position:chr27:18215262-18215021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:182-448
               
               
               Cow position:chr27:20354785-20354527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:188-448
               
               
               Cow position:chr27:21569644-21569903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:189-446
               
               
               Cow position:chr27:30915200-30914948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:190-406
               
               
               Cow position:chr27:30843881-30844094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:193-448
               
               
               Cow position:chr27:20036935-20037179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 78

               
               
               Conread position:195-448
               
               
               Cow position:chr27:16705438-16705188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:196-401
               
               
               Cow position:chr27:18434281-18434487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:196-448
               
               
               Cow position:chr27:30988989-30988734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 98

               
               
               Conread position:198-445
               
               
               Cow position:chr27:31499256-31499010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):103, 62

               
               
               Conread position:207-447
               
               
               Cow position:chr27:4067-3835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:216-444
               
               
               Cow position:chr27:9169474-9169705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:218-445
               
               
               Cow position:chr27:22268673-22268441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:219-448
               
               
               Cow position:chr27:15643343-15643110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:227-431
               
               
               Cow position:chr27:7346820-7346619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:228-442
               
               
               Cow position:chr27:30871901-30872116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):73, 40

               
               
               Conread position:239-448
               
               
               Cow position:chr27:3306921-3306711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:255-448
               
               
               Cow position:chr27:24371366-24371177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:255-448
               
               
               Cow position:chr27:29380990-29380790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:262-448
               
               
               Cow position:chr27:4858521-4858702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:262-448
               
               
               Cow position:chr27:26226165-26226353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 153

               
               
               Conread position:265-448
               
               
               Cow position:chr27:7537948-7538140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 179

               
               
               Conread position:279-448
               
               
               Cow position:chr27:20901670-20901508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:284-446
               
               
               Cow position:chr27:20497317-20497147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 157

               
               
               Conread position:287-446
               
               
               Cow position:chr27:10395158-10395320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:287-448
               
               
               Cow position:chr27:715603-715438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:287-448
               
               
               Cow position:chr27:20570222-20570056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):15, 150

               
               
               Conread position:291-447
               
               
               Cow position:chr27:22559725-22559889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:292-448
               
               
               Cow position:chr27:8263239-8263400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 146

               
               
               Conread position:314-445
               
               
               Cow position:chr27:15215307-15215170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:319-448
               
               
               Cow position:chr27:20085633-20085502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 110

               
               
               Conread position:330-446
               
               
               Cow position:chr27:21976106-21975992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:1-448
               
               
               Cow position:chr28:23793712-23793287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 158

               
               
               Conread position:8-396
               
               
               Cow position:chr28:24997019-24996616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:8-448
               
               
               Cow position:chr28:20408997-20409416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 110

               
               
               Conread position:25-438
               
               
               Cow position:chr28:26718964-26719357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:74-448
               
               
               Cow position:chr28:25249005-25249378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:99-446
               
               
               Cow position:chr28:4841726-4841371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:125-448
               
               
               Cow position:chr28:8408437-8408758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:130-448
               
               
               Cow position:chr28:26922661-26922344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 160

               
               
               Conread position:132-448
               
               
               Cow position:chr28:7268232-7267919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:142-448
               
               
               Cow position:chr28:23675859-23676162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:144-430
               
               
               Cow position:chr28:7590461-7590174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:144-443
               
               
               Cow position:chr28:25399609-25399891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:146-446
               
               
               Cow position:chr28:19026282-19025983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 108

               
               
               Conread position:150-445
               
               
               Cow position:chr28:5773366-5773657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:155-448
               
               
               Cow position:chr28:25806321-25806597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):147, 19

               
               
               Conread position:157-448
               
               
               Cow position:chr28:16204598-16204310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:157-448
               
               
               Cow position:chr28:16253121-16252832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:158-448
               
               
               Cow position:chr28:6861689-6861978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:161-446
               
               
               Cow position:chr28:23410589-23410303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 101

               
               
               Conread position:161-448
               
               
               Cow position:chr28:4308160-4307873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:162-438
               
               
               Cow position:chr28:22170981-22170695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 116

               
               
               Conread position:162-446
               
               
               Cow position:chr28:26103452-26103728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:163-448
               
               
               Cow position:chr28:616141-616410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 65

               
               
               Conread position:163-448
               
               
               Cow position:chr28:26684855-26685141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:164-448
               
               
               Cow position:chr28:11786969-11786694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 96

               
               
               Conread position:165-436
               
               
               Cow position:chr28:6577395-6577654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:165-448
               
               
               Cow position:chr28:5826688-5826974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr28:15007901-15008186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 98

               
               
               Conread position:165-448
               
               
               Cow position:chr28:23007988-23007706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:166-315
               
               
               Cow position:chr28:16211356-16211201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:166-427
               
               
               Cow position:chr28:5771107-5771368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:166-429
               
               
               Cow position:chr28:9390624-9390357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 156

               
               
               Conread position:166-431
               
               
               Cow position:chr28:23839950-23840212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):135, 94

               
               
               Conread position:166-441
               
               
               Cow position:chr28:30303452-30303183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:166-445
               
               
               Cow position:chr28:4022123-4022409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:166-445
               
               
               Cow position:chr28:4880523-4880243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):32, 100

               
               
               Conread position:166-445
               
               
               Cow position:chr28:23480521-23480237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:166-447
               
               
               Cow position:chr28:4282751-4282467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:166-447
               
               
               Cow position:chr28:7549321-7549035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):100, 148

               
               
               Conread position:166-447
               
               
               Cow position:chr28:17316601-17316888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 10

               
               
               Conread position:166-448
               
               
               Cow position:chr28:5553185-5552914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:166-448
               
               
               Cow position:chr28:5792443-5792732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:166-448
               
               
               Cow position:chr28:12946685-12946973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:166-448
               
               
               Cow position:chr28:17287965-17288240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:166-448
               
               
               Cow position:chr28:20313016-20313301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:166-448
               
               
               Cow position:chr28:21380622-21380905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):115, 26

               
               
               Conread position:167-448
               
               
               Cow position:chr28:21502137-21502416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 117

               
               
               Conread position:168-395
               
               
               Cow position:chr28:25701115-25700901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:170-448
               
               
               Cow position:chr28:16085070-16085349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:170-448
               
               
               Cow position:chr28:33051765-33052060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 158

               
               
               Conread position:171-448
               
               
               Cow position:chr28:4057732-4058006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):25, 70

               
               
               Conread position:171-448
               
               
               Cow position:chr28:34878227-34877943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):30, 269

               
               
               Conread position:172-396
               
               
               Cow position:chr28:16215144-16214931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):158, 28

               
               
               Conread position:172-448
               
               
               Cow position:chr28:1837743-1838017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:172-448
               
               
               Cow position:chr28:6059726-6059446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):25, 184

               
               
               Conread position:172-448
               
               
               Cow position:chr28:25727128-25727400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:173-447
               
               
               Cow position:chr28:7228635-7228362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:173-447
               
               
               Cow position:chr28:28766162-28765880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 268

               
               
               Conread position:176-446
               
               
               Cow position:chr28:15263974-15263692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):21, 272

               
               
               Conread position:176-448
               
               
               Cow position:chr28:21354975-21355255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:181-442
               
               
               Cow position:chr28:24343125-24343389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:187-448
               
               
               Cow position:chr28:18354556-18354304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):114, 70

               
               
               Conread position:188-443
               
               
               Cow position:chr28:9285615-9285351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):13, 136

               
               
               Conread position:189-446
               
               
               Cow position:chr28:10606854-10606605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):141, 11

               
               
               Conread position:195-442
               
               
               Cow position:chr28:19394401-19394637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):135, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr28:5144752-5144497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:195-448
               
               
               Cow position:chr28:9099705-9099960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:201-446
               
               
               Cow position:chr28:11818184-11817945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 93

               
               
               Conread position:205-441
               
               
               Cow position:chr28:10478562-10478326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:219-443
               
               
               Cow position:chr28:22739595-22739811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:230-447
               
               
               Cow position:chr28:4881440-4881217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:233-443
               
               
               Cow position:chr28:26982938-26982719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 176

               
               
               Conread position:234-448
               
               
               Cow position:chr28:18186354-18186580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:237-445
               
               
               Cow position:chr28:118243-118029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:238-415
               
               
               Cow position:chr28:3105052-3105242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:239-445
               
               
               Cow position:chr28:19023947-19024166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 206

               
               
               Conread position:239-448
               
               
               Cow position:chr28:11866855-11866641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:239-448
               
               
               Cow position:chr28:18760228-18760024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:241-448
               
               
               Cow position:chr28:2752684-2752470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:247-448
               
               
               Cow position:chr28:28903847-28903639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:275-429
               
               
               Cow position:chr28:1632805-1632646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:275-448
               
               
               Cow position:chr28:25728049-25728223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:287-446
               
               
               Cow position:chr28:27161468-27161304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:293-448
               
               
               Cow position:chr28:1538036-1538190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 106

               
               
               Conread position:295-431
               
               
               Cow position:chr28:5838407-5838547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):6, 108

               
               
               Conread position:299-446
               
               
               Cow position:chr28:32174506-32174649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:312-448
               
               
               Cow position:chr28:19564342-19564204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:328-445
               
               
               Cow position:chr28:20968957-20968839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:1-138
               
               
               Cow position:chr29:24952287-24952424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:1-138
               
               
               Cow position:chr29:26415615-26415752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-445
               
               
               Cow position:chr29:109281-109709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:1-447
               
               
               Cow position:chr29:10652940-10653358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:3-447
               
               
               Cow position:chr29:9911765-9912192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 128

               
               
               Conread position:3-447
               
               
               Cow position:chr29:32963144-32963565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:3-448
               
               
               Cow position:chr29:94966-94540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:7-395
               
               
               Cow position:chr29:19338567-19338952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 116

               
               
               Conread position:7-447
               
               
               Cow position:chr29:16195435-16195858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 84

               
               
               Conread position:8-446
               
               
               Cow position:chr29:1021880-1022311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 42

               
               
               Conread position:11-448
               
               
               Cow position:chr29:2984468-2984908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:25-448
               
               
               Cow position:chr29:41530431-41530867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 272

               
               
               Conread position:42-446
               
               
               Cow position:chr29:12784360-12783945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 234

               
               
               Conread position:44-403
               
               
               Cow position:chr29:4065677-4066058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 169

               
               
               Conread position:46-448
               
               
               Cow position:chr29:22175319-22175698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 76

               
               
               Conread position:132-447
               
               
               Cow position:chr29:356024-356337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:140-440
               
               
               Cow position:chr29:11696240-11696539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:146-448
               
               
               Cow position:chr29:19428379-19428676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 56

               
               
               Conread position:148-425
               
               
               Cow position:chr29:2644588-2644304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 9

               
               
               Conread position:148-437
               
               
               Cow position:chr29:37292494-37292786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:149-431
               
               
               Cow position:chr29:40891985-40891695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:150-420
               
               
               Cow position:chr29:9686284-9686009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 133

               
               
               Conread position:151-448
               
               
               Cow position:chr29:25333735-25333442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:153-448
               
               
               Cow position:chr29:8669076-8669383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:155-448
               
               
               Cow position:chr29:6217825-6217537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:160-446
               
               
               Cow position:chr29:20178398-20178119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):8, 52

               
               
               Conread position:161-448
               
               
               Cow position:chr29:4120577-4120871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:162-447
               
               
               Cow position:chr29:31926560-31926273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:163-416
               
               
               Cow position:chr29:3502792-3503042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):167, 39

               
               
               Conread position:163-431
               
               
               Cow position:chr29:16657422-16657695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:163-448
               
               
               Cow position:chr29:24952417-24952705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:164-435
               
               
               Cow position:chr29:12798662-12798926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:164-440
               
               
               Cow position:chr29:7666299-7666020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:165-398
               
               
               Cow position:chr29:8164130-8163890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 142

               
               
               Conread position:165-446
               
               
               Cow position:chr29:32290335-32290624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:165-448
               
               
               Cow position:chr29:2071835-2071555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 119

               
               
               Conread position:165-448
               
               
               Cow position:chr29:35291832-35292109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr29:39567421-39567703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:166-394
               
               
               Cow position:chr29:19907090-19907319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:166-395
               
               
               Cow position:chr29:29477298-29477069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:166-402
               
               
               Cow position:chr29:18878767-18878526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:166-421
               
               
               Cow position:chr29:2415077-2414820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:166-428
               
               
               Cow position:chr29:35281237-35281496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:166-438
               
               
               Cow position:chr29:28195785-28195508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:166-439
               
               
               Cow position:chr29:479120-479394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:166-441
               
               
               Cow position:chr29:42406397-42406685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:166-446
               
               
               Cow position:chr29:11684746-11685022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr29:22069013-22068723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:166-448
               
               
               Cow position:chr29:26017777-26017485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:167-448
               
               
               Cow position:chr29:29056918-29057196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:172-431
               
               
               Cow position:chr29:32799963-32799704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:172-448
               
               
               Cow position:chr29:12005024-12004745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:172-448
               
               
               Cow position:chr29:18212242-18211977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):158, 114

               
               
               Conread position:172-448
               
               
               Cow position:chr29:26318934-26319186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:173-442
               
               
               Cow position:chr29:29769605-29769340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:173-448
               
               
               Cow position:chr29:35738529-35738255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 180

               
               
               Conread position:176-399
               
               
               Cow position:chr29:4194377-4194148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:176-447
               
               
               Cow position:chr29:26334645-26334371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 30

               
               
               Conread position:176-448
               
               
               Cow position:chr29:22936025-22936289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):154, 18

               
               
               Conread position:178-442
               
               
               Cow position:chr29:26329964-26330217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:178-443
               
               
               Cow position:chr29:4647240-4646983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):150, 71

               
               
               Conread position:178-445
               
               
               Cow position:chr29:6293721-6293464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):124, 65

               
               
               Conread position:182-444
               
               
               Cow position:chr29:27858542-27858808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 76

               
               
               Conread position:182-448
               
               
               Cow position:chr29:11915567-11915844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:183-447
               
               
               Cow position:chr29:707194-706933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:185-448
               
               
               Cow position:chr29:36183029-36183298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 58

               
               
               Conread position:185-448
               
               
               Cow position:chr29:44378665-44378397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):81, 106

               
               
               Conread position:186-438
               
               
               Cow position:chr29:10235361-10235123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:189-448
               
               
               Cow position:chr29:17409086-17409352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:190-448
               
               
               Cow position:chr29:25474665-25474940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 263

               
               
               Conread position:195-448
               
               
               Cow position:chr29:4520099-4520357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr29:17668259-17668508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 130

               
               
               Conread position:196-448
               
               
               Cow position:chr29:6286393-6286144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):86, 64

               
               
               Conread position:199-431
               
               
               Cow position:chr29:43495827-43496049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):104, 61

               
               
               Conread position:201-447
               
               
               Cow position:chr29:39642946-39643192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):100, 69

               
               
               Conread position:203-445
               
               
               Cow position:chr29:19821068-19821298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:204-446
               
               
               Cow position:chr29:22778410-22778160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):12, 120

               
               
               Conread position:216-447
               
               
               Cow position:chr29:463869-463638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:219-448
               
               
               Cow position:chr29:6337450-6337680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:219-448
               
               
               Cow position:chr29:38580763-38580997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:224-448
               
               
               Cow position:chr29:41364902-41365128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:234-441
               
               
               Cow position:chr29:5652523-5652715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:234-448
               
               
               Cow position:chr29:11054051-11053842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:239-446
               
               
               Cow position:chr29:30188533-30188322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:241-448
               
               
               Cow position:chr29:44988972-44988773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:242-448
               
               
               Cow position:chr29:11646914-11647111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:243-448
               
               
               Cow position:chr29:4334539-4334743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:249-448
               
               
               Cow position:chr29:17301342-17301551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:259-448
               
               
               Cow position:chr29:4494949-4495138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:262-442
               
               
               Cow position:chr29:456966-456777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:266-448
               
               
               Cow position:chr29:12025637-12025450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:273-445
               
               
               Cow position:chr29:19186590-19186754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:275-428
               
               
               Cow position:chr29:25432246-25432397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:275-448
               
               
               Cow position:chr29:4085162-4085330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:286-448
               
               
               Cow position:chr29:44008928-44008763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:291-448
               
               
               Cow position:chr29:2055916-2056078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:314-446
               
               
               Cow position:chr29:11489841-11489706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:1-155
               
               
               Cow position:chr3:64011235-64011086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:1-395
               
               
               Cow position:chr3:56704996-56704601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:1-448
               
               
               Cow position:chr3:82460750-82461174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:3-419
               
               
               Cow position:chr3:82359608-82360010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 131

               
               
               Conread position:3-446
               
               
               Cow position:chr3:17895394-17895837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 250

               
               
               Conread position:3-448
               
               
               Cow position:chr3:59333311-59333765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 227

               
               
               Conread position:4-431
               
               
               Cow position:chr3:39171923-39171501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:4-446
               
               
               Cow position:chr3:14602159-14601718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 13

               
               
               Conread position:4-447
               
               
               Cow position:chr3:64172005-64172434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:5-445
               
               
               Cow position:chr3:58540957-58540537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:7-445
               
               
               Cow position:chr3:3984867-3985319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:7-448
               
               
               Cow position:chr3:44623327-44622891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 93

               
               
               Conread position:8-448
               
               
               Cow position:chr3:29360577-29360151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 141

               
               
               Conread position:11-431
               
               
               Cow position:chr3:25691319-25691730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 124

               
               
               Conread position:11-445
               
               
               Cow position:chr3:38691857-38691414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 53

               
               
               Conread position:11-448
               
               
               Cow position:chr3:64281370-64280936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 61

               
               
               Conread position:18-365
               
               
               Cow position:chr3:34392526-34392184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 136

               
               
               Conread position:25-416
               
               
               Cow position:chr3:76138043-76138443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 253

               
               
               Conread position:25-441
               
               
               Cow position:chr3:21081816-21081388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:26-448
               
               
               Cow position:chr3:23471905-23471464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 309

               
               
               Conread position:38-448
               
               
               Cow position:chr3:5096799-5097202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 93

               
               
               Conread position:43-448
               
               
               Cow position:chr3:57760106-57760493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):219, 21

               
               
               Conread position:59-448
               
               
               Cow position:chr3:73759904-73759521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 91

               
               
               Conread position:62-446
               
               
               Cow position:chr3:57763847-57764215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 85

               
               
               Conread position:62-448
               
               
               Cow position:chr3:20438021-20437661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):239, 71

               
               
               Conread position:64-436
               
               
               Cow position:chr3:78946214-78945847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 59

               
               
               Conread position:87-444
               
               
               Cow position:chr3:71430574-71430213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:108-448
               
               
               Cow position:chr3:79292484-79292824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:130-415
               
               
               Cow position:chr3:53674561-53674274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):72, 42

               
               
               Conread position:130-448
               
               
               Cow position:chr3:63179544-63179852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):71, 131

               
               
               Conread position:132-403
               
               
               Cow position:chr3:14466032-14465763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:132-448
               
               
               Cow position:chr3:42177842-42178152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 20

               
               
               Conread position:136-448
               
               
               Cow position:chr3:48362769-48363073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:138-448
               
               
               Cow position:chr3:56476368-56476677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:144-425
               
               
               Cow position:chr3:67704230-67704519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:146-447
               
               
               Cow position:chr3:38346893-38347187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:146-448
               
               
               Cow position:chr3:78894622-78894330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 114

               
               
               Conread position:148-438
               
               
               Cow position:chr3:29812938-29813230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 120

               
               
               Conread position:148-446
               
               
               Cow position:chr3:30179776-30180079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:149-448
               
               
               Cow position:chr3:80053841-80053546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:150-448
               
               
               Cow position:chr3:53739495-53739190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:151-400
               
               
               Cow position:chr3:13577482-13577241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:156-439
               
               
               Cow position:chr3:15387913-15388201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:157-448
               
               
               Cow position:chr3:2393263-2392967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:157-448
               
               
               Cow position:chr3:9843287-9843582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):105, 166

               
               
               Conread position:157-448
               
               
               Cow position:chr3:27544626-27544338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:157-448
               
               
               Cow position:chr3:28908494-28908208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):18, 106

               
               
               Conread position:160-442
               
               
               Cow position:chr3:81939957-81940247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):42, 165

               
               
               Conread position:160-445
               
               
               Cow position:chr3:81401595-81401320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:160-448
               
               
               Cow position:chr3:54434680-54434971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 164

               
               
               Conread position:160-448
               
               
               Cow position:chr3:68146115-68145848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):141, 41

               
               
               Conread position:161-448
               
               
               Cow position:chr3:55124571-55124285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:162-448
               
               
               Cow position:chr3:18066842-18067136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:163-427
               
               
               Cow position:chr3:23735393-23735125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):111, 160

               
               
               Conread position:163-431
               
               
               Cow position:chr3:17952365-17952637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:163-438
               
               
               Cow position:chr3:65058411-65058687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 72

               
               
               Conread position:163-439
               
               
               Cow position:chr3:24852878-24852597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 162

               
               
               Conread position:163-445
               
               
               Cow position:chr3:82657376-82657095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:163-448
               
               
               Cow position:chr3:12712214-12711920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:163-448
               
               
               Cow position:chr3:71497437-71497143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 129

               
               
               Conread position:164-396
               
               
               Cow position:chr3:7678383-7678612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):137, 39

               
               
               Conread position:164-448
               
               
               Cow position:chr3:26903825-26904105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:165-325
               
               
               Cow position:chr3:32363862-32363697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:165-373
               
               
               Cow position:chr3:53903897-53904100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:165-394
               
               
               Cow position:chr3:22872341-22872105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:165-395
               
               
               Cow position:chr3:83920909-83921140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:165-443
               
               
               Cow position:chr3:1830852-1830583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:165-444
               
               
               Cow position:chr3:71231117-71231387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:165-445
               
               
               Cow position:chr3:29807173-29807459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:165-445
               
               
               Cow position:chr3:41367272-41366988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:165-445
               
               
               Cow position:chr3:59001034-59000760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 95

               
               
               Conread position:165-447
               
               
               Cow position:chr3:26920608-26920902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:165-448
               
               
               Cow position:chr3:14552589-14552870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr3:53592989-53592694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:165-448
               
               
               Cow position:chr3:65968866-65969162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 281

               
               
               Conread position:165-448
               
               
               Cow position:chr3:70401614-70401892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 120

               
               
               Conread position:165-448
               
               
               Cow position:chr3:71246748-71247020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):165, 93

               
               
               Conread position:165-448
               
               
               Cow position:chr3:73708765-73709042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 26

               
               
               Conread position:166-400
               
               
               Cow position:chr3:31903396-31903165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):135, 34

               
               
               Conread position:166-425
               
               
               Cow position:chr3:15661989-15661728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:166-445
               
               
               Cow position:chr3:58767001-58767255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:166-447
               
               
               Cow position:chr3:7566707-7566423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:166-447
               
               
               Cow position:chr3:7763375-7763650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:166-447
               
               
               Cow position:chr3:69961999-69961721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:166-447
               
               
               Cow position:chr3:75727877-75727590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 159

               
               
               Conread position:166-448
               
               
               Cow position:chr3:210034-210314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:166-448
               
               
               Cow position:chr3:5101048-5100777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:166-448
               
               
               Cow position:chr3:5365398-5365672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr3:31047230-31046956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:166-448
               
               
               Cow position:chr3:31771412-31771677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:166-448
               
               
               Cow position:chr3:46900907-46901194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):102, 243

               
               
               Conread position:166-448
               
               
               Cow position:chr3:49218595-49218319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:166-448
               
               
               Cow position:chr3:54959903-54960184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):135, 102

               
               
               Conread position:166-448
               
               
               Cow position:chr3:57554135-57553853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:166-448
               
               
               Cow position:chr3:57577411-57577692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):96, 21

               
               
               Conread position:166-448
               
               
               Cow position:chr3:59630788-59630514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):30, 133

               
               
               Conread position:166-448
               
               
               Cow position:chr3:60597265-60597539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:166-448
               
               
               Cow position:chr3:66610126-66609847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr3:83490788-83491081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):31, 142

               
               
               Conread position:166-448
               
               
               Cow position:chr3:84000323-84000608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:167-370
               
               
               Cow position:chr3:61467322-61467525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:167-436
               
               
               Cow position:chr3:67161645-67161927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 278

               
               
               Conread position:167-443
               
               
               Cow position:chr3:78443849-78443577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:168-442
               
               
               Cow position:chr3:70333759-70333492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):153, 34

               
               
               Conread position:168-443
               
               
               Cow position:chr3:3032112-3032399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:168-448
               
               
               Cow position:chr3:52863469-52863189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 43

               
               
               Conread position:168-448
               
               
               Cow position:chr3:70334989-70334700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:170-445
               
               
               Cow position:chr3:59271275-59271535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:172-414
               
               
               Cow position:chr3:48296429-48296674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:172-418
               
               
               Cow position:chr3:7858070-7858336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 259

               
               
               Conread position:172-446
               
               
               Cow position:chr3:53270544-53270823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 151

               
               
               Conread position:172-448
               
               
               Cow position:chr3:19708381-19708109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:172-448
               
               
               Cow position:chr3:48241339-48241613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:172-448
               
               
               Cow position:chr3:55970225-55970502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:173-432
               
               
               Cow position:chr3:55010436-55010181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:173-445
               
               
               Cow position:chr3:43528518-43528244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:173-447
               
               
               Cow position:chr3:17456550-17456274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 153

               
               
               Conread position:173-447
               
               
               Cow position:chr3:77365575-77365296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:173-448
               
               
               Cow position:chr3:34270650-34270912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:173-448
               
               
               Cow position:chr3:68583283-68583009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 87

               
               
               Conread position:174-448
               
               
               Cow position:chr3:5374055-5374327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:176-420
               
               
               Cow position:chr3:42588071-42588329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:176-441
               
               
               Cow position:chr3:49731915-49731651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 92

               
               
               Conread position:176-445
               
               
               Cow position:chr3:36570328-36570053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 149

               
               
               Conread position:176-446
               
               
               Cow position:chr3:53046935-53046666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:176-448
               
               
               Cow position:chr3:42367767-42367516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:176-448
               
               
               Cow position:chr3:44101703-44101963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:176-448
               
               
               Cow position:chr3:75158087-75158356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):20, 88

               
               
               Conread position:177-448
               
               
               Cow position:chr3:73394843-73395111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:178-447
               
               
               Cow position:chr3:81471376-81471102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:178-448
               
               
               Cow position:chr3:2506755-2506483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:178-448
               
               
               Cow position:chr3:57624187-57624459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:178-448
               
               
               Cow position:chr3:74499948-74500238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 275

               
               
               Conread position:179-448
               
               
               Cow position:chr3:15052212-15051953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:180-448
               
               
               Cow position:chr3:75046144-75045878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:181-448
               
               
               Cow position:chr3:79208276-79207991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 270

               
               
               Conread position:182-415
               
               
               Cow position:chr3:28939187-28938941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:184-448
               
               
               Cow position:chr3:51578591-51578326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:188-427
               
               
               Cow position:chr3:49454969-49455213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):14, 135

               
               
               Conread position:189-446
               
               
               Cow position:chr3:44535028-44534766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:190-441
               
               
               Cow position:chr3:50614375-50614629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:190-442
               
               
               Cow position:chr3:73590262-73590005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:194-436
               
               
               Cow position:chr3:61143834-61144082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 132

               
               
               Conread position:195-431
               
               
               Cow position:chr3:4087424-4087180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:196-446
               
               
               Cow position:chr3:22820312-22820565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):105, 70

               
               
               Conread position:198-400
               
               
               Cow position:chr3:26970570-26970775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 130

               
               
               Conread position:198-448
               
               
               Cow position:chr3:48578586-48578834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:201-448
               
               
               Cow position:chr3:34937589-34937841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:202-448
               
               
               Cow position:chr3:52652325-52652086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 58

               
               
               Conread position:203-448
               
               
               Cow position:chr3:15752878-15752637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):98, 56

               
               
               Conread position:204-448
               
               
               Cow position:chr3:74878838-74878594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:208-395
               
               
               Cow position:chr3:4861442-4861626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:216-448
               
               
               Cow position:chr3:83201765-83201530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:218-446
               
               
               Cow position:chr3:17447843-17447619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):112, 50

               
               
               Conread position:220-448
               
               
               Cow position:chr3:67930411-67930188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:230-448
               
               
               Cow position:chr3:11711729-11711960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 216

               
               
               Conread position:232-448
               
               
               Cow position:chr3:16656702-16656496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:233-448
               
               
               Cow position:chr3:15859891-15859671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:234-437
               
               
               Cow position:chr3:55063087-55062887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:237-445
               
               
               Cow position:chr3:4319494-4319703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:238-448
               
               
               Cow position:chr3:78896433-78896642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:239-446
               
               
               Cow position:chr3:25059859-25060073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 85

               
               
               Conread position:249-448
               
               
               Cow position:chr3:55712221-55712435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):13, 199

               
               
               Conread position:252-443
               
               
               Cow position:chr3:14598745-14598937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:259-431
               
               
               Cow position:chr3:34669925-34669748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:260-445
               
               
               Cow position:chr3:61024500-61024309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 43

               
               
               Conread position:264-445
               
               
               Cow position:chr3:83708160-83707981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:265-448
               
               
               Cow position:chr3:54100913-54100731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:267-445
               
               
               Cow position:chr3:76268169-76267983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 171

               
               
               Conread position:272-448
               
               
               Cow position:chr3:81359295-81359112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 116

               
               
               Conread position:273-448
               
               
               Cow position:chr3:30222003-30222185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):14, 167

               
               
               Conread position:275-436
               
               
               Cow position:chr3:27212183-27212347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:275-448
               
               
               Cow position:chr3:3638007-3638180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:275-448
               
               
               Cow position:chr3:63269046-63269218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:278-448
               
               
               Cow position:chr3:55819571-55819753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 167

               
               
               Conread position:287-448
               
               
               Cow position:chr3:23037797-23037625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:287-448
               
               
               Cow position:chr3:48810804-48810650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:291-447
               
               
               Cow position:chr3:75687602-75687443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:291-448
               
               
               Cow position:chr3:59884236-59884074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:294-448
               
               
               Cow position:chr3:46541987-46541834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:298-448
               
               
               Cow position:chr3:15231873-15232026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:301-446
               
               
               Cow position:chr3:53192574-53192433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:301-448
               
               
               Cow position:chr3:77581956-77582104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:313-448
               
               
               Cow position:chr3:43726935-43727074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:314-447
               
               
               Cow position:chr3:80468816-80468682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:315-447
               
               
               Cow position:chr3:54552021-54551887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:321-448
               
               
               Cow position:chr3:59621779-59621653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:3-448
               
               
               Cow position:chr4:25889252-25888820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:7-431
               
               
               Cow position:chr4:53999919-53999514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 131

               
               
               Conread position:7-448
               
               
               Cow position:chr4:34383747-34383329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 28

               
               
               Conread position:8-448
               
               
               Cow position:chr4:66548185-66547756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:11-448
               
               
               Cow position:chr4:21370981-21371403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:16-447
               
               
               Cow position:chr4:51783781-51784191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 79

               
               
               Conread position:17-448
               
               
               Cow position:chr4:51740129-51739696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 249

               
               
               Conread position:35-448
               
               
               Cow position:chr4:11022048-11021639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 97

               
               
               Conread position:58-448
               
               
               Cow position:chr4:52167213-52166839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 24

               
               
               Conread position:61-448
               
               
               Cow position:chr4:14414730-14414331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:78-448
               
               
               Cow position:chr4:52748802-52748442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:82-447
               
               
               Cow position:chr4:46591297-46591678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:88-448
               
               
               Cow position:chr4:35940363-35939995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:90-447
               
               
               Cow position:chr4:47348487-47348840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 83

               
               
               Conread position:105-442
               
               
               Cow position:chr4:36724714-36725047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):197, 40

               
               
               Conread position:110-437
               
               
               Cow position:chr4:22236805-22236475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:127-448
               
               
               Cow position:chr4:3836965-3837286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 5

               
               
               Conread position:136-446
               
               
               Cow position:chr4:54930718-54930409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 93

               
               
               Conread position:138-442
               
               
               Cow position:chr4:66256384-66256692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:140-448
               
               
               Cow position:chr4:22073605-22073308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):161, 34

               
               
               Conread position:140-448
               
               
               Cow position:chr4:45589881-45589586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:143-447
               
               
               Cow position:chr4:22345310-22345009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):55, 155

               
               
               Conread position:146-448
               
               
               Cow position:chr4:8801210-8801520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:149-448
               
               
               Cow position:chr4:4084735-4084438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 111

               
               
               Conread position:149-448
               
               
               Cow position:chr4:22051758-22051459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:149-448
               
               
               Cow position:chr4:27755596-27755292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:152-448
               
               
               Cow position:chr4:15439310-15439588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:153-445
               
               
               Cow position:chr4:41186187-41185901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:153-446
               
               
               Cow position:chr4:28772352-28772057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 132

               
               
               Conread position:153-448
               
               
               Cow position:chr4:22849995-22849704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):48, 108

               
               
               Conread position:154-448
               
               
               Cow position:chr4:34166255-34165960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):148, 44

               
               
               Conread position:155-405
               
               
               Cow position:chr4:57931628-57931883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):147, 131

               
               
               Conread position:155-431
               
               
               Cow position:chr4:3475349-3475626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:158-377
               
               
               Cow position:chr4:62567125-62567353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:158-396
               
               
               Cow position:chr4:54501730-54501489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):6, 112

               
               
               Conread position:159-448
               
               
               Cow position:chr4:56240124-56239848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:160-445
               
               
               Cow position:chr4:4736763-4737024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):141, 14

               
               
               Conread position:161-319
               
               
               Cow position:chr4:61399702-61399550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):140, 43

               
               
               Conread position:161-445
               
               
               Cow position:chr4:31023168-31023461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:163-414
               
               
               Cow position:chr4:49992811-49993052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:163-432
               
               
               Cow position:chr4:11099940-11099670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:163-448
               
               
               Cow position:chr4:37935556-37935273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:163-448
               
               
               Cow position:chr4:49629222-49629491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:163-448
               
               
               Cow position:chr4:53125864-53126126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):167, 38

               
               
               Conread position:164-448
               
               
               Cow position:chr4:39128255-39128554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:165-399
               
               
               Cow position:chr4:57555693-57555934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:165-439
               
               
               Cow position:chr4:30779108-30778823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:165-445
               
               
               Cow position:chr4:19313732-19314021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 277

               
               
               Conread position:165-445
               
               
               Cow position:chr4:48137641-48137921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 22

               
               
               Conread position:165-447
               
               
               Cow position:chr4:30974064-30974347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 149

               
               
               Conread position:165-448
               
               
               Cow position:chr4:3850280-3850563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 158

               
               
               Conread position:165-448
               
               
               Cow position:chr4:11671179-11671464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 149

               
               
               Conread position:165-448
               
               
               Cow position:chr4:23853931-23854192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:165-448
               
               
               Cow position:chr4:27276814-27276532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 122

               
               
               Conread position:165-448
               
               
               Cow position:chr4:45738755-45738463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:165-448
               
               
               Cow position:chr4:56570532-56570818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:165-448
               
               
               Cow position:chr4:65815965-65815695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:166-346
               
               
               Cow position:chr4:2671540-2671364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 95

               
               
               Conread position:166-365
               
               
               Cow position:chr4:7571137-7571338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:166-391
               
               
               Cow position:chr4:29237422-29237203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:166-443
               
               
               Cow position:chr4:62317166-62317448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:166-443
               
               
               Cow position:chr4:69343444-69343711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):135, 94

               
               
               Conread position:166-445
               
               
               Cow position:chr4:61215270-61214986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:166-446
               
               
               Cow position:chr4:19584432-19584726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 281

               
               
               Conread position:166-447
               
               
               Cow position:chr4:8133806-8133529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:166-447
               
               
               Cow position:chr4:10055939-10056221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:166-447
               
               
               Cow position:chr4:67444873-67445156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:166-448
               
               
               Cow position:chr4:20654-20924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):115, 18

               
               
               Conread position:166-448
               
               
               Cow position:chr4:480279-479996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 156

               
               
               Conread position:166-448
               
               
               Cow position:chr4:12003951-12004230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr4:12591483-12591202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr4:18974165-18974435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):136, 38

               
               
               Conread position:166-448
               
               
               Cow position:chr4:22138508-22138210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:166-448
               
               
               Cow position:chr4:32260119-32259833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:166-448
               
               
               Cow position:chr4:45662772-45662499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:167-442
               
               
               Cow position:chr4:11090957-11090702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):134, 93

               
               
               Conread position:167-446
               
               
               Cow position:chr4:203419-203133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):29, 159

               
               
               Conread position:167-448
               
               
               Cow position:chr4:509169-508897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:168-443
               
               
               Cow position:chr4:43370120-43369839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:168-446
               
               
               Cow position:chr4:68764247-68764531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:170-396
               
               
               Cow position:chr4:43543002-43542776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 176

               
               
               Conread position:170-442
               
               
               Cow position:chr4:26400689-26400965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 227

               
               
               Conread position:170-448
               
               
               Cow position:chr4:36893085-36893371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 154

               
               
               Conread position:170-448
               
               
               Cow position:chr4:46597115-46597391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 90

               
               
               Conread position:170-448
               
               
               Cow position:chr4:65650393-65650118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:172-400
               
               
               Cow position:chr4:37342851-37343079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 126

               
               
               Conread position:172-415
               
               
               Cow position:chr4:60897539-60897295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:172-445
               
               
               Cow position:chr4:43495636-43495906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):105, 88

               
               
               Conread position:172-447
               
               
               Cow position:chr4:16339858-16339589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):107, 87

               
               
               Conread position:172-448
               
               
               Cow position:chr4:10731953-10732235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 152

               
               
               Conread position:173-448
               
               
               Cow position:chr4:34641994-34641714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):28, 129

               
               
               Conread position:173-448
               
               
               Cow position:chr4:46060681-46060954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:175-429
               
               
               Cow position:chr4:43909489-43909739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:176-445
               
               
               Cow position:chr4:19561433-19561689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:176-448
               
               
               Cow position:chr4:5984307-5984032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):25, 228

               
               
               Conread position:176-448
               
               
               Cow position:chr4:19316259-19315993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:176-448
               
               
               Cow position:chr4:32725962-32726236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:176-448
               
               
               Cow position:chr4:41301253-41300981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:176-448
               
               
               Cow position:chr4:49424576-49424842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:176-448
               
               
               Cow position:chr4:55395506-55395775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:176-448
               
               
               Cow position:chr4:63119493-63119227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:177-448
               
               
               Cow position:chr4:34310716-34310441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):24, 148

               
               
               Conread position:178-429
               
               
               Cow position:chr4:657079-656819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:178-446
               
               
               Cow position:chr4:54975048-54975306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 97

               
               
               Conread position:179-448
               
               
               Cow position:chr4:13255836-13256098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:180-446
               
               
               Cow position:chr4:49794421-49794678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:180-447
               
               
               Cow position:chr4:31004662-31004398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):126, 80

               
               
               Conread position:181-398
               
               
               Cow position:chr4:59008626-59008409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):99, 79

               
               
               Conread position:181-448
               
               
               Cow position:chr4:25879139-25879409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:181-448
               
               
               Cow position:chr4:45367479-45367751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:181-448
               
               
               Cow position:chr4:45583385-45583107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 265

               
               
               Conread position:182-427
               
               
               Cow position:chr4:5630009-5629759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:182-440
               
               
               Cow position:chr4:20157669-20157408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:183-431
               
               
               Cow position:chr4:49089539-49089787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:183-448
               
               
               Cow position:chr4:12676558-12676815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 77

               
               
               Conread position:187-431
               
               
               Cow position:chr4:1495651-1495406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):14, 59

               
               
               Conread position:188-401
               
               
               Cow position:chr4:53447916-53447703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:191-448
               
               
               Cow position:chr4:29291275-29291528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:194-361
               
               
               Cow position:chr4:20502411-20502569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 65

               
               
               Conread position:194-448
               
               
               Cow position:chr4:65431902-65432162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):68, 49

               
               
               Conread position:195-401
               
               
               Cow position:chr4:46370568-46370780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):67, 131

               
               
               Conread position:195-431
               
               
               Cow position:chr4:65891749-65891988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):106, 54

               
               
               Conread position:195-448
               
               
               Cow position:chr4:11897541-11897283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:195-448
               
               
               Cow position:chr4:14919757-14920006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):118, 61

               
               
               Conread position:195-448
               
               
               Cow position:chr4:65538650-65538405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:207-448
               
               
               Cow position:chr4:13222406-13222173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:208-444
               
               
               Cow position:chr4:22860935-22860701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:211-446
               
               
               Cow position:chr4:10999930-10999705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):97, 64

               
               
               Conread position:216-447
               
               
               Cow position:chr4:37465805-37465585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:216-448
               
               
               Cow position:chr4:27687702-27687939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:216-448
               
               
               Cow position:chr4:44973421-44973647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:220-446
               
               
               Cow position:chr4:34924910-34924680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:221-448
               
               
               Cow position:chr4:13974188-13973958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:224-448
               
               
               Cow position:chr4:31506243-31506012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:228-373
               
               
               Cow position:chr4:29842676-29842824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:228-429
               
               
               Cow position:chr4:61088368-61088555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):102, 32

               
               
               Conread position:228-448
               
               
               Cow position:chr4:13941249-13941472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:228-448
               
               
               Cow position:chr4:36929104-36929328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:231-448
               
               
               Cow position:chr4:51768906-51769118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:232-448
               
               
               Cow position:chr4:16593878-16594096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:239-448
               
               
               Cow position:chr4:19408198-19407985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:245-444
               
               
               Cow position:chr4:33869468-33869663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:250-447
               
               
               Cow position:chr4:22741599-22741404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:262-448
               
               
               Cow position:chr4:21517183-21516991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:268-446
               
               
               Cow position:chr4:16881533-16881355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:271-445
               
               
               Cow position:chr4:5047502-5047331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:271-448
               
               
               Cow position:chr4:20147020-20147195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:271-448
               
               
               Cow position:chr4:59377748-59377921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:272-448
               
               
               Cow position:chr4:68855485-68855657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:285-448
               
               
               Cow position:chr4:52823558-52823401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:287-448
               
               
               Cow position:chr4:34369604-34369438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 150

               
               
               Conread position:288-446
               
               
               Cow position:chr4:27632300-27632457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:291-444
               
               
               Cow position:chr4:69385946-69386095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:291-448
               
               
               Cow position:chr4:36577777-36577620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:300-446
               
               
               Cow position:chr4:37732625-37732473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 139

               
               
               Conread position:304-446
               
               
               Cow position:chr4:24481797-24481659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:307-447
               
               
               Cow position:chr4:48173008-48173147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:313-448
               
               
               Cow position:chr4:65950529-65950667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 123

               
               
               Conread position:314-446
               
               
               Cow position:chr4:45073939-45074073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:315-448
               
               
               Cow position:chr4:52779728-52779862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:322-448
               
               
               Cow position:chr4:46494179-46494306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:329-442
               
               
               Cow position:chr4:26683566-26683680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:330-448
               
               
               Cow position:chr4:45013272-45013154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:1-136
               
               
               Cow position:chr5:46023549-46023415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1-136
               
               
               Cow position:chr5:46080627-46080493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1-136
               
               
               Cow position:chr5:46130151-46130017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1-172
               
               
               Cow position:chr5:13718334-13718167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:3-448
               
               
               Cow position:chr5:3639892-3639442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 14

               
               
               Conread position:3-448
               
               
               Cow position:chr5:4032378-4031944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 152

               
               
               Conread position:3-448
               
               
               Cow position:chr5:34115277-34115698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 130

               
               
               Conread position:4-406
               
               
               Cow position:chr5:40357256-40356863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 130

               
               
               Conread position:6-448
               
               
               Cow position:chr5:51999826-52000268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 126

               
               
               Conread position:6-448
               
               
               Cow position:chr5:58145004-58144556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:7-446
               
               
               Cow position:chr5:2500559-2500136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 91

               
               
               Conread position:7-448
               
               
               Cow position:chr5:31918255-31918688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 120

               
               
               Conread position:7-448
               
               
               Cow position:chr5:34300527-34300964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 11

               
               
               Conread position:7-448
               
               
               Cow position:chr5:54310963-54311381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 35

               
               
               Conread position:8-448
               
               
               Cow position:chr5:63987833-63987400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 24

               
               
               Conread position:12-426
               
               
               Cow position:chr5:39333920-39333515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:20-396
               
               
               Cow position:chr5:32963998-32963638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 49

               
               
               Conread position:77-448
               
               
               Cow position:chr5:11668495-11668140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 45

               
               
               Conread position:92-448
               
               
               Cow position:chr5:458157-458534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 329

               
               
               Conread position:95-448
               
               
               Cow position:chr5:8024511-8024148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:112-444
               
               
               Cow position:chr5:52165473-52165136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:112-448
               
               
               Cow position:chr5:41546184-41545848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:123-447
               
               
               Cow position:chr5:32697095-32696778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 131

               
               
               Conread position:125-448
               
               
               Cow position:chr5:37646832-37646498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 146

               
               
               Conread position:131-448
               
               
               Cow position:chr5:1779534-1779238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:131-448
               
               
               Cow position:chr5:49362272-49361947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:131-448
               
               
               Cow position:chr5:54350635-54350316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 130

               
               
               Conread position:132-404
               
               
               Cow position:chr5:45226098-45225821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:134-447
               
               
               Cow position:chr5:40711712-40711391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:138-344
               
               
               Cow position:chr5:2851047-2851257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:138-448
               
               
               Cow position:chr5:15478847-15479171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:140-448
               
               
               Cow position:chr5:28224194-28224498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 12

               
               
               Conread position:140-448
               
               
               Cow position:chr5:58855837-58856148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 146

               
               
               Conread position:141-402
               
               
               Cow position:chr5:34463849-34463585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:144-448
               
               
               Cow position:chr5:54713999-54713686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:146-442
               
               
               Cow position:chr5:54064522-54064815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:151-431
               
               
               Cow position:chr5:30639105-30638834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:152-448
               
               
               Cow position:chr5:49685534-49685226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 293

               
               
               Conread position:153-448
               
               
               Cow position:chr5:53842041-53842326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:160-446
               
               
               Cow position:chr5:16184846-16185131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:160-448
               
               
               Cow position:chr5:52645323-52645035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:161-431
               
               
               Cow position:chr5:28927837-28927557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 163

               
               
               Conread position:161-446
               
               
               Cow position:chr5:4617133-4617411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:161-448
               
               
               Cow position:chr5:18090483-18090783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:162-447
               
               
               Cow position:chr5:360184-359895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 8

               
               
               Conread position:162-448
               
               
               Cow position:chr5:16894017-16893726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:163-407
               
               
               Cow position:chr5:74858331-74858576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:163-431
               
               
               Cow position:chr5:64392912-64393185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):39, 161

               
               
               Conread position:163-448
               
               
               Cow position:chr5:66972160-66972474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):38, 184

               
               
               Conread position:165-365
               
               
               Cow position:chr5:70102048-70101845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):97, 124

               
               
               Conread position:165-446
               
               
               Cow position:chr5:30844872-30845156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:165-448
               
               
               Cow position:chr5:9090263-9089978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 158

               
               
               Conread position:165-448
               
               
               Cow position:chr5:34887438-34887150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:166-392
               
               
               Cow position:chr5:30816476-30816708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:166-396
               
               
               Cow position:chr5:56433562-56433797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:166-418
               
               
               Cow position:chr5:62173434-62173690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:166-429
               
               
               Cow position:chr5:43858667-43858410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:166-436
               
               
               Cow position:chr5:6130117-6130387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):135, 26

               
               
               Conread position:166-437
               
               
               Cow position:chr5:43474608-43474879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:166-442
               
               
               Cow position:chr5:43923388-43923113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:166-443
               
               
               Cow position:chr5:63647706-63647435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:166-447
               
               
               Cow position:chr5:55756681-55756374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:166-448
               
               
               Cow position:chr5:14550825-14550539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:166-448
               
               
               Cow position:chr5:29771279-29771573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:166-448
               
               
               Cow position:chr5:42845839-42845548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:166-448
               
               
               Cow position:chr5:50637592-50637870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:166-448
               
               
               Cow position:chr5:64321509-64321799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:167-392
               
               
               Cow position:chr5:60519928-60520151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):29, 104

               
               
               Conread position:167-427
               
               
               Cow position:chr5:58460643-58460372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 243

               
               
               Conread position:168-427
               
               
               Cow position:chr5:50950316-50950579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:169-447
               
               
               Cow position:chr5:29353365-29353081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:169-448
               
               
               Cow position:chr5:17063330-17063041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):28, 155

               
               
               Conread position:170-438
               
               
               Cow position:chr5:45036785-45037049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:172-393
               
               
               Cow position:chr5:3491968-3492185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:172-399
               
               
               Cow position:chr5:65933161-65932932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:172-430
               
               
               Cow position:chr5:34442025-34441760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):29, 116

               
               
               Conread position:172-448
               
               
               Cow position:chr5:36854979-36855249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:172-448
               
               
               Cow position:chr5:61839955-61840233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:173-448
               
               
               Cow position:chr5:20127822-20128097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:176-408
               
               
               Cow position:chr5:55821139-55821380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:176-440
               
               
               Cow position:chr5:46122578-46122316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:176-444
               
               
               Cow position:chr5:4218648-4218908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:176-445
               
               
               Cow position:chr5:14420574-14420297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):25, 177

               
               
               Conread position:176-445
               
               
               Cow position:chr5:20344940-20345204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:176-446
               
               
               Cow position:chr5:36868516-36868780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:176-448
               
               
               Cow position:chr5:3771617-3771893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:176-448
               
               
               Cow position:chr5:5111306-5111029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):25, 129

               
               
               Conread position:178-445
               
               
               Cow position:chr5:51490981-51490722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:178-448
               
               
               Cow position:chr5:56820487-56820216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:179-447
               
               
               Cow position:chr5:7723446-7723709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:179-448
               
               
               Cow position:chr5:26262896-26262629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:179-448
               
               
               Cow position:chr5:55068490-55068751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:181-448
               
               
               Cow position:chr5:72564538-72564809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 87

               
               
               Conread position:182-448
               
               
               Cow position:chr5:65752633-65752905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:187-448
               
               
               Cow position:chr5:62142452-62142721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:195-448
               
               
               Cow position:chr5:18898774-18899021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:195-448
               
               
               Cow position:chr5:40039980-40039723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):71, 95

               
               
               Conread position:196-395
               
               
               Cow position:chr5:57271473-57271273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:196-448
               
               
               Cow position:chr5:7140313-7140061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):105, 64

               
               
               Conread position:196-448
               
               
               Cow position:chr5:64758972-64758722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):134, 53

               
               
               Conread position:199-442
               
               
               Cow position:chr5:8994771-8994526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:203-446
               
               
               Cow position:chr5:9390334-9390596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 122

               
               
               Conread position:211-448
               
               
               Cow position:chr5:22643411-22643181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:216-431
               
               
               Cow position:chr5:4220792-4221009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:218-441
               
               
               Cow position:chr5:17644842-17644614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:218-446
               
               
               Cow position:chr5:29061111-29060884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:223-448
               
               
               Cow position:chr5:5855698-5855903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 37

               
               
               Conread position:223-448
               
               
               Cow position:chr5:47323269-47323507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:223-448
               
               
               Cow position:chr5:55928761-55928989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:227-448
               
               
               Cow position:chr5:51935005-51935235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 178

               
               
               Conread position:229-447
               
               
               Cow position:chr5:43816786-43816559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:230-448
               
               
               Cow position:chr5:29980160-29979937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:232-429
               
               
               Cow position:chr5:59115208-59115413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:232-448
               
               
               Cow position:chr5:41452839-41452620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 62

               
               
               Conread position:234-446
               
               
               Cow position:chr5:55955735-55955951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:241-439
               
               
               Cow position:chr5:62985353-62985562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 203

               
               
               Conread position:241-448
               
               
               Cow position:chr5:16214524-16214732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:244-445
               
               
               Cow position:chr5:71579013-71579218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 76

               
               
               Conread position:250-445
               
               
               Cow position:chr5:35247265-35247070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:269-448
               
               
               Cow position:chr5:45273635-45273456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:275-446
               
               
               Cow position:chr5:64140400-64140580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:275-447
               
               
               Cow position:chr5:54768040-54767865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:275-448
               
               
               Cow position:chr5:63427136-63426960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:276-446
               
               
               Cow position:chr5:7921529-7921361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:279-436
               
               
               Cow position:chr5:18289003-18289164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:287-446
               
               
               Cow position:chr5:16179643-16179480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:287-446
               
               
               Cow position:chr5:60747394-60747233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:292-448
               
               
               Cow position:chr5:13717684-13717524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):9, 147

               
               
               Conread position:295-448
               
               
               Cow position:chr5:23678814-23678654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):6, 145

               
               
               Conread position:300-448
               
               
               Cow position:chr5:56635796-56635940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:301-448
               
               
               Cow position:chr5:60448112-60448261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:305-448
               
               
               Cow position:chr5:55019194-55019337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 65

               
               
               Conread position:313-448
               
               
               Cow position:chr5:50575692-50575829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 121

               
               
               Conread position:1-435
               
               
               Cow position:chr6:56849643-56850065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:3-445
               
               
               Cow position:chr6:9751402-9750998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:7-443
               
               
               Cow position:chr6:49685207-49685639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 163

               
               
               Conread position:7-448
               
               
               Cow position:chr6:642945-642509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 66

               
               
               Conread position:7-448
               
               
               Cow position:chr6:16103600-16103137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 448

               
               
               Conread position:7-448
               
               
               Cow position:chr6:53933200-53932790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 18

               
               
               Conread position:7-448
               
               
               Cow position:chr6:67950577-67951014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 158

               
               
               Conread position:8-448
               
               
               Cow position:chr6:8804894-8804470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 91

               
               
               Conread position:8-448
               
               
               Cow position:chr6:40774721-40774273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 115

               
               
               Conread position:8-448
               
               
               Cow position:chr6:66873977-66874410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 248

               
               
               Conread position:12-448
               
               
               Cow position:chr6:45065379-45064958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 116

               
               
               Conread position:63-448
               
               
               Cow position:chr6:60057961-60057596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):199, 65

               
               
               Conread position:70-334
               
               
               Cow position:chr6:22986307-22986043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:79-448
               
               
               Cow position:chr6:38614514-38614878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 17

               
               
               Conread position:104-448
               
               
               Cow position:chr6:55282577-55282235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:109-446
               
               
               Cow position:chr6:47327337-47327011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:112-447
               
               
               Cow position:chr6:51387486-51387807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:116-431
               
               
               Cow position:chr6:24515472-24515155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:133-448
               
               
               Cow position:chr6:59069884-59069565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:135-429
               
               
               Cow position:chr6:18969024-18968739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:135-448
               
               
               Cow position:chr6:15301073-15300770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:136-448
               
               
               Cow position:chr6:52248388-52248073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:142-437
               
               
               Cow position:chr6:48344081-48344381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:142-447
               
               
               Cow position:chr6:35990472-35990178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:143-448
               
               
               Cow position:chr6:37148951-37149248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 36

               
               
               Conread position:144-446
               
               
               Cow position:chr6:17090353-17090657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:144-448
               
               
               Cow position:chr6:36470808-36470503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:150-399
               
               
               Cow position:chr6:17932859-17933096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):112, 153

               
               
               Conread position:151-448
               
               
               Cow position:chr6:6067917-6067643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:151-448
               
               
               Cow position:chr6:7824523-7824825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):111, 44

               
               
               Conread position:151-448
               
               
               Cow position:chr6:38218432-38218727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:151-448
               
               
               Cow position:chr6:60239629-60239336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:152-448
               
               
               Cow position:chr6:66532040-66531762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):149, 49

               
               
               Conread position:153-446
               
               
               Cow position:chr6:25773618-25773328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:153-448
               
               
               Cow position:chr6:38440944-38441233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:155-448
               
               
               Cow position:chr6:68049200-68049490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 113

               
               
               Conread position:157-448
               
               
               Cow position:chr6:44078288-44078577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 119

               
               
               Conread position:159-448
               
               
               Cow position:chr6:18049255-18048965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 15

               
               
               Conread position:161-448
               
               
               Cow position:chr6:10695639-10695922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:161-448
               
               
               Cow position:chr6:14958577-14958282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:161-448
               
               
               Cow position:chr6:31635912-31635629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:162-445
               
               
               Cow position:chr6:47540297-47540587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 164

               
               
               Conread position:162-448
               
               
               Cow position:chr6:5095779-5095483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:163-445
               
               
               Cow position:chr6:42565458-42565744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:163-448
               
               
               Cow position:chr6:32125839-32126115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:165-431
               
               
               Cow position:chr6:9733057-9732796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:165-438
               
               
               Cow position:chr6:60456604-60456878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:165-441
               
               
               Cow position:chr6:32287394-32287691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:165-442
               
               
               Cow position:chr6:16737795-16738072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:165-445
               
               
               Cow position:chr6:5958242-5957972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:165-445
               
               
               Cow position:chr6:6343200-6343482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:165-445
               
               
               Cow position:chr6:14839252-14838969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):97, 44

               
               
               Conread position:165-445
               
               
               Cow position:chr6:48169719-48169994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:165-445
               
               
               Cow position:chr6:53710892-53711171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:165-448
               
               
               Cow position:chr6:12337759-12338052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 110

               
               
               Conread position:165-448
               
               
               Cow position:chr6:24781789-24781496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 278

               
               
               Conread position:165-448
               
               
               Cow position:chr6:34196374-34196091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:166-394
               
               
               Cow position:chr6:24327360-24327136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:166-403
               
               
               Cow position:chr6:6264419-6264655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:166-416
               
               
               Cow position:chr6:63047351-63047606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:166-431
               
               
               Cow position:chr6:54293886-54294145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:166-443
               
               
               Cow position:chr6:14696597-14696319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 95

               
               
               Conread position:166-446
               
               
               Cow position:chr6:14850934-14850656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):136, 12

               
               
               Conread position:166-446
               
               
               Cow position:chr6:18447733-18447459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 120

               
               
               Conread position:166-447
               
               
               Cow position:chr6:130389-130103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 157

               
               
               Conread position:166-447
               
               
               Cow position:chr6:11169483-11169758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:166-447
               
               
               Cow position:chr6:17557150-17557439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):94, 163

               
               
               Conread position:166-447
               
               
               Cow position:chr6:28148026-28148312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:166-448
               
               
               Cow position:chr6:34075799-34076088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:166-448
               
               
               Cow position:chr6:35181478-35181198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:168-446
               
               
               Cow position:chr6:54490963-54490676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:168-448
               
               
               Cow position:chr6:16410973-16411250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 91

               
               
               Conread position:170-407
               
               
               Cow position:chr6:35103548-35103313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):119, 88

               
               
               Conread position:170-440
               
               
               Cow position:chr6:20231046-20230775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:170-448
               
               
               Cow position:chr6:10176522-10176243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:171-447
               
               
               Cow position:chr6:37199769-37199469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 286

               
               
               Conread position:171-448
               
               
               Cow position:chr6:611341-611609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:171-448
               
               
               Cow position:chr6:35435783-35436053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:172-420
               
               
               Cow position:chr6:35539718-35539475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:172-447
               
               
               Cow position:chr6:51893732-51893442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 164

               
               
               Conread position:172-448
               
               
               Cow position:chr6:7190338-7190060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:172-448
               
               
               Cow position:chr6:21534840-21535096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:172-448
               
               
               Cow position:chr6:44098866-44099146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:172-448
               
               
               Cow position:chr6:61515416-61515129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):90, 255

               
               
               Conread position:173-429
               
               
               Cow position:chr6:4864752-4864506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:173-448
               
               
               Cow position:chr6:242596-242861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:174-409
               
               
               Cow position:chr6:30786365-30786138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:175-446
               
               
               Cow position:chr6:17997531-17997262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:176-401
               
               
               Cow position:chr6:8965875-8966102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:176-447
               
               
               Cow position:chr6:29239728-29239999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 84

               
               
               Conread position:178-448
               
               
               Cow position:chr6:62925208-62924939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:179-448
               
               
               Cow position:chr6:57405336-57405066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:182-437
               
               
               Cow position:chr6:34115986-34116245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:182-448
               
               
               Cow position:chr6:47988981-47989231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:183-398
               
               
               Cow position:chr6:54864874-54864661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 77

               
               
               Conread position:184-448
               
               
               Cow position:chr6:19695600-19695868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):93, 76

               
               
               Conread position:184-448
               
               
               Cow position:chr6:61137158-61137434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 149

               
               
               Conread position:185-442
               
               
               Cow position:chr6:5114254-5113996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:185-448
               
               
               Cow position:chr6:38641292-38641556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:189-448
               
               
               Cow position:chr6:28148643-28148894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):161, 20

               
               
               Conread position:194-439
               
               
               Cow position:chr6:46292534-46292296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 66

               
               
               Conread position:194-445
               
               
               Cow position:chr6:28318213-28318455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 75

               
               
               Conread position:195-440
               
               
               Cow position:chr6:415900-416157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:195-447
               
               
               Cow position:chr6:16191472-16191736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:195-448
               
               
               Cow position:chr6:6400753-6401013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 108

               
               
               Conread position:202-448
               
               
               Cow position:chr6:47799110-47799352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:202-448
               
               
               Cow position:chr6:65259655-65259429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:204-447
               
               
               Cow position:chr6:30973854-30974104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:213-448
               
               
               Cow position:chr6:15447385-15447139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:216-442
               
               
               Cow position:chr6:49604509-49604729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:217-448
               
               
               Cow position:chr6:12668934-12669158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:217-448
               
               
               Cow position:chr6:65264708-65264483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:219-448
               
               
               Cow position:chr6:54287909-54288135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:221-448
               
               
               Cow position:chr6:19012900-19013130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:223-443
               
               
               Cow position:chr6:16764809-16764603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:223-448
               
               
               Cow position:chr6:11246597-11246825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:225-448
               
               
               Cow position:chr6:12543098-12542871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:228-443
               
               
               Cow position:chr6:60850552-60850332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:228-444
               
               
               Cow position:chr6:14914401-14914178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:228-444
               
               
               Cow position:chr6:35993415-35993639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 145

               
               
               Conread position:228-448
               
               
               Cow position:chr6:44984164-44984389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:234-447
               
               
               Cow position:chr6:27815625-27815414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):164, 32

               
               
               Conread position:234-448
               
               
               Cow position:chr6:60739859-60740073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:236-448
               
               
               Cow position:chr6:19446106-19446312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:238-448
               
               
               Cow position:chr6:4692136-4691916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:245-448
               
               
               Cow position:chr6:582412-582213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:266-448
               
               
               Cow position:chr6:5413692-5413881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 173

               
               
               Conread position:267-448
               
               
               Cow position:chr6:38233836-38234018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:275-448
               
               
               Cow position:chr6:19351270-19351099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:276-448
               
               
               Cow position:chr6:23402104-23401933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:285-448
               
               
               Cow position:chr6:58370647-58370817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:286-448
               
               
               Cow position:chr6:60667313-60667472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:288-406
               
               
               Cow position:chr6:61644939-61644814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:291-448
               
               
               Cow position:chr6:20196393-20196240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:302-448
               
               
               Cow position:chr6:6673014-6673161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:314-448
               
               
               Cow position:chr6:2623704-2623837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:314-448
               
               
               Cow position:chr6:54365081-54364939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 129

               
               
               Conread position:1-442
               
               
               Cow position:chr7:24718930-24718476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 236

               
               
               Conread position:1-448
               
               
               Cow position:chr7:34568810-34569249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 326

               
               
               Conread position:1-448
               
               
               Cow position:chr7:40991344-40991766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 14

               
               
               Conread position:3-444
               
               
               Cow position:chr7:38060809-38060369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 85

               
               
               Conread position:3-448
               
               
               Cow position:chr7:20536971-20537428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 271

               
               
               Conread position:4-440
               
               
               Cow position:chr7:34553895-34554319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:7-439
               
               
               Cow position:chr7:40311713-40311292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:7-446
               
               
               Cow position:chr7:19096411-19095968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 136

               
               
               Conread position:7-448
               
               
               Cow position:chr7:40121100-40121528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:8-447
               
               
               Cow position:chr7:12408604-12408180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 82

               
               
               Conread position:8-448
               
               
               Cow position:chr7:58953288-58953736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 148

               
               
               Conread position:11-416
               
               
               Cow position:chr7:25262978-25263409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 290

               
               
               Conread position:11-448
               
               
               Cow position:chr7:16021922-16022356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 68

               
               
               Conread position:12-448
               
               
               Cow position:chr7:45748227-45747784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 217

               
               
               Conread position:18-447
               
               
               Cow position:chr7:25860535-25860135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 53

               
               
               Conread position:24-435
               
               
               Cow position:chr7:42245045-42244651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:77-448
               
               
               Cow position:chr7:37951877-37952240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 71

               
               
               Conread position:80-448
               
               
               Cow position:chr7:36830352-36830716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:94-446
               
               
               Cow position:chr7:600059-600395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 66

               
               
               Conread position:125-444
               
               
               Cow position:chr7:3283098-3283421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:125-444
               
               
               Cow position:chr7:3311586-3311901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:129-446
               
               
               Cow position:chr7:29280279-29279960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:130-448
               
               
               Cow position:chr7:19230762-19230454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:141-448
               
               
               Cow position:chr7:52785044-52784739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:142-364
               
               
               Cow position:chr7:46857203-46856982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:142-446
               
               
               Cow position:chr7:63968451-63968153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 122

               
               
               Conread position:149-420
               
               
               Cow position:chr7:25415157-25415429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:150-448
               
               
               Cow position:chr7:63113010-63112714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:150-448
               
               
               Cow position:chr7:69066461-69066757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):151, 23

               
               
               Conread position:151-396
               
               
               Cow position:chr7:45658622-45658378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 50

               
               
               Conread position:153-448
               
               
               Cow position:chr7:44596925-44596637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):148, 48

               
               
               Conread position:154-448
               
               
               Cow position:chr7:17756804-17757095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:154-448
               
               
               Cow position:chr7:20176940-20176643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:154-448
               
               
               Cow position:chr7:40321254-40321549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:155-446
               
               
               Cow position:chr7:48020204-48020479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):146, 10

               
               
               Conread position:156-382
               
               
               Cow position:chr7:14187472-14187243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 134

               
               
               Conread position:156-404
               
               
               Cow position:chr7:20415535-20415284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 7

               
               
               Conread position:156-406
               
               
               Cow position:chr7:61551677-61551920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:157-405
               
               
               Cow position:chr7:64948889-64949131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:157-448
               
               
               Cow position:chr7:40067426-40067722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 165

               
               
               Conread position:160-445
               
               
               Cow position:chr7:24220447-24220726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:160-448
               
               
               Cow position:chr7:25512349-25512063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 132

               
               
               Conread position:161-447
               
               
               Cow position:chr7:10551194-10550914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:161-448
               
               
               Cow position:chr7:40953090-40952797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:162-447
               
               
               Cow position:chr7:45592815-45593099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:162-448
               
               
               Cow position:chr7:33385707-33385983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:163-448
               
               
               Cow position:chr7:11870055-11869774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 78

               
               
               Conread position:164-445
               
               
               Cow position:chr7:52776978-52776698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:164-448
               
               
               Cow position:chr7:205529-205800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:164-448
               
               
               Cow position:chr7:21649876-21650160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:164-448
               
               
               Cow position:chr7:39042377-39042659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 115

               
               
               Conread position:165-396
               
               
               Cow position:chr7:53034536-53034311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:165-406
               
               
               Cow position:chr7:4418690-4418442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:165-427
               
               
               Cow position:chr7:54637852-54637587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:165-431
               
               
               Cow position:chr7:35652303-35652027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 120

               
               
               Conread position:165-440
               
               
               Cow position:chr7:17816535-17816802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:165-442
               
               
               Cow position:chr7:46116876-46116596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:165-443
               
               
               Cow position:chr7:59030773-59031041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:165-446
               
               
               Cow position:chr7:31694840-31694580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):136, 22

               
               
               Conread position:165-448
               
               
               Cow position:chr7:27349448-27349176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):37, 47

               
               
               Conread position:165-448
               
               
               Cow position:chr7:34412514-34412212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:165-448
               
               
               Cow position:chr7:37142588-37142311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:165-448
               
               
               Cow position:chr7:66894762-66894478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:166-364
               
               
               Cow position:chr7:54857141-54857337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:166-380
               
               
               Cow position:chr7:14134505-14134283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:166-413
               
               
               Cow position:chr7:32824475-32824227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:166-429
               
               
               Cow position:chr7:3728868-3729131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:166-442
               
               
               Cow position:chr7:17967341-17967068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:166-443
               
               
               Cow position:chr7:40579278-40579553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:166-443
               
               
               Cow position:chr7:42431601-42431885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:166-443
               
               
               Cow position:chr7:67850126-67850412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 276

               
               
               Conread position:166-445
               
               
               Cow position:chr7:9193466-9193179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:166-445
               
               
               Cow position:chr7:21573063-21573351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 83

               
               
               Conread position:166-445
               
               
               Cow position:chr7:63771680-63771962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:166-447
               
               
               Cow position:chr7:40008595-40008889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr7:268773-269039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:166-448
               
               
               Cow position:chr7:6057907-6058189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:166-448
               
               
               Cow position:chr7:9074837-9075113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:166-448
               
               
               Cow position:chr7:9136616-9136899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:166-448
               
               
               Cow position:chr7:14536494-14536216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:166-448
               
               
               Cow position:chr7:40566851-40567129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:166-448
               
               
               Cow position:chr7:44454488-44454219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:166-448
               
               
               Cow position:chr7:48722128-48721838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 157

               
               
               Conread position:166-448
               
               
               Cow position:chr7:49106425-49106138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:166-448
               
               
               Cow position:chr7:53361599-53361327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr7:57259253-57258962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:167-346
               
               
               Cow position:chr7:41299650-41299475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:167-442
               
               
               Cow position:chr7:15654296-15654025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:167-448
               
               
               Cow position:chr7:9146424-9146709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:167-448
               
               
               Cow position:chr7:44590068-44589792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:169-445
               
               
               Cow position:chr7:12212826-12212541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 156

               
               
               Conread position:169-448
               
               
               Cow position:chr7:67819902-67820177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:170-405
               
               
               Cow position:chr7:39149718-39149961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):31, 155

               
               
               Conread position:170-446
               
               
               Cow position:chr7:31315102-31315368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:172-391
               
               
               Cow position:chr7:63085345-63085563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:172-401
               
               
               Cow position:chr7:9145699-9145465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:172-407
               
               
               Cow position:chr7:20968215-20968448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:172-407
               
               
               Cow position:chr7:60121299-60121535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:172-439
               
               
               Cow position:chr7:58170524-58170793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:172-445
               
               
               Cow position:chr7:14520254-14519983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:172-445
               
               
               Cow position:chr7:33804760-33805028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):145, 48

               
               
               Conread position:172-447
               
               
               Cow position:chr7:64236506-64236223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 45

               
               
               Conread position:172-448
               
               
               Cow position:chr7:1721185-1720905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:172-448
               
               
               Cow position:chr7:2172540-2172809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:172-448
               
               
               Cow position:chr7:19267586-19267307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:172-448
               
               
               Cow position:chr7:23568957-23568674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 152

               
               
               Conread position:172-448
               
               
               Cow position:chr7:27283462-27283739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):29, 153

               
               
               Conread position:172-448
               
               
               Cow position:chr7:35893194-35893478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 135

               
               
               Conread position:173-377
               
               
               Cow position:chr7:61601594-61601387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:173-420
               
               
               Cow position:chr7:1321108-1320871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:173-440
               
               
               Cow position:chr7:54513637-54513352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 278

               
               
               Conread position:174-406
               
               
               Cow position:chr7:40510420-40510654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 151

               
               
               Conread position:175-446
               
               
               Cow position:chr7:46823454-46823729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:176-346
               
               
               Cow position:chr7:54583468-54583632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:176-445
               
               
               Cow position:chr7:26915101-26915375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):33, 149

               
               
               Conread position:176-448
               
               
               Cow position:chr7:19798145-19797867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:176-448
               
               
               Cow position:chr7:44095154-44094873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:176-448
               
               
               Cow position:chr7:48406713-48406434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:177-428
               
               
               Cow position:chr7:39401743-39402001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 148

               
               
               Conread position:177-441
               
               
               Cow position:chr7:2896549-2896821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 61

               
               
               Conread position:178-446
               
               
               Cow position:chr7:52718845-52718576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 99

               
               
               Conread position:179-438
               
               
               Cow position:chr7:24564826-24564566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:179-444
               
               
               Cow position:chr7:67816698-67816961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:180-444
               
               
               Cow position:chr7:59843964-59843687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 81

               
               
               Conread position:180-447
               
               
               Cow position:chr7:63946780-63946526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:180-448
               
               
               Cow position:chr7:3336758-3336489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:180-448
               
               
               Cow position:chr7:38696639-38696904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:182-447
               
               
               Cow position:chr7:53268985-53269260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):106, 78

               
               
               Conread position:182-448
               
               
               Cow position:chr7:44986451-44986715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:183-405
               
               
               Cow position:chr7:14712399-14712183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:184-448
               
               
               Cow position:chr7:256012-255751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:184-448
               
               
               Cow position:chr7:40303468-40303204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 101

               
               
               Conread position:188-446
               
               
               Cow position:chr7:61765113-61765377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):21, 79

               
               
               Conread position:189-448
               
               
               Cow position:chr7:39444801-39444544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:192-444
               
               
               Cow position:chr7:39144495-39144753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 9

               
               
               Conread position:193-448
               
               
               Cow position:chr7:64135659-64135406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):98, 67

               
               
               Conread position:194-445
               
               
               Cow position:chr7:11715510-11715773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):68, 130

               
               
               Conread position:195-441
               
               
               Cow position:chr7:12202109-12201872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):107, 49

               
               
               Conread position:195-448
               
               
               Cow position:chr7:13963010-13963272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr7:27551366-27551120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:196-443
               
               
               Cow position:chr7:10527080-10526818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:196-448
               
               
               Cow position:chr7:37697612-37697862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):105, 64

               
               
               Conread position:197-448
               
               
               Cow position:chr7:32079268-32079513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 63

               
               
               Conread position:198-448
               
               
               Cow position:chr7:41328228-41327977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:199-448
               
               
               Cow position:chr7:67872993-67873254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 249

               
               
               Conread position:216-448
               
               
               Cow position:chr7:56347988-56347764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:218-448
               
               
               Cow position:chr7:32372689-32372922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:223-448
               
               
               Cow position:chr7:63914026-63913810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:228-447
               
               
               Cow position:chr7:40051919-40051699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:228-448
               
               
               Cow position:chr7:41464303-41464532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 133

               
               
               Conread position:230-442
               
               
               Cow position:chr7:44942301-44942510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:230-448
               
               
               Cow position:chr7:2897003-2897230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:234-448
               
               
               Cow position:chr7:22651980-22651766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:243-448
               
               
               Cow position:chr7:2579389-2579176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:248-446
               
               
               Cow position:chr7:5300531-5300332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:257-427
               
               
               Cow position:chr7:5853229-5853396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:257-448
               
               
               Cow position:chr7:68909058-68909248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:264-448
               
               
               Cow position:chr7:23636581-23636767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:266-445
               
               
               Cow position:chr7:7506258-7506073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:267-448
               
               
               Cow position:chr7:41392853-41393036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:271-447
               
               
               Cow position:chr7:58923278-58923458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):30, 166

               
               
               Conread position:275-444
               
               
               Cow position:chr7:5212592-5212419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):27, 48

               
               
               Conread position:279-429
               
               
               Cow position:chr7:19846257-19846105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:279-447
               
               
               Cow position:chr7:55085546-55085716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:280-416
               
               
               Cow position:chr7:58296997-58296857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:287-448
               
               
               Cow position:chr7:23251664-23251501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:298-448
               
               
               Cow position:chr7:36774270-36774429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:301-448
               
               
               Cow position:chr7:69132865-69133019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:305-448
               
               
               Cow position:chr7:18253417-18253562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:314-448
               
               
               Cow position:chr7:40308591-40308458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 87

               
               
               Conread position:315-448
               
               
               Cow position:chr7:53606397-53606264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:317-446
               
               
               Cow position:chr7:63679005-63679136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:320-448
               
               
               Cow position:chr7:52758406-52758534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:6-448
               
               
               Cow position:chr8:6724772-6724307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 335

               
               
               Conread position:7-444
               
               
               Cow position:chr8:43439208-43439638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 11

               
               
               Conread position:7-448
               
               
               Cow position:chr8:1472669-1473096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 14

               
               
               Conread position:7-448
               
               
               Cow position:chr8:18081138-18081566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:8-394
               
               
               Cow position:chr8:24868151-24867768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 49

               
               
               Conread position:8-443
               
               
               Cow position:chr8:28884430-28884849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 131

               
               
               Conread position:8-448
               
               
               Cow position:chr8:225782-225337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:8-448
               
               
               Cow position:chr8:42794729-42794292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 17

               
               
               Conread position:11-445
               
               
               Cow position:chr8:1834531-1834948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 82

               
               
               Conread position:39-448
               
               
               Cow position:chr8:44437384-44437792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 225

               
               
               Conread position:62-448
               
               
               Cow position:chr8:45128046-45127673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 68

               
               
               Conread position:108-448
               
               
               Cow position:chr8:47136321-47135981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:127-431
               
               
               Cow position:chr8:17103711-17103407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:127-447
               
               
               Cow position:chr8:29026909-29026608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:127-448
               
               
               Cow position:chr8:15395142-15394830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 5

               
               
               Conread position:130-438
               
               
               Cow position:chr8:16023924-16023619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):132, 44

               
               
               Conread position:130-446
               
               
               Cow position:chr8:41905893-41905591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:131-418
               
               
               Cow position:chr8:58619158-58618878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):218, 80

               
               
               Conread position:131-446
               
               
               Cow position:chr8:36505076-36505408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:132-448
               
               
               Cow position:chr8:58520016-58520323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:133-447
               
               
               Cow position:chr8:18017226-18017547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:134-444
               
               
               Cow position:chr8:53383116-53383423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):22, 153

               
               
               Conread position:134-448
               
               
               Cow position:chr8:45781955-45781636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:138-448
               
               
               Cow position:chr8:11606052-11606356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:141-446
               
               
               Cow position:chr8:41914790-41914499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:141-448
               
               
               Cow position:chr8:24952055-24952378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):60, 134

               
               
               Conread position:142-440
               
               
               Cow position:chr8:7149964-7149672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:142-446
               
               
               Cow position:chr8:51578989-51579293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:144-439
               
               
               Cow position:chr8:21077324-21077607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):210, 8

               
               
               Conread position:145-431
               
               
               Cow position:chr8:4940583-4940297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:146-441
               
               
               Cow position:chr8:5485154-5484846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:146-445
               
               
               Cow position:chr8:10802445-10802137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:149-448
               
               
               Cow position:chr8:8324135-8323840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):9, 115

               
               
               Conread position:150-440
               
               
               Cow position:chr8:37571979-37571682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:156-438
               
               
               Cow position:chr8:23026436-23026715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):31, 147

               
               
               Conread position:160-448
               
               
               Cow position:chr8:20306719-20307009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):8, 115

               
               
               Conread position:161-444
               
               
               Cow position:chr8:53485447-53485725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 125

               
               
               Conread position:162-439
               
               
               Cow position:chr8:21206625-21206903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 49

               
               
               Conread position:162-448
               
               
               Cow position:chr8:3446337-3446067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):139, 25

               
               
               Conread position:162-448
               
               
               Cow position:chr8:58417435-58417719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:163-447
               
               
               Cow position:chr8:51661857-51661572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):49, 62

               
               
               Conread position:163-448
               
               
               Cow position:chr8:11078613-11078899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:163-448
               
               
               Cow position:chr8:36375769-36375486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:164-445
               
               
               Cow position:chr8:24364193-24363913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:165-428
               
               
               Cow position:chr8:60488883-60488613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:165-446
               
               
               Cow position:chr8:14947557-14947268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:165-448
               
               
               Cow position:chr8:4821480-4821198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):97, 92

               
               
               Conread position:165-448
               
               
               Cow position:chr8:31253555-31253843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:165-448
               
               
               Cow position:chr8:43191280-43191000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 95

               
               
               Conread position:165-448
               
               
               Cow position:chr8:47461609-47461889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:165-448
               
               
               Cow position:chr8:53429518-53429805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:166-346
               
               
               Cow position:chr8:39321071-39321242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 94

               
               
               Conread position:166-431
               
               
               Cow position:chr8:21827002-21826735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:166-442
               
               
               Cow position:chr8:844190-843935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:166-445
               
               
               Cow position:chr8:51444253-51443967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:166-445
               
               
               Cow position:chr8:56581453-56581180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:166-446
               
               
               Cow position:chr8:25455152-25455434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:166-447
               
               
               Cow position:chr8:3704368-3704652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:166-447
               
               
               Cow position:chr8:55360311-55360593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:166-448
               
               
               Cow position:chr8:642811-642546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:166-448
               
               
               Cow position:chr8:6233152-6232866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:166-448
               
               
               Cow position:chr8:20836873-20837154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:166-448
               
               
               Cow position:chr8:23179800-23179511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 53

               
               
               Conread position:166-448
               
               
               Cow position:chr8:24390449-24390167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:166-448
               
               
               Cow position:chr8:24471393-24471682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:166-448
               
               
               Cow position:chr8:30245079-30244803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:166-448
               
               
               Cow position:chr8:45245268-45245001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:168-448
               
               
               Cow position:chr8:36398168-36397888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:171-447
               
               
               Cow position:chr8:22755775-22756050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:172-448
               
               
               Cow position:chr8:9517429-9517144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:172-448
               
               
               Cow position:chr8:17180274-17180004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:172-448
               
               
               Cow position:chr8:35555817-35555522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):32, 279

               
               
               Conread position:172-448
               
               
               Cow position:chr8:38780462-38780740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:172-448
               
               
               Cow position:chr8:45493633-45493909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 96

               
               
               Conread position:172-448
               
               
               Cow position:chr8:48437649-48437371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:173-410
               
               
               Cow position:chr8:55716508-55716742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:173-448
               
               
               Cow position:chr8:25591571-25591849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):26, 155

               
               
               Conread position:173-448
               
               
               Cow position:chr8:51318724-51319002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:175-448
               
               
               Cow position:chr8:28412857-28412583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:176-448
               
               
               Cow position:chr8:1023716-1023994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 149

               
               
               Conread position:176-448
               
               
               Cow position:chr8:60454951-60455218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:178-407
               
               
               Cow position:chr8:28229714-28229474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 159

               
               
               Conread position:178-443
               
               
               Cow position:chr8:20384549-20384805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:179-443
               
               
               Cow position:chr8:20158001-20157735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):139, 81

               
               
               Conread position:181-448
               
               
               Cow position:chr8:9681638-9681381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:182-431
               
               
               Cow position:chr8:1327200-1327445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:183-448
               
               
               Cow position:chr8:32295976-32295698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 263

               
               
               Conread position:186-448
               
               
               Cow position:chr8:10297973-10297707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:187-431
               
               
               Cow position:chr8:54305849-54306093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:187-447
               
               
               Cow position:chr8:53558836-53558577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:190-448
               
               
               Cow position:chr8:20103001-20102745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 70

               
               
               Conread position:192-411
               
               
               Cow position:chr8:54031649-54031868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):5, 75

               
               
               Conread position:195-441
               
               
               Cow position:chr8:36464981-36465229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 50

               
               
               Conread position:195-445
               
               
               Cow position:chr8:39555752-39556010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:195-446
               
               
               Cow position:chr8:50311072-50310823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:195-448
               
               
               Cow position:chr8:669790-669535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:195-448
               
               
               Cow position:chr8:5225261-5225011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):106, 88

               
               
               Conread position:195-448
               
               
               Cow position:chr8:11278339-11278075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:195-448
               
               
               Cow position:chr8:20926861-20926601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:195-448
               
               
               Cow position:chr8:35504460-35504199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:200-448
               
               
               Cow position:chr8:45690120-45689869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):62, 53

               
               
               Conread position:201-448
               
               
               Cow position:chr8:42145992-42145741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):100, 82

               
               
               Conread position:203-444
               
               
               Cow position:chr8:37147903-37148148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:205-446
               
               
               Cow position:chr8:31297054-31297294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:208-448
               
               
               Cow position:chr8:24329058-24328825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:222-442
               
               
               Cow position:chr8:39544577-39544807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 216

               
               
               Conread position:228-445
               
               
               Cow position:chr8:634122-633905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:228-447
               
               
               Cow position:chr8:26304593-26304362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:230-439
               
               
               Cow position:chr8:36823391-36823185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:230-448
               
               
               Cow position:chr8:4500298-4500522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:231-448
               
               
               Cow position:chr8:50315354-50315149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:232-442
               
               
               Cow position:chr8:61128893-61128673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:233-446
               
               
               Cow position:chr8:30893186-30892978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:234-448
               
               
               Cow position:chr8:33125312-33125528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:235-448
               
               
               Cow position:chr8:19011974-19011765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:236-400
               
               
               Cow position:chr8:29029470-29029297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:237-448
               
               
               Cow position:chr8:47284246-47284040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:239-448
               
               
               Cow position:chr8:3922911-3922686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 183

               
               
               Conread position:239-448
               
               
               Cow position:chr8:5893763-5893974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 36

               
               
               Conread position:244-431
               
               
               Cow position:chr8:3655418-3655604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:244-448
               
               
               Cow position:chr8:21083470-21083261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:265-448
               
               
               Cow position:chr8:5450762-5450570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:266-448
               
               
               Cow position:chr8:586615-586800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:275-446
               
               
               Cow position:chr8:23586101-23585923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):29, 165

               
               
               Conread position:275-448
               
               
               Cow position:chr8:935562-935735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:275-448
               
               
               Cow position:chr8:11135403-11135232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:275-448
               
               
               Cow position:chr8:37347601-37347425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:287-448
               
               
               Cow position:chr8:5515578-5515740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:287-448
               
               
               Cow position:chr8:16413943-16413780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:287-448
               
               
               Cow position:chr8:25388009-25388170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:287-448
               
               
               Cow position:chr8:51480963-51480801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:288-448
               
               
               Cow position:chr8:37334040-37334202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:291-448
               
               
               Cow position:chr8:1936717-1936878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:294-448
               
               
               Cow position:chr8:20657496-20657332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 149

               
               
               Conread position:300-431
               
               
               Cow position:chr8:55719448-55719312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:300-448
               
               
               Cow position:chr8:48422697-48422846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:302-447
               
               
               Cow position:chr8:43227855-43228002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:306-448
               
               
               Cow position:chr8:19204558-19204416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:308-448
               
               
               Cow position:chr8:13723298-13723439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:312-448
               
               
               Cow position:chr8:55095774-55095911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:1-429
               
               
               Cow position:chr9:35305661-35306090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:1-448
               
               
               Cow position:chr9:24997076-24997509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:3-316
               
               
               Cow position:chr9:31777230-31777551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-448
               
               
               Cow position:chr9:30477356-30477765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:7-428
               
               
               Cow position:chr9:34689165-34689570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):192, 142

               
               
               Conread position:7-448
               
               
               Cow position:chr9:41789717-41789294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 129

               
               
               Conread position:8-440
               
               
               Cow position:chr9:25958875-25958441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 233

               
               
               Conread position:8-448
               
               
               Cow position:chr9:15215228-15215677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 29

               
               
               Conread position:11-448
               
               
               Cow position:chr9:30138560-30138145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 38

               
               
               Conread position:14-448
               
               
               Cow position:chr9:42445561-42445973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 11

               
               
               Conread position:19-420
               
               
               Cow position:chr9:40542557-40542159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 112

               
               
               Conread position:70-429
               
               
               Cow position:chr9:44408431-44408070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):63, 51

               
               
               Conread position:70-448
               
               
               Cow position:chr9:41514000-41513634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:74-448
               
               
               Cow position:chr9:5836552-5836164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:92-448
               
               
               Cow position:chr9:15805552-15805913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:100-444
               
               
               Cow position:chr9:28726364-28726710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:108-447
               
               
               Cow position:chr9:49765008-49764668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:124-445
               
               
               Cow position:chr9:35850238-35849917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 140

               
               
               Conread position:130-448
               
               
               Cow position:chr9:9416076-9416386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:131-448
               
               
               Cow position:chr9:33940936-33940615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 138

               
               
               Conread position:131-448
               
               
               Cow position:chr9:43871303-43870985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:132-317
               
               
               Cow position:chr9:24886298-24886478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:132-446
               
               
               Cow position:chr9:55074811-55075120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 20

               
               
               Conread position:138-429
               
               
               Cow position:chr9:64559569-64559855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:140-442
               
               
               Cow position:chr9:34000296-34000604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:142-448
               
               
               Cow position:chr9:9461337-9461647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:144-448
               
               
               Cow position:chr9:18162840-18163149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:148-447
               
               
               Cow position:chr9:6089408-6089099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:149-448
               
               
               Cow position:chr9:54528828-54528522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:155-445
               
               
               Cow position:chr9:23028097-23027817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):147, 45

               
               
               Conread position:159-447
               
               
               Cow position:chr9:13221596-13221881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:160-448
               
               
               Cow position:chr9:29034736-29035026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:161-448
               
               
               Cow position:chr9:41680033-41679757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):140, 85

               
               
               Conread position:162-447
               
               
               Cow position:chr9:11319345-11319623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:163-396
               
               
               Cow position:chr9:48343898-48343663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 115

               
               
               Conread position:163-427
               
               
               Cow position:chr9:26057155-26057411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:163-431
               
               
               Cow position:chr9:32812643-32812375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:163-445
               
               
               Cow position:chr9:53602709-53602440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:163-445
               
               
               Cow position:chr9:64516800-64517088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 64

               
               
               Conread position:163-448
               
               
               Cow position:chr9:1951973-1952260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 105

               
               
               Conread position:163-448
               
               
               Cow position:chr9:5510021-5509734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:163-448
               
               
               Cow position:chr9:8998652-8998359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:163-448
               
               
               Cow position:chr9:46316491-46316773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:165-446
               
               
               Cow position:chr9:33218657-33218942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:165-447
               
               
               Cow position:chr9:50080751-50081029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:165-448
               
               
               Cow position:chr9:3220414-3220146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):165, 30

               
               
               Conread position:165-448
               
               
               Cow position:chr9:33681973-33681684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):97, 36

               
               
               Conread position:165-448
               
               
               Cow position:chr9:38344190-38343897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:165-448
               
               
               Cow position:chr9:48106824-48107106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:165-448
               
               
               Cow position:chr9:54716331-54716597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):165, 27

               
               
               Conread position:165-448
               
               
               Cow position:chr9:55084002-55084294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:166-394
               
               
               Cow position:chr9:24726384-24726612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:166-401
               
               
               Cow position:chr9:9491083-9490849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):135, 20

               
               
               Conread position:166-402
               
               
               Cow position:chr9:5319923-5319689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:166-426
               
               
               Cow position:chr9:47954931-47955194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:166-440
               
               
               Cow position:chr9:1520435-1520719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:166-441
               
               
               Cow position:chr9:2718164-2718445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:166-446
               
               
               Cow position:chr9:5327545-5327270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:166-447
               
               
               Cow position:chr9:35375715-35375436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):164, 35

               
               
               Conread position:166-447
               
               
               Cow position:chr9:42498123-42497839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:166-448
               
               
               Cow position:chr9:4646039-4646315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:166-448
               
               
               Cow position:chr9:5763336-5763623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:166-448
               
               
               Cow position:chr9:6933778-6934064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:166-448
               
               
               Cow position:chr9:7410076-7409776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:166-448
               
               
               Cow position:chr9:10308713-10308991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:166-448
               
               
               Cow position:chr9:20406930-20406654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:166-448
               
               
               Cow position:chr9:20848230-20847939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr9:22696510-22696232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):87, 95

               
               
               Conread position:166-448
               
               
               Cow position:chr9:26404083-26403795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 200

               
               
               Conread position:166-448
               
               
               Cow position:chr9:32676976-32676687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:166-448
               
               
               Cow position:chr9:52407464-52407174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:166-448
               
               
               Cow position:chr9:61997302-61997588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 94

               
               
               Conread position:167-423
               
               
               Cow position:chr9:36067198-36066939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):120, 93

               
               
               Conread position:167-447
               
               
               Cow position:chr9:20321820-20322089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:167-448
               
               
               Cow position:chr9:35167461-35167186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:168-447
               
               
               Cow position:chr9:20738994-20738707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:168-448
               
               
               Cow position:chr9:26391056-26390779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:172-392
               
               
               Cow position:chr9:5393338-5393114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):90, 154

               
               
               Conread position:172-398
               
               
               Cow position:chr9:52001295-52001064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:172-403
               
               
               Cow position:chr9:33100854-33101084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:172-448
               
               
               Cow position:chr9:5501137-5500863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:172-448
               
               
               Cow position:chr9:22318626-22318360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:172-448
               
               
               Cow position:chr9:54681789-54681517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 96

               
               
               Conread position:173-447
               
               
               Cow position:chr9:3387978-3387700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:176-442
               
               
               Cow position:chr9:57951045-57951305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:177-447
               
               
               Cow position:chr9:26086350-26086067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 269

               
               
               Conread position:177-448
               
               
               Cow position:chr9:22443329-22443617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):88, 273

               
               
               Conread position:178-391
               
               
               Cow position:chr9:26577578-26577788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:178-448
               
               
               Cow position:chr9:21888451-21888178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:178-448
               
               
               Cow position:chr9:41283310-41283025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:179-414
               
               
               Cow position:chr9:16218362-16218606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 148

               
               
               Conread position:179-445
               
               
               Cow position:chr9:1751616-1751351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:179-445
               
               
               Cow position:chr9:9443317-9443591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:179-446
               
               
               Cow position:chr9:6225166-6225443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:180-440
               
               
               Cow position:chr9:18002669-18002936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:180-447
               
               
               Cow position:chr9:17929053-17928768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:180-448
               
               
               Cow position:chr9:28354813-28354528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 121

               
               
               Conread position:180-448
               
               
               Cow position:chr9:55287611-55287882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):21, 148

               
               
               Conread position:184-436
               
               
               Cow position:chr9:42998195-42998451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:185-448
               
               
               Cow position:chr9:8534407-8534680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 258

               
               
               Conread position:185-448
               
               
               Cow position:chr9:20961013-20961270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:185-448
               
               
               Cow position:chr9:34901842-34902097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:186-429
               
               
               Cow position:chr9:32732411-32732663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:189-448
               
               
               Cow position:chr9:1950190-1949927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:192-447
               
               
               Cow position:chr9:63194875-63194618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 243

               
               
               Conread position:194-448
               
               
               Cow position:chr9:39577999-39577742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:194-448
               
               
               Cow position:chr9:56011764-56011509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:195-406
               
               
               Cow position:chr9:41995978-41995760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):71, 130

               
               
               Conread position:196-448
               
               
               Cow position:chr9:7363290-7363034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):66, 243

               
               
               Conread position:197-448
               
               
               Cow position:chr9:38846087-38846327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):155, 63

               
               
               Conread position:197-448
               
               
               Cow position:chr9:55890072-55889821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):7, 163

               
               
               Conread position:199-390
               
               
               Cow position:chr9:38875314-38875509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):69, 123

               
               
               Conread position:201-445
               
               
               Cow position:chr9:58979659-58979410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:203-448
               
               
               Cow position:chr9:25922079-25921833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:209-448
               
               
               Cow position:chr9:18216850-18217089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 115

               
               
               Conread position:214-448
               
               
               Cow position:chr9:6840256-6840003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):48, 238

               
               
               Conread position:216-429
               
               
               Cow position:chr9:51005130-51004922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:216-446
               
               
               Cow position:chr9:40604193-40603957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 220

               
               
               Conread position:216-447
               
               
               Cow position:chr9:50139524-50139296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 44

               
               
               Conread position:216-448
               
               
               Cow position:chr9:61544892-61544660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:228-444
               
               
               Cow position:chr9:33038227-33038450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:228-447
               
               
               Cow position:chr9:32711163-32710940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):20, 61

               
               
               Conread position:230-441
               
               
               Cow position:chr9:50667653-50667438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:232-442
               
               
               Cow position:chr9:1532105-1532311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:232-447
               
               
               Cow position:chr9:53211270-53211480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:233-431
               
               
               Cow position:chr9:58734601-58734394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:233-448
               
               
               Cow position:chr9:3371805-3371577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 180

               
               
               Conread position:234-448
               
               
               Cow position:chr9:11313282-11313500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 169

               
               
               Conread position:234-448
               
               
               Cow position:chr9:29092029-29091802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 212

               
               
               Conread position:236-442
               
               
               Cow position:chr9:1973165-1972958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:239-448
               
               
               Cow position:chr9:17799850-17799636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:250-448
               
               
               Cow position:chr9:8920207-8920000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:263-448
               
               
               Cow position:chr9:31638445-31638633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:274-447
               
               
               Cow position:chr9:12225794-12225967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:277-443
               
               
               Cow position:chr9:51720719-51720885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:277-445
               
               
               Cow position:chr9:4323975-4324144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:277-446
               
               
               Cow position:chr9:3774350-3774173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 164

               
               
               Conread position:279-447
               
               
               Cow position:chr9:8901043-8901216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:279-448
               
               
               Cow position:chr9:11168911-11168740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:287-448
               
               
               Cow position:chr9:40215416-40215253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:287-448
               
               
               Cow position:chr9:50543251-50543416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 14

               
               
               Conread position:291-447
               
               
               Cow position:chr9:26477385-26477227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:300-448
               
               
               Cow position:chr9:6851909-6852061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:300-448
               
               
               Cow position:chr9:11303919-11304069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:300-448
               
               
               Cow position:chr9:31270938-31270790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:312-448
               
               
               Cow position:chr9:9090215-9090355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:316-448
               
               
               Cow position:chr9:33697173-33697038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:317-448
               
               
               Cow position:chr9:10819689-10819820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:325-443
               
               
               Cow position:chr9:1850980-1851099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:1-447
               
               
               Cow position:chrX:9854907-9855343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 159

               
               
               Conread position:3-448
               
               
               Cow position:chrX:16416097-16416555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 219

               
               
               Conread position:3-448
               
               
               Cow position:chrX:27679992-27680444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:4-396
               
               
               Cow position:chrX:42282035-42282422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 101

               
               
               Conread position:4-445
               
               
               Cow position:chrX:38840488-38840927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 158

               
               
               Conread position:4-447
               
               
               Cow position:chrX:17631198-17630758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 146

               
               
               Conread position:7-446
               
               
               Cow position:chrX:10831877-10831446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 137

               
               
               Conread position:7-448
               
               
               Cow position:chrX:39558732-39558302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 142

               
               
               Conread position:7-448
               
               
               Cow position:chrX:40035835-40035396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:7-448
               
               
               Cow position:chrX:41198721-41199154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 121

               
               
               Conread position:8-448
               
               
               Cow position:chrX:11589986-11589542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:8-448
               
               
               Cow position:chrX:34663224-34662800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:11-445
               
               
               Cow position:chrX:44961352-44961794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 285

               
               
               Conread position:11-448
               
               
               Cow position:chrX:38549048-38549491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 71

               
               
               Conread position:12-448
               
               
               Cow position:chrX:32419828-32420258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:12-448
               
               
               Cow position:chrX:37489357-37489765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:18-448
               
               
               Cow position:chrX:1514781-1514366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 149

               
               
               Conread position:25-410
               
               
               Cow position:chrX:35284236-35284628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:25-445
               
               
               Cow position:chrX:32623218-32623614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):176, 92

               
               
               Conread position:25-448
               
               
               Cow position:chrX:42492877-42492477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 115

               
               
               Conread position:30-448
               
               
               Cow position:chrX:11455411-11454996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):274, 100

               
               
               Conread position:57-447
               
               
               Cow position:chrX:23514354-23513970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 66

               
               
               Conread position:70-369
               
               
               Cow position:chrX:2206887-2206583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:87-444
               
               
               Cow position:chrX:37119280-37119638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 167

               
               
               Conread position:100-448
               
               
               Cow position:chrX:44396709-44397061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):29, 226

               
               
               Conread position:104-448
               
               
               Cow position:chrX:41167263-41166916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 62

               
               
               Conread position:106-448
               
               
               Cow position:chrX:20751970-20752301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 17

               
               
               Conread position:123-391
               
               
               Cow position:chrX:2029109-2029381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:130-445
               
               
               Cow position:chrX:11718056-11717740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:131-447
               
               
               Cow position:chrX:21672278-21672599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 194

               
               
               Conread position:132-446
               
               
               Cow position:chrX:27394286-27393982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 129

               
               
               Conread position:132-447
               
               
               Cow position:chrX:10412254-10411941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:132-448
               
               
               Cow position:chrX:26625949-26625625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 195

               
               
               Conread position:133-448
               
               
               Cow position:chrX:17662867-17662549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:134-279
               
               
               Cow position:chrX:616671-616530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:134-437
               
               
               Cow position:chrX:30833107-30832817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:134-448
               
               
               Cow position:chrX:43567669-43567965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):67, 127

               
               
               Conread position:136-440
               
               
               Cow position:chrX:41743645-41743952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:140-443
               
               
               Cow position:chrX:30543542-30543243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:143-448
               
               
               Cow position:chrX:15814839-15815130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:145-405
               
               
               Cow position:chrX:46315643-46315374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:146-448
               
               
               Cow position:chrX:43527243-43527554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 142

               
               
               Conread position:149-448
               
               
               Cow position:chrX:16762515-16762817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:151-401
               
               
               Cow position:chrX:877274-877035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:152-428
               
               
               Cow position:chrX:34441703-34441422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:156-439
               
               
               Cow position:chrX:45113380-45113654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:161-446
               
               
               Cow position:chrX:40481114-40480825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:163-436
               
               
               Cow position:chrX:38439232-38439515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:163-448
               
               
               Cow position:chrX:878612-878334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):99, 65

               
               
               Conread position:163-448
               
               
               Cow position:chrX:15007392-15007103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:163-448
               
               
               Cow position:chrX:27432160-27431872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:163-448
               
               
               Cow position:chrX:42994373-42994659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:163-448
               
               
               Cow position:chrX:48243693-48243420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:164-442
               
               
               Cow position:chrX:12115799-12116087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 12

               
               
               Conread position:164-448
               
               
               Cow position:chrX:37843478-37843765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:165-437
               
               
               Cow position:chrX:14973971-14973706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:165-445
               
               
               Cow position:chrX:38936462-38936743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:165-445
               
               
               Cow position:chrX:40647739-40648029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 163

               
               
               Conread position:165-446
               
               
               Cow position:chrX:8925464-8925743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 98

               
               
               Conread position:165-446
               
               
               Cow position:chrX:41238602-41238310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:165-448
               
               
               Cow position:chrX:917608-917322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:165-448
               
               
               Cow position:chrX:18695160-18694881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:165-448
               
               
               Cow position:chrX:28845607-28845879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 83

               
               
               Conread position:165-448
               
               
               Cow position:chrX:34502681-34502966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:166-396
               
               
               Cow position:chrX:35041981-35042219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:166-402
               
               
               Cow position:chrX:38227328-38227093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:166-441
               
               
               Cow position:chrX:3653525-3653798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:166-442
               
               
               Cow position:chrX:7718615-7718889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 140

               
               
               Conread position:166-446
               
               
               Cow position:chrX:34990803-34991080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:166-447
               
               
               Cow position:chrX:19188698-19188976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 127

               
               
               Conread position:166-447
               
               
               Cow position:chrX:26492764-26493051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:166-447
               
               
               Cow position:chrX:34401759-34402045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:166-447
               
               
               Cow position:chrX:44192681-44192402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:166-448
               
               
               Cow position:chrX:161190-161458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:166-448
               
               
               Cow position:chrX:1616289-1615995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):17, 161

               
               
               Conread position:166-448
               
               
               Cow position:chrX:5872075-5872363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 209

               
               
               Conread position:166-448
               
               
               Cow position:chrX:8797010-8797302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 159

               
               
               Conread position:166-448
               
               
               Cow position:chrX:9360645-9360933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:166-448
               
               
               Cow position:chrX:15147424-15147147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 69

               
               
               Conread position:166-448
               
               
               Cow position:chrX:20340129-20339846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:166-448
               
               
               Cow position:chrX:27446450-27446732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):35, 241

               
               
               Conread position:166-448
               
               
               Cow position:chrX:28847117-28846847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:166-448
               
               
               Cow position:chrX:29289338-29289624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:166-448
               
               
               Cow position:chrX:34238483-34238765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:166-448
               
               
               Cow position:chrX:34754430-34754146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:166-448
               
               
               Cow position:chrX:36778168-36778454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):30, 151

               
               
               Conread position:166-448
               
               
               Cow position:chrX:45598842-45598557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:167-447
               
               
               Cow position:chrX:7721748-7722037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:167-448
               
               
               Cow position:chrX:6690485-6690214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:167-448
               
               
               Cow position:chrX:42874741-42875029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 273

               
               
               Conread position:168-448
               
               
               Cow position:chrX:4044086-4043818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 92

               
               
               Conread position:168-448
               
               
               Cow position:chrX:12249569-12249857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:170-445
               
               
               Cow position:chrX:28134112-28134383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):117, 90

               
               
               Conread position:170-448
               
               
               Cow position:chrX:33639737-33640021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:172-438
               
               
               Cow position:chrX:38072003-38071728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 155

               
               
               Conread position:172-440
               
               
               Cow position:chrX:23497895-23497628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:172-447
               
               
               Cow position:chrX:12309621-12309341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:172-448
               
               
               Cow position:chrX:5638401-5638123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:172-448
               
               
               Cow position:chrX:6278738-6278452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):23, 259

               
               
               Conread position:172-448
               
               
               Cow position:chrX:7351067-7351346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:172-448
               
               
               Cow position:chrX:25816128-25815855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:172-448
               
               
               Cow position:chrX:46532741-46532449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):90, 277

               
               
               Conread position:172-448
               
               
               Cow position:chrX:47481566-47481846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):5, 232

               
               
               Conread position:173-444
               
               
               Cow position:chrX:14900952-14900688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:173-445
               
               
               Cow position:chrX:15996923-15997206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 135

               
               
               Conread position:173-448
               
               
               Cow position:chrX:5017639-5017365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:173-448
               
               
               Cow position:chrX:5900226-5900512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 239

               
               
               Conread position:173-448
               
               
               Cow position:chrX:41122841-41123107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):128, 101

               
               
               Conread position:176-431
               
               
               Cow position:chrX:37048809-37048551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:176-444
               
               
               Cow position:chrX:45436981-45437255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:176-448
               
               
               Cow position:chrX:16790065-16789810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):125, 84

               
               
               Conread position:176-448
               
               
               Cow position:chrX:34565069-34565332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:176-448
               
               
               Cow position:chrX:42247412-42247136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:177-448
               
               
               Cow position:chrX:35681118-35681388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:177-448
               
               
               Cow position:chrX:44873778-44873511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:177-448
               
               
               Cow position:chrX:47191626-47191361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:178-448
               
               
               Cow position:chrX:13382098-13382377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 148

               
               
               Conread position:181-448
               
               
               Cow position:chrX:6488363-6488625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:182-432
               
               
               Cow position:chrX:1503117-1503370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):84, 102

               
               
               Conread position:182-448
               
               
               Cow position:chrX:46073044-46072771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:183-448
               
               
               Cow position:chrX:11633457-11633728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:184-448
               
               
               Cow position:chrX:29602053-29601782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:187-448
               
               
               Cow position:chrX:29120841-29121093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:188-448
               
               
               Cow position:chrX:40567383-40567643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 170

               
               
               Conread position:196-431
               
               
               Cow position:chrX:26285772-26286011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:196-448
               
               
               Cow position:chrX:45993013-45993274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:197-448
               
               
               Cow position:chrX:46587611-46587868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:200-431
               
               
               Cow position:chrX:17908487-17908258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 73

               
               
               Conread position:202-438
               
               
               Cow position:chrX:1499468-1499701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 58

               
               
               Conread position:203-448
               
               
               Cow position:chrX:43780053-43779801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:206-448
               
               
               Cow position:chrX:36961438-36961687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 207

               
               
               Conread position:211-447
               
               
               Cow position:chrX:10394288-10394059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:216-445
               
               
               Cow position:chrX:23785466-23785690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 140

               
               
               Conread position:216-447
               
               
               Cow position:chrX:42235721-42235479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:216-448
               
               
               Cow position:chrX:43730402-43730178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):114, 44

               
               
               Conread position:217-448
               
               
               Cow position:chrX:48035241-48035471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:225-447
               
               
               Cow position:chrX:4279293-4279073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:228-445
               
               
               Cow position:chrX:29563546-29563326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 57

               
               
               Conread position:228-446
               
               
               Cow position:chrX:47186496-47186280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:230-444
               
               
               Cow position:chrX:22387421-22387204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:231-431
               
               
               Cow position:chrX:31252245-31252447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:232-396
               
               
               Cow position:chrX:37955666-37955825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:232-448
               
               
               Cow position:chrX:32820857-32821075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:235-438
               
               
               Cow position:chrX:14003813-14003610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:238-446
               
               
               Cow position:chrX:41992207-41992002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:240-448
               
               
               Cow position:chrX:41068564-41068771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:245-448
               
               
               Cow position:chrX:36355957-36356158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:246-448
               
               
               Cow position:chrX:27227966-27228172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:249-438
               
               
               Cow position:chrX:35969237-35969050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:257-448
               
               
               Cow position:chrX:38728590-38728780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 64

               
               
               Conread position:262-448
               
               
               Cow position:chrX:29680404-29680215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:273-448
               
               
               Cow position:chrX:7710674-7710493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 168

               
               
               Conread position:275-446
               
               
               Cow position:chrX:45875262-45875436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 161

               
               
               Conread position:275-448
               
               
               Cow position:chrX:11614570-11614744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:279-446
               
               
               Cow position:chrX:41027032-41027203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:279-448
               
               
               Cow position:chrX:19003175-19003343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:284-448
               
               
               Cow position:chrX:27119579-27119743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:287-448
               
               
               Cow position:chrX:5679683-5679523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:287-448
               
               
               Cow position:chrX:9365792-9365630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:290-416
               
               
               Cow position:chrX:32747569-32747698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:291-448
               
               
               Cow position:chrX:38654543-38654384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:293-448
               
               
               Cow position:chrX:29194123-29194278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:293-448
               
               
               Cow position:chrX:29488112-29487962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:293-448
               
               
               Cow position:chrX:47209232-47209392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 31

               
               
               Conread position:300-445
               
               
               Cow position:chrX:35848458-35848607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:301-446
               
               
               Cow position:chrX:16348672-16348520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:307-448
               
               
               Cow position:chrX:20168461-20168604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 13