Non-Coding RNA Search

Cow genome map


           Conread name:
           Ova1-OVRM10217E10
        

               Conread position:
               1-233
               

               Cow position:
               chr1:42174517-42174753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               77, 154
               

               Conread position:
               1-299
               

               Cow position:
               chr1:34892630-34892339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               117, 72
               

               Conread position:
               1-303
               

               Cow position:
               chr1:54162733-54163041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 153
               

               Conread position:
               1-312
               

               Cow position:
               chr1:28284647-28284334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               77, 156
               

               Conread position:
               1-327
               

               Cow position:
               chr1:86325534-86325866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               69, 154
               

               Conread position:
               1-340
               

               Cow position:
               chr1:64479903-64480245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 277
               

               Conread position:
               1-348
               

               Cow position:
               chr1:64099206-64099539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 81
               

               Conread position:
               1-358
               

               Cow position:
               chr1:59910425-59910064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               78, 152
               

               Conread position:
               1-362
               

               Cow position:
               chr1:1825853-1825489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               68, 196
               

               Conread position:
               1-421
               

               Cow position:
               chr1:17291567-17291989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               29, 159
               

               Conread position:
               1-424
               

               Cow position:
               chr1:18223797-18224234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 160
               

               Conread position:
               1-437
               

               Cow position:
               chr1:22516616-22516185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 136
               

               Conread position:
               1-438
               

               Cow position:
               chr1:52206751-52206326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 145
               

               Conread position:
               1-443
               

               Cow position:
               chr1:72181876-72181468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 40
               

               Conread position:
               1-444
               

               Cow position:
               chr1:23624234-23623779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 88
               

               Conread position:
               2-426
               

               Cow position:
               chr1:30041807-30041375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 317
               

               Conread position:
               3-307
               

               Cow position:
               chr1:25886005-25886310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 64
               

               Conread position:
               3-443
               

               Cow position:
               chr1:92048892-92048459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               308
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               161, 68
               

               Conread position:
               11-311
               

               Cow position:
               chr1:29648345-29648643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               202
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               60, 138
               

               Conread position:
               16-438
               

               Cow position:
               chr1:31377883-31378292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 54
               

               Conread position:
               18-371
               

               Cow position:
               chr1:11323428-11323785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               60, 113
               

               Conread position:
               32-442
               

               Cow position:
               chr1:82406509-82406928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 126
               

               Conread position:
               36-444
               

               Cow position:
               chr1:60120458-60120056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 111
               

               Conread position:
               57-353
               

               Cow position:
               chr1:635203-634908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               21, 50
               

               Conread position:
               70-443
               

               Cow position:
               chr1:22729045-22728676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 13
               

               Conread position:
               71-428
               

               Cow position:
               chr1:55202632-55202989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               130, 17
               

               Conread position:
               76-310
               

               Cow position:
               chr1:64189485-64189264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               126, 7
               

               Conread position:
               76-367
               

               Cow position:
               chr1:61176175-61175886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 82
               

               Conread position:
               76-432
               

               Cow position:
               chr1:10719495-10719850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 20
               

               Conread position:
               78-330
               

               Cow position:
               chr1:45535692-45535444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               78-351
               

               Cow position:
               chr1:32341221-32341488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               207
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               78-420
               

               Cow position:
               chr1:96478684-96478333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               95, 76
               

               Conread position:
               78-432
               

               Cow position:
               chr1:91816786-91817131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 26
               

               Conread position:
               79-330
               

               Cow position:
               chr1:29975615-29975855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               23, 70
               

               Conread position:
               79-428
               

               Cow position:
               chr1:6794937-6795288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 252
               

               Conread position:
               80-322
               

               Cow position:
               chr1:28567450-28567688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               121, 7
               

               Conread position:
               80-443
               

               Cow position:
               chr1:84255750-84255385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 69
               

               Conread position:
               81-437
               

               Cow position:
               chr1:7657329-7657684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 66
               

               Conread position:
               82-336
               

               Cow position:
               chr1:90423101-90423349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               120, 65
               

               Conread position:
               82-423
               

               Cow position:
               chr1:52774550-52774858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               119, 50
               

               Conread position:
               83-329
               

               Cow position:
               chr1:93110639-93110882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               11, 6
               

               Conread position:
               83-444
               

               Cow position:
               chr1:67821227-67821592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               10, 66
               

               Conread position:
               88-330
               

               Cow position:
               chr1:63905495-63905732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               186, 59
               

               Conread position:
               105-358
               

               Cow position:
               chr1:4385321-4385060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               97, 42
               

               Conread position:
               208-447
               

               Cow position:
               chr1:54640151-54639909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               66, 194
               

               Conread position:
               1-301
               

               Cow position:
               chr10:58937251-58937546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               77, 105
               

               Conread position:
               1-330
               

               Cow position:
               chr10:1351973-1351646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 131
               

               Conread position:
               1-397
               

               Cow position:
               chr10:22843727-22843334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 147
               

               Conread position:
               1-438
               

               Cow position:
               chr10:4994524-4994957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 95
               

               Conread position:
               1-443
               

               Cow position:
               chr10:57404892-57405332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 65
               

               Conread position:
               4-271
               

               Cow position:
               chr10:16669329-16669590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               74, 20
               

               Conread position:
               5-443
               

               Cow position:
               chr10:41637686-41637245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 112
               

               Conread position:
               11-290
               

               Cow position:
               chr10:45606394-45606676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               64, 81
               

               Conread position:
               34-324
               

               Cow position:
               chr10:49680046-49679762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               80, 38
               

               Conread position:
               73-314
               

               Cow position:
               chr10:23506529-23506758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               201, 74
               

               Conread position:
               75-443
               

               Cow position:
               chr10:15817833-15818196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 17
               

               Conread position:
               76-251
               

               Cow position:
               chr10:35778943-35779114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               126, 71
               

               Conread position:
               78-305
               

               Cow position:
               chr10:6490807-6491036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               8, 100
               

               Conread position:
               78-332
               

               Cow position:
               chr10:32066079-32065830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               99, 67
               

               Conread position:
               78-420
               

               Cow position:
               chr10:15618853-15619197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 14
               

               Conread position:
               80-443
               

               Cow position:
               chr10:10148608-10148226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               121, 9
               

               Conread position:
               81-443
               

               Cow position:
               chr10:21657377-21657021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 5
               

               Conread position:
               94-431
               

               Cow position:
               chr10:31466687-31466362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 63
               

               Conread position:
               104-443
               

               Cow position:
               chr10:51779107-51779449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 43
               

               Conread position:
               1-145
               

               Cow position:
               chr11:23738742-23738881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1-307
               

               Cow position:
               chr11:5221386-5221677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               226
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               108, 64
               

               Conread position:
               1-322
               

               Cow position:
               chr11:77756715-77757018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               95, 76
               

               Conread position:
               1-331
               

               Cow position:
               chr11:33103608-33103920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               101, 92
               

               Conread position:
               1-337
               

               Cow position:
               chr11:34023921-34023575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               71, 175
               

               Conread position:
               1-346
               

               Cow position:
               chr11:65159405-65159745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               242
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               77, 150
               

               Conread position:
               1-412
               

               Cow position:
               chr11:51177538-51177144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               288
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               52, 70
               

               Conread position:
               1-427
               

               Cow position:
               chr11:35251947-35252367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 119
               

               Conread position:
               1-443
               

               Cow position:
               chr11:39831179-39831593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 14
               

               Conread position:
               2-201
               

               Cow position:
               chr11:43831750-43831948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               76, 89
               

               Conread position:
               3-329
               

               Cow position:
               chr11:17192234-17192564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 41
               

               Conread position:
               3-419
               

               Cow position:
               chr11:77772643-77773054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               293
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               67, 128
               

               Conread position:
               3-428
               

               Cow position:
               chr11:80003069-80002655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               286
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               105, 67
               

               Conread position:
               3-442
               

               Cow position:
               chr11:23258593-23259006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               310
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               89, 68
               

               Conread position:
               10-438
               

               Cow position:
               chr11:25807722-25808147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 55
               

               Conread position:
               11-321
               

               Cow position:
               chr11:58313277-58312966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               217
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               50, 146
               

               Conread position:
               11-405
               

               Cow position:
               chr11:49216823-49216432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               269
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               142, 77
               

               Conread position:
               12-337
               

               Cow position:
               chr11:9213824-9214135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               36, 52
               

               Conread position:
               14-443
               

               Cow position:
               chr11:58614695-58614256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 139
               

               Conread position:
               32-330
               

               Cow position:
               chr11:1668687-1668391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               218
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               16, 24
               

               Conread position:
               36-234
               

               Cow position:
               chr11:7705640-7705449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               165, 49
               

               Conread position:
               63-443
               

               Cow position:
               chr11:16251264-16251654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 101
               

               Conread position:
               67-438
               

               Cow position:
               chr11:42792997-42793350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               260
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               9, 82
               

               Conread position:
               73-441
               

               Cow position:
               chr11:61846031-61846401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 47
               

               Conread position:
               75-357
               

               Cow position:
               chr11:10877202-10876932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               208
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               125, 7
               

               Conread position:
               78-442
               

               Cow position:
               chr11:6835496-6835147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               258
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               23, 72
               

               Conread position:
               79-330
               

               Cow position:
               chr11:14308600-14308355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               18, 70
               

               Conread position:
               80-419
               

               Cow position:
               chr11:59430198-59430511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               240, 14
               

               Conread position:
               80-443
               

               Cow position:
               chr11:952226-951876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               257
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               122, 10
               

               Conread position:
               86-331
               

               Cow position:
               chr11:77683122-77682895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               92-432
               

               Cow position:
               chr11:57047020-57047350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               11, 56
               

               Conread position:
               93-443
               

               Cow position:
               chr11:15285669-15286016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 51
               

               Conread position:
               1-316
               

               Cow position:
               chr12:10161936-10162244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 54
               

               Conread position:
               6-300
               

               Cow position:
               chr12:12982852-12983144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               71, 154
               

               Conread position:
               37-318
               

               Cow position:
               chr12:14523924-14523633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               49, 54
               

               Conread position:
               67-438
               

               Cow position:
               chr12:30170624-30170251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 83
               

               Conread position:
               69-285
               

               Cow position:
               chr12:27938864-27938656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               30, 14
               

               Conread position:
               70-323
               

               Cow position:
               chr12:20776975-20777225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               132, 20
               

               Conread position:
               76-318
               

               Cow position:
               chr12:6164083-6164320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               126, 7
               

               Conread position:
               79-424
               

               Cow position:
               chr12:541306-541644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               98, 50
               

               Conread position:
               82-370
               

               Cow position:
               chr12:9710272-9710550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               192, 12
               

               Conread position:
               83-438
               

               Cow position:
               chr12:17008141-17007788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               245
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               119, 64
               

               Conread position:
               85-336
               

               Cow position:
               chr12:30728301-30728551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               117, 7
               

               Conread position:
               1-199
               

               Cow position:
               chr13:46464886-46465087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               77, 142
               

               Conread position:
               1-241
               

               Cow position:
               chr13:12325183-12324940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               51, 157
               

               Conread position:
               1-325
               

               Cow position:
               chr13:47863783-47863454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 141
               

               Conread position:
               1-397
               

               Cow position:
               chr13:6498526-6498912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               279
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               69, 11
               

               Conread position:
               1-405
               

               Cow position:
               chr13:45497330-45496937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               70, 48
               

               Conread position:
               1-438
               

               Cow position:
               chr13:55406738-55406328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               304
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               80, 90
               

               Conread position:
               2-443
               

               Cow position:
               chr13:47591215-47590778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 63
               

               Conread position:
               3-324
               

               Cow position:
               chr13:22277256-22276927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 135
               

               Conread position:
               6-441
               

               Cow position:
               chr13:34334016-34333589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 152
               

               Conread position:
               10-438
               

               Cow position:
               chr13:1367951-1368370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 96
               

               Conread position:
               12-318
               

               Cow position:
               chr13:4604222-4604529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               49, 153
               

               Conread position:
               12-337
               

               Cow position:
               chr13:6621661-6621342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               86, 65
               

               Conread position:
               12-337
               

               Cow position:
               chr13:52251870-52251528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               45, 13
               

               Conread position:
               14-337
               

               Cow position:
               chr13:1839333-1839639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 62
               

               Conread position:
               34-322
               

               Cow position:
               chr13:46637172-46636889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               44, 124
               

               Conread position:
               59-330
               

               Cow position:
               chr13:56842900-56842628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               10, 32
               

               Conread position:
               70-299
               

               Cow position:
               chr13:18172337-18172559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               132, 9
               

               Conread position:
               73-314
               

               Cow position:
               chr13:24369581-24369819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               6, 18
               

               Conread position:
               77-411
               

               Cow position:
               chr13:37981740-37981421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               197, 15
               

               Conread position:
               77-428
               

               Cow position:
               chr13:46458626-46458984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 70
               

               Conread position:
               79-428
               

               Cow position:
               chr13:17613349-17613694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 72
               

               Conread position:
               82-438
               

               Cow position:
               chr13:6945376-6945731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 65
               

               Conread position:
               83-322
               

               Cow position:
               chr13:1959018-1959251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               8, 66
               

               Conread position:
               88-443
               

               Cow position:
               chr13:49804985-49805332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 59
               

               Conread position:
               1-225
               

               Cow position:
               chr14:15011487-15011256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               77, 155
               

               Conread position:
               1-330
               

               Cow position:
               chr14:3588463-3588145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               77, 33
               

               Conread position:
               1-332
               

               Cow position:
               chr14:46782418-46782085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               77, 49
               

               Conread position:
               1-441
               

               Cow position:
               chr14:27578814-27578367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 157
               

               Conread position:
               1-443
               

               Cow position:
               chr14:39807481-39807039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 11
               

               Conread position:
               2-284
               

               Cow position:
               chr14:28007588-28007870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               79, 106
               

               Conread position:
               2-370
               

               Cow position:
               chr14:44483081-44482711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 136
               

               Conread position:
               2-418
               

               Cow position:
               chr14:10156675-10157100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               302
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               53, 84
               

               Conread position:
               2-446
               

               Cow position:
               chr14:21864053-21863606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 71
               

               Conread position:
               4-314
               

               Cow position:
               chr14:14835158-14834835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 153
               

               Conread position:
               5-368
               

               Cow position:
               chr14:47043886-47043539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               257
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               73, 24
               

               Conread position:
               8-392
               

               Cow position:
               chr14:45018514-45018133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 263
               

               Conread position:
               11-307
               

               Cow position:
               chr14:3436974-3437275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               227
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               19, 150
               

               Conread position:
               11-337
               

               Cow position:
               chr14:35936508-35936204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               189, 48
               

               Conread position:
               11-355
               

               Cow position:
               chr14:25362331-25362679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 146
               

               Conread position:
               12-293
               

               Cow position:
               chr14:15514000-15514290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               5, 146
               

               Conread position:
               14-246
               

               Cow position:
               chr14:46546011-46545775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               43, 149
               

               Conread position:
               61-289
               

               Cow position:
               chr14:34777529-34777314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               139, 26
               

               Conread position:
               67-333
               

               Cow position:
               chr14:10078317-10078570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 83
               

               Conread position:
               68-318
               

               Cow position:
               chr14:18984841-18984608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               109, 20
               

               Conread position:
               74-299
               

               Cow position:
               chr14:25378437-25378214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               128, 73
               

               Conread position:
               78-334
               

               Cow position:
               chr14:33791251-33791501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               124, 8
               

               Conread position:
               78-443
               

               Cow position:
               chr14:26442280-26441915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 70
               

               Conread position:
               79-296
               

               Cow position:
               chr14:14221832-14222049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               81-301
               

               Cow position:
               chr14:31812902-31813121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               91, 12
               

               Conread position:
               81-310
               

               Cow position:
               chr14:9921120-9921335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               193, 7
               

               Conread position:
               82-272
               

               Cow position:
               chr14:1646127-1645940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               5, 69
               

               Conread position:
               82-378
               

               Cow position:
               chr14:31888637-31888354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               218
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               7, 66
               

               Conread position:
               83-437
               

               Cow position:
               chr14:9875461-9875801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               242
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               119, 7
               

               Conread position:
               88-334
               

               Cow position:
               chr14:30662058-30662299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               186, 66
               

               Conread position:
               91-384
               

               Cow position:
               chr14:41809581-41809288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               208
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               98, 68
               

               Conread position:
               94-397
               

               Cow position:
               chr14:36437407-36437107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               222
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               71, 63
               

               Conread position:
               96-443
               

               Cow position:
               chr14:50027300-50027630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               178, 55
               

               Conread position:
               1-225
               

               Cow position:
               chr15:27972331-27972563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               74, 156
               

               Conread position:
               1-301
               

               Cow position:
               chr15:31655853-31655543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               80, 24
               

               Conread position:
               1-312
               

               Cow position:
               chr15:10581133-10580824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               77, 155
               

               Conread position:
               1-321
               

               Cow position:
               chr15:36278299-36278634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               60, 65
               

               Conread position:
               1-328
               

               Cow position:
               chr15:28070523-28070839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               62, 140
               

               Conread position:
               1-330
               

               Cow position:
               chr15:21802144-21801817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               243
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               80, 135
               

               Conread position:
               1-336
               

               Cow position:
               chr15:44797553-44797886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 58
               

               Conread position:
               1-397
               

               Cow position:
               chr15:4623506-4623908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 54
               

               Conread position:
               1-417
               

               Cow position:
               chr15:40065667-40065257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 145
               

               Conread position:
               1-438
               

               Cow position:
               chr15:22713808-22713382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 33
               

               Conread position:
               2-230
               

               Cow position:
               chr15:16946795-16946565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               76, 129
               

               Conread position:
               5-438
               

               Cow position:
               chr15:9072412-9071969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 160
               

               Conread position:
               6-194
               

               Cow position:
               chr15:5912698-5912891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               72, 10
               

               Conread position:
               14-411
               

               Cow position:
               chr15:37470243-37470625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               279
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               146, 64
               

               Conread position:
               16-330
               

               Cow position:
               chr15:19192902-19192590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               31-387
               

               Cow position:
               chr15:3832216-3832559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               49, 59
               

               Conread position:
               31-424
               

               Cow position:
               chr15:25825803-25825409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 96
               

               Conread position:
               33-443
               

               Cow position:
               chr15:20351888-20352308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               295
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               15, 23
               

               Conread position:
               36-368
               

               Cow position:
               chr15:45216889-45217216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               219
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               207, 46
               

               Conread position:
               36-420
               

               Cow position:
               chr15:34255671-34255299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               280
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               174, 92
               

               Conread position:
               41-420
               

               Cow position:
               chr15:6565381-6565024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               271
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               49, 31
               

               Conread position:
               67-347
               

               Cow position:
               chr15:11011507-11011238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               135, 80
               

               Conread position:
               75-338
               

               Cow position:
               chr15:40009544-40009289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               127, 15
               

               Conread position:
               76-233
               

               Cow position:
               chr15:17124926-17124773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               27, 10
               

               Conread position:
               79-252
               

               Cow position:
               chr15:22854512-22854683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               7, 69
               

               Conread position:
               79-316
               

               Cow position:
               chr15:17213563-17213792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               195, 10
               

               Conread position:
               83-259
               

               Cow position:
               chr15:50993850-50994029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               13, 51
               

               Conread position:
               88-438
               

               Cow position:
               chr15:35041756-35041415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 59
               

               Conread position:
               91-376
               

               Cow position:
               chr15:25584967-25584687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               209
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               111, 56
               

               Conread position:
               92-443
               

               Cow position:
               chr15:22532360-22532703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 55
               

               Conread position:
               105-438
               

               Cow position:
               chr15:24285116-24285448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 42
               

               Conread position:
               105-443
               

               Cow position:
               chr15:1128130-1128450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               97, 42
               

               Conread position:
               177-444
               

               Cow position:
               chr15:4641223-4640952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               25, 226
               

               Conread position:
               1-226
               

               Cow position:
               chr16:52814110-52814334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               48, 140
               

               Conread position:
               1-228
               

               Cow position:
               chr16:15734637-15734411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               77, 132
               

               Conread position:
               1-233
               

               Cow position:
               chr16:41680703-41680938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               77, 139
               

               Conread position:
               1-306
               

               Cow position:
               chr16:12243495-12243796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               161, 27
               

               Conread position:
               1-330
               

               Cow position:
               chr16:13043886-13043532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               253
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               77, 323
               

               Conread position:
               1-331
               

               Cow position:
               chr16:22785978-22786312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 158
               

               Conread position:
               1-336
               

               Cow position:
               chr16:47729091-47728752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               84, 157
               

               Conread position:
               1-358
               

               Cow position:
               chr16:19445843-19445492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               73, 106
               

               Conread position:
               1-403
               

               Cow position:
               chr16:14799673-14800079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               1-413
               

               Cow position:
               chr16:53547524-53547934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 157
               

               Conread position:
               1-422
               

               Cow position:
               chr16:17867417-17867820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 73
               

               Conread position:
               1-428
               

               Cow position:
               chr16:19152761-19152322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               299
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               77, 90
               

               Conread position:
               1-438
               

               Cow position:
               chr16:341331-340878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               324
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               51, 154
               

               Conread position:
               2-428
               

               Cow position:
               chr16:14441960-14441529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 146
               

               Conread position:
               2-438
               

               Cow position:
               chr16:37442049-37442503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 217
               

               Conread position:
               3-330
               

               Cow position:
               chr16:30572550-30572876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               231
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               198, 69
               

               Conread position:
               3-390
               

               Cow position:
               chr16:42709090-42709477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               267
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               199, 70
               

               Conread position:
               7-270
               

               Cow position:
               chr16:23035236-23035498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               126, 66
               

               Conread position:
               11-424
               

               Cow position:
               chr16:16963860-16963452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 24
               

               Conread position:
               12-438
               

               Cow position:
               chr16:10857565-10857999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 139
               

               Conread position:
               14-424
               

               Cow position:
               chr16:43850777-43851184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 143
               

               Conread position:
               26-324
               

               Cow position:
               chr16:29510312-29510592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               73, 19
               

               Conread position:
               68-301
               

               Cow position:
               chr16:41608601-41608372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               99, 19
               

               Conread position:
               68-325
               

               Cow position:
               chr16:51069930-51070189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               101, 19
               

               Conread position:
               76-441
               

               Cow position:
               chr16:23990500-23990863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 71
               

               Conread position:
               78-370
               

               Cow position:
               chr16:37380250-37379963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               14, 8
               

               Conread position:
               78-382
               

               Cow position:
               chr16:13611473-13611772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               124, 69
               

               Conread position:
               78-420
               

               Cow position:
               chr16:42340176-42339850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               22, 11
               

               Conread position:
               81-311
               

               Cow position:
               chr16:54515704-54515481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               15, 68
               

               Conread position:
               83-337
               

               Cow position:
               chr16:39417142-39417381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               119, 64
               

               Conread position:
               87-394
               

               Cow position:
               chr16:23729955-23730267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               224
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               46, 75
               

               Conread position:
               96-439
               

               Cow position:
               chr16:4399699-4399351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               243
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               50, 251
               

               Conread position:
               105-323
               

               Cow position:
               chr16:2308640-2308426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               169, 42
               

               Conread position:
               1-233
               

               Cow position:
               chr17:12554603-12554826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               125, 73
               

               Conread position:
               1-318
               

               Cow position:
               chr17:15450463-15450143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               228
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               79, 53
               

               Conread position:
               1-328
               

               Cow position:
               chr17:14230980-14231304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               60, 136
               

               Conread position:
               1-330
               

               Cow position:
               chr17:20208721-20209033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               151, 77
               

               Conread position:
               1-443
               

               Cow position:
               chr17:28847555-28847985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 157
               

               Conread position:
               2-398
               

               Cow position:
               chr17:19891729-19891324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 132
               

               Conread position:
               2-424
               

               Cow position:
               chr17:30204766-30204340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 52
               

               Conread position:
               4-331
               

               Cow position:
               chr17:35180928-35180616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 74
               

               Conread position:
               36-361
               

               Cow position:
               chr17:33998980-33999301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               39, 116
               

               Conread position:
               37-443
               

               Cow position:
               chr17:1653622-1654020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 117
               

               Conread position:
               78-306
               

               Cow position:
               chr17:18824813-18824589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               81, 12
               

               Conread position:
               79-318
               

               Cow position:
               chr17:32471762-32472003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               26, 219
               

               Conread position:
               88-438
               

               Cow position:
               chr17:24580285-24580613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 59
               

               Conread position:
               92-439
               

               Cow position:
               chr17:1061052-1061391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 59
               

               Conread position:
               92-444
               

               Cow position:
               chr17:19455304-19455633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               255
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               181, 55
               

               Conread position:
               112-439
               

               Cow position:
               chr17:27679249-27679577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 64
               

               Conread position:
               1-180
               

               Cow position:
               chr18:23669235-23669420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               77, 156
               

               Conread position:
               1-312
               

               Cow position:
               chr18:22433899-22434208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               102, 149
               

               Conread position:
               1-324
               

               Cow position:
               chr18:16258893-16258577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               65, 118
               

               Conread position:
               1-330
               

               Cow position:
               chr18:29224727-29224381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               239
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               76, 173
               

               Conread position:
               1-331
               

               Cow position:
               chr18:48550021-48549693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               238
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               151, 53
               

               Conread position:
               1-397
               

               Cow position:
               chr18:35471896-35472303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 24
               

               Conread position:
               1-438
               

               Cow position:
               chr18:32860691-32860244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 220
               

               Conread position:
               1-443
               

               Cow position:
               chr18:11367720-11368190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 161
               

               Conread position:
               4-328
               

               Cow position:
               chr18:23317079-23317398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               77, 145
               

               Conread position:
               7-323
               

               Cow position:
               chr18:8170214-8169884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               68, 237
               

               Conread position:
               11-233
               

               Cow position:
               chr18:54275552-54275328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               67, 141
               

               Conread position:
               13-350
               

               Cow position:
               chr18:28085594-28085259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               245
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               65, 143
               

               Conread position:
               14-326
               

               Cow position:
               chr18:23652601-23652906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               58, 143
               

               Conread position:
               23-330
               

               Cow position:
               chr18:40694978-40694679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               5, 77
               

               Conread position:
               38-324
               

               Cow position:
               chr18:18918963-18919244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               37, 119
               

               Conread position:
               62-331
               

               Cow position:
               chr18:23807910-23808171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               74-445
               

               Cow position:
               chr18:26535558-26535913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               25, 104
               

               Conread position:
               79-432
               

               Cow position:
               chr18:55461761-55462107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               131, 68
               

               Conread position:
               80-323
               

               Cow position:
               chr18:38985637-38985397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               122, 67
               

               Conread position:
               83-443
               

               Cow position:
               chr18:54031645-54031299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 49
               

               Conread position:
               88-416
               

               Cow position:
               chr18:56361666-56361983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               114, 16
               

               Conread position:
               89-318
               

               Cow position:
               chr18:19487050-19486828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               112, 58
               

               Conread position:
               90-424
               

               Cow position:
               chr18:29796489-29796824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               112, 57
               

               Conread position:
               105-327
               

               Cow position:
               chr18:329357-329567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               169, 71
               

               Conread position:
               107-443
               

               Cow position:
               chr18:14480387-14480057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               94, 40
               

               Conread position:
               1-255
               

               Cow position:
               chr19:3082139-3081897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               1-275
               

               Cow position:
               chr19:30452714-30452996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               216
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               65, 154
               

               Conread position:
               1-329
               

               Cow position:
               chr19:36478950-36478617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               77, 14
               

               Conread position:
               1-415
               

               Cow position:
               chr19:426214-426602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               289
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               200, 83
               

               Conread position:
               1-428
               

               Cow position:
               chr19:20700136-20699712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 91
               

               Conread position:
               1-432
               

               Cow position:
               chr19:4600118-4599703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 64
               

               Conread position:
               1-438
               

               Cow position:
               chr19:30746462-30746018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 157
               

               Conread position:
               1-438
               

               Cow position:
               chr19:31395843-31396274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 150
               

               Conread position:
               1-443
               

               Cow position:
               chr19:21285027-21285489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 20
               

               Conread position:
               63-364
               

               Cow position:
               chr19:13129862-13129582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               13, 89
               

               Conread position:
               67-380
               

               Cow position:
               chr19:24145000-24144695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               36, 9
               

               Conread position:
               67-443
               

               Cow position:
               chr19:4445639-4446008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               273
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               10, 22
               

               Conread position:
               69-318
               

               Cow position:
               chr19:43517214-43516972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               13, 79
               

               Conread position:
               69-328
               

               Cow position:
               chr19:9387611-9387360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               133, 14
               

               Conread position:
               78-355
               

               Cow position:
               chr19:35742130-35741854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               124, 66
               

               Conread position:
               79-328
               

               Cow position:
               chr19:19662015-19661768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               13, 69
               

               Conread position:
               83-422
               

               Cow position:
               chr19:36602348-36602001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               70, 193
               

               Conread position:
               88-397
               

               Cow position:
               chr19:38340019-38340316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 71
               

               Conread position:
               96-438
               

               Cow position:
               chr19:55422321-55421982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 70
               

               Conread position:
               1-141
               

               Cow position:
               chr2:15105675-15105536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               132, 89
               

               Conread position:
               1-189
               

               Cow position:
               chr2:43345226-43345407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               90, 83
               

               Conread position:
               1-262
               

               Cow position:
               chr2:33791414-33791680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               77, 155
               

               Conread position:
               1-300
               

               Cow position:
               chr2:32393479-32393184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               226
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               75, 153
               

               Conread position:
               1-312
               

               Cow position:
               chr2:15769440-15769736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               84, 20
               

               Conread position:
               1-318
               

               Cow position:
               chr2:54890386-54890069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               241
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               77, 157
               

               Conread position:
               1-319
               

               Cow position:
               chr2:19749671-19749360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               76, 65
               

               Conread position:
               1-323
               

               Cow position:
               chr2:72598870-72598547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               234
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               88, 224
               

               Conread position:
               1-336
               

               Cow position:
               chr2:53716916-53717252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 76
               

               Conread position:
               1-353
               

               Cow position:
               chr2:14465492-14465839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 148
               

               Conread position:
               1-359
               

               Cow position:
               chr2:85056061-85055733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               200, 11
               

               Conread position:
               1-438
               

               Cow position:
               chr2:62674173-62674601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 91
               

               Conread position:
               1-438
               

               Cow position:
               chr2:63288086-63288521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 13
               

               Conread position:
               2-438
               

               Cow position:
               chr2:71121091-71120666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 89
               

               Conread position:
               12-282
               

               Cow position:
               chr2:1651459-1651187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               114, 148
               

               Conread position:
               17-443
               

               Cow position:
               chr2:10296147-10295723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 137
               

               Conread position:
               33-390
               

               Cow position:
               chr2:28303353-28302998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               15, 23
               

               Conread position:
               57-432
               

               Cow position:
               chr2:21644445-21644819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 93
               

               Conread position:
               75-398
               

               Cow position:
               chr2:23120785-23121091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               127, 8
               

               Conread position:
               78-330
               

               Cow position:
               chr2:71495373-71495124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 51
               

               Conread position:
               78-418
               

               Cow position:
               chr2:80324872-80325199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               241
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               25, 14
               

               Conread position:
               78-443
               

               Cow position:
               chr2:38628889-38628537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               258
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               14, 70
               

               Conread position:
               80-395
               

               Cow position:
               chr2:41313870-41313569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 8
               

               Conread position:
               83-443
               

               Cow position:
               chr2:18061655-18062013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 64
               

               Conread position:
               83-443
               

               Cow position:
               chr2:39941466-39941117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               117, 64
               

               Conread position:
               96-324
               

               Cow position:
               chr2:52171220-52170993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               103, 51
               

               Conread position:
               1-247
               

               Cow position:
               chr20:16585523-16585776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               31, 9
               

               Conread position:
               1-293
               

               Cow position:
               chr20:25293704-25293409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               71, 146
               

               Conread position:
               1-327
               

               Cow position:
               chr20:20350882-20351212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 140
               

               Conread position:
               1-328
               

               Cow position:
               chr20:7803055-7803367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 133
               

               Conread position:
               1-330
               

               Cow position:
               chr20:35897630-35897296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 230
               

               Conread position:
               1-336
               

               Cow position:
               chr20:27843756-27843424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 40
               

               Conread position:
               1-342
               

               Cow position:
               chr20:19238318-19238667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 156
               

               Conread position:
               1-438
               

               Cow position:
               chr20:22920059-22920489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 158
               

               Conread position:
               1-443
               

               Cow position:
               chr20:32153619-32153171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               305
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               76, 101
               

               Conread position:
               1-444
               

               Cow position:
               chr20:13821471-13821919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 11
               

               Conread position:
               2-225
               

               Cow position:
               chr20:17474677-17474907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               76, 157
               

               Conread position:
               3-438
               

               Cow position:
               chr20:8869178-8869604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               276
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               98, 46
               

               Conread position:
               4-385
               

               Cow position:
               chr20:12809105-12808722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               266
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               108, 223
               

               Conread position:
               8-354
               

               Cow position:
               chr20:27977602-27977959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 151
               

               Conread position:
               11-318
               

               Cow position:
               chr20:7600680-7600987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               234
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               67, 45
               

               Conread position:
               12-392
               

               Cow position:
               chr20:15147918-15148308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               286
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               68, 105
               

               Conread position:
               31-239
               

               Cow position:
               chr20:35384830-35384618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 126
               

               Conread position:
               45-323
               

               Cow position:
               chr20:4359606-4359869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 47
               

               Conread position:
               69-417
               

               Cow position:
               chr20:5998639-5998984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               10, 79
               

               Conread position:
               78-313
               

               Cow position:
               chr20:39325413-39325180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 8
               

               Conread position:
               78-370
               

               Cow position:
               chr20:7659195-7659473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               78-437
               

               Cow position:
               chr20:24392001-24391672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               112, 10
               

               Conread position:
               78-443
               

               Cow position:
               chr20:6423993-6423631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               130, 10
               

               Conread position:
               78-443
               

               Cow position:
               chr20:38818029-38817679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               124, 69
               

               Conread position:
               95-443
               

               Cow position:
               chr20:31746622-31746960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               179, 53
               

               Conread position:
               1-254
               

               Cow position:
               chr21:34141055-34141312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               77, 94
               

               Conread position:
               1-330
               

               Cow position:
               chr21:6618866-6619177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               71, 20
               

               Conread position:
               1-427
               

               Cow position:
               chr21:24944766-24945201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 147
               

               Conread position:
               1-428
               

               Cow position:
               chr21:37941554-37941981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 124
               

               Conread position:
               1-431
               

               Cow position:
               chr21:23499699-23500123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 34
               

               Conread position:
               1-440
               

               Cow position:
               chr21:23786161-23785717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 154
               

               Conread position:
               2-395
               

               Cow position:
               chr21:16166512-16166901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 76
               

               Conread position:
               2-424
               

               Cow position:
               chr21:30897543-30897128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 23
               

               Conread position:
               7-330
               

               Cow position:
               chr21:26614538-26614858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               62, 150
               

               Conread position:
               12-443
               

               Cow position:
               chr21:5597272-5596844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 146
               

               Conread position:
               61-443
               

               Cow position:
               chr21:11644911-11645301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               276
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               213, 15
               

               Conread position:
               67-441
               

               Cow position:
               chr21:30990223-30990580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 67
               

               Conread position:
               71-438
               

               Cow position:
               chr21:29069280-29069637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 25
               

               Conread position:
               75-324
               

               Cow position:
               chr21:42135573-42135819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               28, 21
               

               Conread position:
               75-438
               

               Cow position:
               chr21:29943050-29942693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 73
               

               Conread position:
               76-321
               

               Cow position:
               chr21:45850668-45850902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               126, 9
               

               Conread position:
               76-388
               

               Cow position:
               chr21:13034997-13035310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               23, 72
               

               Conread position:
               77-350
               

               Cow position:
               chr21:10866923-10866652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 12
               

               Conread position:
               78-432
               

               Cow position:
               chr21:40786722-40786368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 98
               

               Conread position:
               78-442
               

               Cow position:
               chr21:19363420-19363765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               254
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               195, 23
               

               Conread position:
               80-229
               

               Cow position:
               chr21:32904116-32904258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               121, 10
               

               Conread position:
               81-443
               

               Cow position:
               chr21:82121-81754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 67
               

               Conread position:
               82-443
               

               Cow position:
               chr21:44331254-44331601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 49
               

               Conread position:
               83-328
               

               Cow position:
               chr21:31764091-31764335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               188
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               18, 9
               

               Conread position:
               88-432
               

               Cow position:
               chr21:48484411-48484743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               247
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               9, 65
               

               Conread position:
               92-255
               

               Cow position:
               chr21:37886440-37886285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               109, 55
               

               Conread position:
               92-438
               

               Cow position:
               chr21:28512558-28512232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 13
               

               Conread position:
               98-336
               

               Cow position:
               chr21:24714681-24714447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               104, 118
               

               Conread position:
               117-328
               

               Cow position:
               chr21:41579761-41579552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               52, 38
               

               Conread position:
               141-443
               

               Cow position:
               chr21:20910108-20910425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               37, 9
               

               Conread position:
               1-327
               

               Cow position:
               chr22:30655382-30655053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               225
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               77, 183
               

               Conread position:
               1-359
               

               Cow position:
               chr22:45291383-45291035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               201, 48
               

               Conread position:
               1-443
               

               Cow position:
               chr22:39302937-39303386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 157
               

               Conread position:
               2-318
               

               Cow position:
               chr22:19295964-19295653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               215
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               158, 62
               

               Conread position:
               2-442
               

               Cow position:
               chr22:4324286-4323848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 86
               

               Conread position:
               3-370
               

               Cow position:
               chr22:25457903-25457519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               273
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               75, 26
               

               Conread position:
               3-438
               

               Cow position:
               chr22:28755441-28755863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 78
               

               Conread position:
               11-271
               

               Cow position:
               chr22:15496567-15496309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               54, 106
               

               Conread position:
               11-330
               

               Cow position:
               chr22:27224179-27223864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               37, 45
               

               Conread position:
               17-329
               

               Cow position:
               chr22:14820521-14820818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               219
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               89, 132
               

               Conread position:
               32-331
               

               Cow position:
               chr22:4651208-4650912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 33
               

               Conread position:
               67-330
               

               Cow position:
               chr22:845893-845635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 84
               

               Conread position:
               68-442
               

               Cow position:
               chr22:11745921-11746282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 15
               

               Conread position:
               69-241
               

               Cow position:
               chr22:33386523-33386686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               132, 13
               

               Conread position:
               69-396
               

               Cow position:
               chr22:40071958-40071633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               96, 9
               

               Conread position:
               69-443
               

               Cow position:
               chr22:8481630-8481265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 79
               

               Conread position:
               71-359
               

               Cow position:
               chr22:609953-610222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               215
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               130, 76
               

               Conread position:
               78-427
               

               Cow position:
               chr22:41271025-41271355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 8
               

               Conread position:
               91-330
               

               Cow position:
               chr22:6709816-6710043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               111, 62
               

               Conread position:
               91-331
               

               Cow position:
               chr22:2010765-2010529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               111, 64
               

               Conread position:
               93-432
               

               Cow position:
               chr22:39452560-39452209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 320
               

               Conread position:
               93-441
               

               Cow position:
               chr22:44717674-44717341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 58
               

               Conread position:
               96-388
               

               Cow position:
               chr22:33485642-33485932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               214
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               104, 70
               

               Conread position:
               96-432
               

               Cow position:
               chr22:30515211-30514886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 62
               

               Conread position:
               177-447
               

               Cow position:
               chr22:39708336-39708065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               25, 148
               

               Conread position:
               212-447
               

               Cow position:
               chr22:10079227-10079465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               63, 10
               

               Conread position:
               1-234
               

               Cow position:
               chr23:7253135-7252902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               125, 39
               

               Conread position:
               1-298
               

               Cow position:
               chr23:30307976-30307677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               214
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               54, 45
               

               Conread position:
               1-438
               

               Cow position:
               chr23:16170775-16170326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 21
               

               Conread position:
               2-300
               

               Cow position:
               chr23:7063449-7063739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               58, 151
               

               Conread position:
               3-222
               

               Cow position:
               chr23:38026755-38026977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               72, 29
               

               Conread position:
               7-438
               

               Cow position:
               chr23:25408894-25408466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 56
               

               Conread position:
               12-422
               

               Cow position:
               chr23:5737664-5738083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               295
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               66, 203
               

               Conread position:
               12-444
               

               Cow position:
               chr23:645385-644938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               320
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               69, 145
               

               Conread position:
               18-438
               

               Cow position:
               chr23:16609755-16610181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 139
               

               Conread position:
               20-330
               

               Cow position:
               chr23:2436276-2436590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               57, 156
               

               Conread position:
               25-317
               

               Cow position:
               chr23:38248932-38248650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               221
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               60, 44
               

               Conread position:
               26-405
               

               Cow position:
               chr23:9546448-9546071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 134
               

               Conread position:
               32-368
               

               Cow position:
               chr23:11069251-11068920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               46, 123
               

               Conread position:
               70-438
               

               Cow position:
               chr23:11473519-11473876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 22
               

               Conread position:
               78-350
               

               Cow position:
               chr23:38208708-38208428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               69, 154
               

               Conread position:
               78-443
               

               Cow position:
               chr23:19002080-19002446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 69
               

               Conread position:
               79-435
               

               Cow position:
               chr23:31607169-31607540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 27
               

               Conread position:
               83-442
               

               Cow position:
               chr23:9268573-9268212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 67
               

               Conread position:
               86-438
               

               Cow position:
               chr23:9594854-9595200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               246
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               11, 81
               

               Conread position:
               91-438
               

               Cow position:
               chr23:36146490-36146816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               248
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               107, 38
               

               Conread position:
               92-321
               

               Cow position:
               chr23:4810720-4810496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               110, 8
               

               Conread position:
               92-443
               

               Cow position:
               chr23:614934-615280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 69
               

               Conread position:
               1-301
               

               Cow position:
               chr24:15473988-15473700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               93, 11
               

               Conread position:
               1-438
               

               Cow position:
               chr24:25229022-25229472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 148
               

               Conread position:
               1-438
               

               Cow position:
               chr24:35836205-35836632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 33
               

               Conread position:
               1-441
               

               Cow position:
               chr24:25246078-25245636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 73
               

               Conread position:
               2-314
               

               Cow position:
               chr24:16476446-16476134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               238
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               60, 140
               

               Conread position:
               2-331
               

               Cow position:
               chr24:30900188-30900517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               76, 9
               

               Conread position:
               3-443
               

               Cow position:
               chr24:37386306-37386762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               333
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               75, 144
               

               Conread position:
               9-443
               

               Cow position:
               chr24:38001705-38002133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               314
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               68, 62
               

               Conread position:
               17-438
               

               Cow position:
               chr24:14913520-14913934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               293
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               115, 53
               

               Conread position:
               17-438
               

               Cow position:
               chr24:28028683-28029101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 47
               

               Conread position:
               34-443
               

               Cow position:
               chr24:38643639-38643232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 44
               

               Conread position:
               66-438
               

               Cow position:
               chr24:25678008-25677636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 83
               

               Conread position:
               68-438
               

               Cow position:
               chr24:28354115-28353762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               206, 79
               

               Conread position:
               71-410
               

               Cow position:
               chr24:18405356-18405673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               240
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               29, 87
               

               Conread position:
               73-443
               

               Cow position:
               chr24:24250689-24250320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               129, 74
               

               Conread position:
               76-411
               

               Cow position:
               chr24:43733929-43733601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 69
               

               Conread position:
               78-366
               

               Cow position:
               chr24:27054366-27054081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               18, 71
               

               Conread position:
               78-443
               

               Cow position:
               chr24:40130083-40129708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               272
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               19, 8
               

               Conread position:
               88-302
               

               Cow position:
               chr24:42825546-42825759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               9, 68
               

               Conread position:
               92-293
               

               Cow position:
               chr24:30695762-30695951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               110, 34
               

               Conread position:
               104-352
               

               Cow position:
               chr24:6913835-6914074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               98, 53
               

               Conread position:
               119-438
               

               Cow position:
               chr24:26846358-26846675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 28
               

               Conread position:
               1-316
               

               Cow position:
               chr25:14467030-14467335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               201, 19
               

               Conread position:
               1-330
               

               Cow position:
               chr25:18206240-18206566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 153
               

               Conread position:
               2-322
               

               Cow position:
               chr25:38358156-38357845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               58, 94
               

               Conread position:
               8-438
               

               Cow position:
               chr25:16429987-16430397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 89
               

               Conread position:
               11-395
               

               Cow position:
               chr25:2126514-2126135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 135
               

               Conread position:
               32-330
               

               Cow position:
               chr25:12756531-12756836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               49, 123
               

               Conread position:
               70-380
               

               Cow position:
               chr25:25051396-25051703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 20
               

               Conread position:
               74-423
               

               Cow position:
               chr25:12239165-12239496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 73
               

               Conread position:
               78-396
               

               Cow position:
               chr25:9957060-9957369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               227
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               19, 78
               

               Conread position:
               1-326
               

               Cow position:
               chr26:30603021-30603364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               84, 246
               

               Conread position:
               1-329
               

               Cow position:
               chr26:22623071-22622733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               239
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               70, 142
               

               Conread position:
               1-330
               

               Cow position:
               chr26:6828246-6827918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 13
               

               Conread position:
               1-368
               

               Cow position:
               chr26:12069697-12069338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               269
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               64, 151
               

               Conread position:
               1-438
               

               Cow position:
               chr26:22161781-22162223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 65
               

               Conread position:
               3-303
               

               Cow position:
               chr26:14364004-14364305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               229
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               68, 153
               

               Conread position:
               33-427
               

               Cow position:
               chr26:15938698-15938307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 44
               

               Conread position:
               55-427
               

               Cow position:
               chr26:4664415-4664772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 27
               

               Conread position:
               67-301
               

               Cow position:
               chr26:31605416-31605188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 82
               

               Conread position:
               71-389
               

               Cow position:
               chr26:19459689-19459367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               123, 76
               

               Conread position:
               79-313
               

               Cow position:
               chr26:20129675-20129906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               15, 52
               

               Conread position:
               1-330
               

               Cow position:
               chr27:25676121-25676456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 10
               

               Conread position:
               1-358
               

               Cow position:
               chr27:9159100-9159438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               254
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               135, 48
               

               Conread position:
               1-443
               

               Cow position:
               chr27:11671903-11672353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               293
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               67, 141
               

               Conread position:
               2-235
               

               Cow position:
               chr27:3934793-3934559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               69, 155
               

               Conread position:
               2-437
               

               Cow position:
               chr27:28293051-28293498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               309
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               5, 154
               

               Conread position:
               2-443
               

               Cow position:
               chr27:27738035-27737599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 154
               

               Conread position:
               3-420
               

               Cow position:
               chr27:8430545-8430116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               303
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               81, 52
               

               Conread position:
               4-182
               

               Cow position:
               chr27:9261725-9261909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               47, 25
               

               Conread position:
               37-272
               

               Cow position:
               chr27:23662670-23662442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               165, 35
               

               Conread position:
               67-443
               

               Cow position:
               chr27:23452424-23452810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               272
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               15, 26
               

               Conread position:
               68-317
               

               Cow position:
               chr27:30888927-30888692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               13, 21
               

               Conread position:
               73-322
               

               Cow position:
               chr27:16871942-16871706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               201, 74
               

               Conread position:
               77-330
               

               Cow position:
               chr27:19577650-19577895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               116, 9
               

               Conread position:
               78-442
               

               Cow position:
               chr27:4672993-4673350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 75
               

               Conread position:
               82-344
               

               Cow position:
               chr27:26441081-26440821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 65
               

               Conread position:
               87-331
               

               Cow position:
               chr27:15200686-15200919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               189
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               113, 44
               

               Conread position:
               94-428
               

               Cow position:
               chr27:17472801-17473141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               242
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               108, 82
               

               Conread position:
               97-445
               

               Cow position:
               chr27:26091400-26091066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               80, 50
               

               Conread position:
               1-201
               

               Cow position:
               chr28:22829995-22829799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               1-308
               

               Cow position:
               chr28:6277480-6277778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               81, 16
               

               Conread position:
               1-328
               

               Cow position:
               chr28:11379970-11380300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 145
               

               Conread position:
               1-357
               

               Cow position:
               chr28:7607305-7606946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 28
               

               Conread position:
               1-397
               

               Cow position:
               chr28:6486665-6486270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 154
               

               Conread position:
               3-438
               

               Cow position:
               chr28:34208777-34208352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 63
               

               Conread position:
               11-397
               

               Cow position:
               chr28:33698171-33697785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               76, 80
               

               Conread position:
               11-438
               

               Cow position:
               chr28:20265461-20265009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 150
               

               Conread position:
               13-331
               

               Cow position:
               chr28:21873818-21873512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               35, 52
               

               Conread position:
               63-438
               

               Cow position:
               chr28:10745216-10744838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               15, 91
               

               Conread position:
               69-438
               

               Cow position:
               chr28:10533938-10534301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               258
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               10, 79
               

               Conread position:
               71-409
               

               Cow position:
               chr28:7549070-7549400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 25
               

               Conread position:
               72-394
               

               Cow position:
               chr28:12619562-12619240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               225
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               19, 77
               

               Conread position:
               75-397
               

               Cow position:
               chr28:11687038-11687353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 15
               

               Conread position:
               76-443
               

               Cow position:
               chr28:32300372-32300740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 71
               

               Conread position:
               77-326
               

               Cow position:
               chr28:23621531-23621293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               197, 68
               

               Conread position:
               78-254
               

               Cow position:
               chr28:19563836-19564007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               123, 69
               

               Conread position:
               78-344
               

               Cow position:
               chr28:15263730-15263999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               10, 74
               

               Conread position:
               78-438
               

               Cow position:
               chr28:25564069-25563711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 71
               

               Conread position:
               92-330
               

               Cow position:
               chr28:25797091-25796857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               11, 47
               

               Conread position:
               96-323
               

               Cow position:
               chr28:13607853-13607633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               106, 51
               

               Conread position:
               99-234
               

               Cow position:
               chr28:23352536-23352403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               102, 55
               

               Conread position:
               1-220
               

               Cow position:
               chr29:9512939-9512714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               76, 155
               

               Conread position:
               1-312
               

               Cow position:
               chr29:34758085-34757782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               92, 28
               
1-313UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr29:16359684-16359364 (view  custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 144
               
1-330UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr29:17966027-17965691 (view  custom track)

               
               
               
Alignm length: 351

               
               
               
Alignm identity: 244

               
               
               
Alignm E-value: 2e-32

               
               
               
Alignm gaps (pig, cow): 69, 155
1-358UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr29:478171-477813 (view  custom track)

               
               
               
Alignm length: 369

               
               
               
Alignm identity: 273

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 76, 154

               
               
               Conread position:1-358
               
               
               Cow position:chr29:42268760-42268397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 154

               
               
               Conread position:1-420
               
               
               Cow position:chr29:2481276-2481688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 154

               
               
               Conread position:1-438
               
               
               Cow position:chr29:38246678-38247119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 301

               
               
               Conread position:2-298
               
               
               Cow position:chr29:31488925-31488633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:2-330
               
               
               Cow position:chr29:30812814-30812484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 155

               
               
               Conread position:2-413
               
               
               Cow position:chr29:18338477-18338894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 154

               
               
               Conread position:3-271
               
               
               Cow position:chr29:8906592-8906314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):74, 154

               
               
               Conread position:3-438
               
               
               Cow position:chr29:26224391-26223959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:313
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:11-330
               
               
               Cow position:chr29:16663148-16662819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 206

               
               
               Conread position:36-331
               
               
               Cow position:chr29:6472337-6472050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:57-442
               
               
               Cow position:chr29:28689615-28689230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 94

               
               
               Conread position:67-397
               
               
               Cow position:chr29:9709685-9709364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:67-438
               
               
               Cow position:chr29:26615729-26616110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:270
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:68-248
               
               
               Cow position:chr29:25923977-25924155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:71-331
               
               
               Cow position:chr29:19338974-19338712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):8, 117

               
               
               Conread position:72-443
               
               
               Cow position:chr29:17607398-17607035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:78-291
               
               
               Cow position:chr29:22778198-22778410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):105, 69

               
               
               Conread position:78-432
               
               
               Cow position:chr29:35458794-35459127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:92-394
               
               
               Cow position:chr29:36037667-36037380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:105-315
               
               
               Cow position:chr29:11787748-11787541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:105-443
               
               
               Cow position:chr29:12004809-12005146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:1-277
               
               
               Cow position:chr3:82703569-82703292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):75, 155

               
               
               Conread position:1-284
               
               
               Cow position:chr3:80928900-80929193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 141

               
               
               Conread position:1-299
               
               
               Cow position:chr3:3690682-3690980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 139

               
               
               Conread position:1-324
               
               
               Cow position:chr3:42594611-42594938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:1-330
               
               
               Cow position:chr3:73417556-73417234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:1-428
               
               
               Cow position:chr3:84153359-84152929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:1-438
               
               
               Cow position:chr3:24531864-24531443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-441
               
               
               Cow position:chr3:60174445-60174878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:1-443
               
               
               Cow position:chr3:20471323-20471767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:1-443
               
               
               Cow position:chr3:67044056-67044496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:1-443
               
               
               Cow position:chr3:78546073-78546498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 76

               
               
               Conread position:2-322
               
               
               Cow position:chr3:23478267-23477955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:2-331
               
               
               Cow position:chr3:60854810-60855127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:3-228
               
               
               Cow position:chr3:56711600-56711833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 155

               
               
               Conread position:3-428
               
               
               Cow position:chr3:8753499-8753078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 75

               
               
               Conread position:3-438
               
               
               Cow position:chr3:42489262-42489711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 154

               
               
               Conread position:6-438
               
               
               Cow position:chr3:55460460-55460891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 147

               
               
               Conread position:11-255
               
               
               Cow position:chr3:61009404-61009648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:12-305
               
               
               Cow position:chr3:11357623-11357907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:14-330
               
               
               Cow position:chr3:58131026-58130712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:16-213
               
               
               Cow position:chr3:42490437-42490643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:32-331
               
               
               Cow position:chr3:23111502-23111793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):167, 115

               
               
               Conread position:32-362
               
               
               Cow position:chr3:77225129-77224792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:67-396
               
               
               Cow position:chr3:53150294-53149970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 11

               
               
               Conread position:68-324
               
               
               Cow position:chr3:81473975-81473722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:68-438
               
               
               Cow position:chr3:43657744-43658111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:73-432
               
               
               Cow position:chr3:31501312-31500965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):129, 57

               
               
               Conread position:76-300
               
               
               Cow position:chr3:54881717-54881498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):198, 11

               
               
               Conread position:78-399
               
               
               Cow position:chr3:34315999-34316337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:79-326
               
               
               Cow position:chr3:8457611-8457373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:81-307
               
               
               Cow position:chr3:49337676-49337465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):120, 13

               
               
               Conread position:86-324
               
               
               Cow position:chr3:36100784-36100546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):88, 59

               
               
               Conread position:90-320
               
               
               Cow position:chr3:32399310-32399533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):184, 57

               
               
               Conread position:92-317
               
               
               Cow position:chr3:7331170-7331394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):110, 55

               
               
               Conread position:94-354
               
               
               Cow position:chr3:23092037-23092300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):108, 53

               
               
               Conread position:105-330
               
               
               Cow position:chr3:36032608-36032394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:1-161
               
               
               Cow position:chr4:41975659-41975828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 160

               
               
               Conread position:1-251
               
               
               Cow position:chr4:8597635-8597886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 138

               
               
               Conread position:1-264
               
               
               Cow position:chr4:47511079-47510812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 54

               
               
               Conread position:1-308
               
               
               Cow position:chr4:59565590-59565290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:1-313
               
               
               Cow position:chr4:58433161-58433466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 135

               
               
               Conread position:1-324
               
               
               Cow position:chr4:9822205-9821890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 83

               
               
               Conread position:1-330
               
               
               Cow position:chr4:32749257-32748923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 151

               
               
               Conread position:1-330
               
               
               Cow position:chr4:45114550-45114878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:1-410
               
               
               Cow position:chr4:53763067-53763467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 103

               
               
               Conread position:1-421
               
               
               Cow position:chr4:5623143-5623568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 153

               
               
               Conread position:1-428
               
               
               Cow position:chr4:5188955-5189365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:1-438
               
               
               Cow position:chr4:58856697-58857114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 28

               
               
               Conread position:2-308
               
               
               Cow position:chr4:57652296-57652003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:2-422
               
               
               Cow position:chr4:15283423-15282999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:10-420
               
               
               Cow position:chr4:61191516-61191110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):60, 68

               
               
               Conread position:13-292
               
               
               Cow position:chr4:52597432-52597716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):65, 141

               
               
               Conread position:16-236
               
               
               Cow position:chr4:21162712-21162488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 145

               
               
               Conread position:16-389
               
               
               Cow position:chr4:45240318-45239943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 142

               
               
               Conread position:22-326
               
               
               Cow position:chr4:51407932-51408234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:23-269
               
               
               Cow position:chr4:61171941-61171693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:42-443
               
               
               Cow position:chr4:61271620-61272016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:57-397
               
               
               Cow position:chr4:19265571-19265232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:67-284
               
               
               Cow position:chr4:56591028-56590804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:68-304
               
               
               Cow position:chr4:13406687-13406459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:69-443
               
               
               Cow position:chr4:19097270-19096910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:71-438
               
               
               Cow position:chr4:33433284-33433636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 34

               
               
               Conread position:71-443
               
               
               Cow position:chr4:24001989-24002356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 12

               
               
               Conread position:76-438
               
               
               Cow position:chr4:65825870-65826245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:78-293
               
               
               Cow position:chr4:19463468-19463255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:78-443
               
               
               Cow position:chr4:19584688-19584317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:89-324
               
               
               Cow position:chr4:23847085-23847317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:153-315
               
               
               Cow position:chr4:20926256-20926416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:1-152
               
               
               Cow position:chr5:60968499-60968337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-219
               
               
               Cow position:chr5:34483442-34483666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 157

               
               
               Conread position:1-272
               
               
               Cow position:chr5:34168054-34167780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):77, 157

               
               
               Conread position:1-315
               
               
               Cow position:chr5:37425834-37425519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):80, 90

               
               
               Conread position:1-331
               
               
               Cow position:chr5:51076553-51076885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 155

               
               
               Conread position:1-357
               
               
               Cow position:chr5:328098-328447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):159, 85

               
               
               Conread position:1-376
               
               
               Cow position:chr5:21167041-21167423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):111, 73

               
               
               Conread position:1-431
               
               
               Cow position:chr5:23646925-23647349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 83

               
               
               Conread position:1-438
               
               
               Cow position:chr5:51952470-51952010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 157

               
               
               Conread position:1-443
               
               
               Cow position:chr5:25927604-25928038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 151

               
               
               Conread position:1-443
               
               
               Cow position:chr5:27904500-27904074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:1-443
               
               
               Cow position:chr5:48224491-48224925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 146

               
               
               Conread position:1-447
               
               
               Cow position:chr5:70128232-70127835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):273, 76

               
               
               Conread position:2-392
               
               
               Cow position:chr5:23753128-23753516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):76, 141

               
               
               Conread position:4-324
               
               
               Cow position:chr5:57127102-57126782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:4-329
               
               
               Cow position:chr5:9233997-9234319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 75

               
               
               Conread position:4-443
               
               
               Cow position:chr5:15882379-15882830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:9-443
               
               
               Cow position:chr5:48573688-48574127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:11-313
               
               
               Cow position:chr5:54111994-54111696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:16-331
               
               
               Cow position:chr5:26099302-26099610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:31-346
               
               
               Cow position:chr5:50900959-50900653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 122

               
               
               Conread position:37-438
               
               
               Cow position:chr5:26562212-26561797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:57-413
               
               
               Cow position:chr5:20554725-20555070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 25

               
               
               Conread position:67-338
               
               
               Cow position:chr5:72310722-72310467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):207, 78

               
               
               Conread position:67-443
               
               
               Cow position:chr5:6086541-6086919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 78

               
               
               Conread position:74-283
               
               
               Cow position:chr5:27492488-27492281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:77-438
               
               
               Cow position:chr5:45940607-45940960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 70

               
               
               Conread position:78-347
               
               
               Cow position:chr5:65924684-65924959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):25, 180

               
               
               Conread position:78-438
               
               
               Cow position:chr5:27690055-27690406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:78-441
               
               
               Cow position:chr5:40711430-40711804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):9, 67

               
               
               Conread position:78-443
               
               
               Cow position:chr5:17028100-17027744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:78-443
               
               
               Cow position:chr5:57935103-57935465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:80-420
               
               
               Cow position:chr5:1398075-1398418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:87-438
               
               
               Cow position:chr5:6896130-6896471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 7

               
               
               Conread position:90-441
               
               
               Cow position:chr5:34678887-34678543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:93-443
               
               
               Cow position:chr5:6987154-6986804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:113-438
               
               
               Cow position:chr5:58793638-58793961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 88

               
               
               Conread position:116-301
               
               
               Cow position:chr5:14513086-14512902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:1-326
               
               
               Cow position:chr6:27710753-27710434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:1-326
               
               
               Cow position:chr6:55935872-55936197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 130

               
               
               Conread position:1-330
               
               
               Cow position:chr6:20172331-20171996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 157

               
               
               Conread position:1-331
               
               
               Cow position:chr6:29084101-29084451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 146

               
               
               Conread position:1-428
               
               
               Cow position:chr6:3017555-3017116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 150

               
               
               Conread position:1-428
               
               
               Cow position:chr6:45617328-45617762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 156

               
               
               Conread position:1-434
               
               
               Cow position:chr6:10423273-10422836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:1-438
               
               
               Cow position:chr6:11159898-11160350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 154

               
               
               Conread position:1-438
               
               
               Cow position:chr6:29077840-29077396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 136

               
               
               Conread position:1-445
               
               
               Cow position:chr6:23891662-23891206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 157

               
               
               Conread position:2-271
               
               
               Cow position:chr6:4666692-4666950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:2-443
               
               
               Cow position:chr6:51071812-51071365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 74

               
               
               Conread position:3-315
               
               
               Cow position:chr6:44377373-44377056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 149

               
               
               Conread position:3-370
               
               
               Cow position:chr6:59276839-59277207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:3-438
               
               
               Cow position:chr6:58594000-58594444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 157

               
               
               Conread position:6-438
               
               
               Cow position:chr6:41557569-41557150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:11-443
               
               
               Cow position:chr6:13592804-13592390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:12-326
               
               
               Cow position:chr6:11382876-11383185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 152

               
               
               Conread position:16-227
               
               
               Cow position:chr6:52602165-52602368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 70

               
               
               Conread position:67-428
               
               
               Cow position:chr6:561656-561297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:68-314
               
               
               Cow position:chr6:24223129-24223371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:68-412
               
               
               Cow position:chr6:6722130-6721814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):133, 14

               
               
               Conread position:78-330
               
               
               Cow position:chr6:67304824-67304577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:79-324
               
               
               Cow position:chr6:10254260-10254023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:79-443
               
               
               Cow position:chr6:60930880-60931237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 11

               
               
               Conread position:80-324
               
               
               Cow position:chr6:1907557-1907320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:83-437
               
               
               Cow position:chr6:46292329-46292664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:94-313
               
               
               Cow position:chr6:54864666-54864874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 57

               
               
               Conread position:95-443
               
               
               Cow position:chr6:63197162-63197507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 81

               
               
               Conread position:1-215
               
               
               Cow position:chr7:1398177-1398389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:1-222
               
               
               Cow position:chr7:60761471-60761244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 154

               
               
               Conread position:1-314
               
               
               Cow position:chr7:61425657-61425357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:1-316
               
               
               Cow position:chr7:48335365-48335680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 158

               
               
               Conread position:1-330
               
               
               Cow position:chr7:40622050-40621713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:1-352
               
               
               Cow position:chr7:42222330-42222676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:1-362
               
               
               Cow position:chr7:40192858-40192482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 58

               
               
               Conread position:1-438
               
               
               Cow position:chr7:53985890-53986315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:1-438
               
               
               Cow position:chr7:65848963-65849386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:1-443
               
               
               Cow position:chr7:20104914-20105357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 89

               
               
               Conread position:2-424
               
               
               Cow position:chr7:27709558-27709980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 156

               
               
               Conread position:2-443
               
               
               Cow position:chr7:48859403-48859840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:323
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 153

               
               
               Conread position:4-438
               
               
               Cow position:chr7:29378042-29378448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 148

               
               
               Conread position:5-409
               
               
               Cow position:chr7:63547918-63548320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 154

               
               
               Conread position:9-438
               
               
               Cow position:chr7:20289177-20289582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 128

               
               
               Conread position:11-331
               
               
               Cow position:chr7:18858437-18858117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):59, 138

               
               
               Conread position:11-420
               
               
               Cow position:chr7:37367081-37366695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 48

               
               
               Conread position:11-432
               
               
               Cow position:chr7:58841746-58841327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:11-438
               
               
               Cow position:chr7:34670211-34669786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:316
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):66, 146

               
               
               Conread position:35-438
               
               
               Cow position:chr7:54712487-54712085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:37-274
               
               
               Cow position:chr7:66335687-66335924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:64-390
               
               
               Cow position:chr7:23679555-23679877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):138, 82

               
               
               Conread position:67-442
               
               
               Cow position:chr7:32894213-32894590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:67-443
               
               
               Cow position:chr7:28917124-28916738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:72-252
               
               
               Cow position:chr7:48205075-48205243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:73-445
               
               
               Cow position:chr7:19399655-19400012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 10

               
               
               Conread position:78-309
               
               
               Cow position:chr7:23131618-23131395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):124, 9

               
               
               Conread position:78-329
               
               
               Cow position:chr7:45955949-45955705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):124, 69

               
               
               Conread position:79-257
               
               
               Cow position:chr7:67761401-67761225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):7, 69

               
               
               Conread position:105-440
               
               
               Cow position:chr7:65618246-65618577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):97, 129

               
               
               Conread position:1-164
               
               
               Cow position:chr8:19369413-19369574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 52

               
               
               Conread position:1-222
               
               
               Cow position:chr8:6409500-6409723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 154

               
               
               Conread position:1-239
               
               
               Cow position:chr8:54158806-54158566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 157

               
               
               Conread position:1-269
               
               
               Cow position:chr8:38248629-38248888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):201, 71

               
               
               Conread position:1-319
               
               
               Cow position:chr8:8480866-8481189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 155

               
               
               Conread position:1-331
               
               
               Cow position:chr8:32720047-32719727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:1-427
               
               
               Cow position:chr8:22103123-22103536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 76

               
               
               Conread position:1-438
               
               
               Cow position:chr8:9985669-9985232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:1-438
               
               
               Cow position:chr8:27369161-27368735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 80

               
               
               Conread position:2-215
               
               
               Cow position:chr8:32326741-32326525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 131

               
               
               Conread position:2-328
               
               
               Cow position:chr8:45686359-45686681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):79, 89

               
               
               Conread position:2-337
               
               
               Cow position:chr8:31886817-31886476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 128

               
               
               Conread position:3-438
               
               
               Cow position:chr8:21078612-21078174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 144

               
               
               Conread position:20-412
               
               
               Cow position:chr8:51877876-51878256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:32-324
               
               
               Cow position:chr8:49265257-49265557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 127

               
               
               Conread position:54-442
               
               
               Cow position:chr8:1834938-1834540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:285
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:57-329
               
               
               Cow position:chr8:47328356-47328090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):145, 21

               
               
               Conread position:61-370
               
               
               Cow position:chr8:59642494-59642796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:62-330
               
               
               Cow position:chr8:55926202-55925944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):140, 14

               
               
               Conread position:71-342
               
               
               Cow position:chr8:39721663-39721397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):131, 76

               
               
               Conread position:78-326
               
               
               Cow position:chr8:48775810-48775565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:78-432
               
               
               Cow position:chr8:47342728-47342378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:78-438
               
               
               Cow position:chr8:10699473-10699819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:79-438
               
               
               Cow position:chr8:9624749-9624402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:82-448
               
               
               Cow position:chr8:39936498-39936129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:1-301
               
               
               Cow position:chr9:25502567-25502273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):167, 72

               
               
               Conread position:1-324
               
               
               Cow position:chr9:34762887-34762565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 142

               
               
               Conread position:1-327
               
               
               Cow position:chr9:13845703-13846024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):77, 55

               
               
               Conread position:1-330
               
               
               Cow position:chr9:24850212-24850537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:1-359
               
               
               Cow position:chr9:52725253-52724893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 76

               
               
               Conread position:1-411
               
               
               Cow position:chr9:5622059-5621656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:1-438
               
               
               Cow position:chr9:417083-417515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:2-331
               
               
               Cow position:chr9:12183712-12184041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 145

               
               
               Conread position:2-421
               
               
               Cow position:chr9:41318008-41317570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 145

               
               
               Conread position:2-443
               
               
               Cow position:chr9:2223807-2223381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 139

               
               
               Conread position:11-312
               
               
               Cow position:chr9:16745646-16745953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 147

               
               
               Conread position:11-330
               
               
               Cow position:chr9:47875986-47875654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):75, 39

               
               
               Conread position:11-423
               
               
               Cow position:chr9:2858509-2858923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 140

               
               
               Conread position:17-317
               
               
               Cow position:chr9:8779261-8778956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):61, 138

               
               
               Conread position:17-383
               
               
               Cow position:chr9:49271358-49271001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):185, 48

               
               
               Conread position:32-438
               
               
               Cow position:chr9:64050561-64050159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:65-443
               
               
               Cow position:chr9:34093399-34093002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 232

               
               
               Conread position:76-379
               
               
               Cow position:chr9:50544581-50544290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):197, 71

               
               
               Conread position:79-330
               
               
               Cow position:chr9:8950955-8951196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:79-331
               
               
               Cow position:chr9:10666975-10666730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):123, 7

               
               
               Conread position:92-317
               
               
               Cow position:chr9:1751399-1751616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:92-438
               
               
               Cow position:chr9:32396006-32396350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 55

               
               
               Conread position:92-443
               
               
               Cow position:chr9:11299628-11299292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:93-326
               
               
               Cow position:chr9:33847013-33846785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:93-438
               
               
               Cow position:chr9:30189160-30189514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:98-236
               
               
               Cow position:chr9:59434970-59434836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:1-251
               
               
               Cow position:chrX:23254112-23254372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):80, 156

               
               
               Conread position:1-309
               
               
               Cow position:chrX:2186353-2186041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):44, 162

               
               
               Conread position:1-317
               
               
               Cow position:chrX:35926049-35925742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 151

               
               
               Conread position:1-318
               
               
               Cow position:chrX:13245690-13245365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 157

               
               
               Conread position:1-419
               
               
               Cow position:chrX:25338280-25337850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:1-437
               
               
               Cow position:chrX:11675158-11674713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 146

               
               
               Conread position:1-438
               
               
               Cow position:chrX:9910678-9911117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):273, 55

               
               
               Conread position:1-438
               
               
               Cow position:chrX:11982230-11981775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:2-322
               
               
               Cow position:chrX:3147293-3146966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 152

               
               
               Conread position:2-365
               
               
               Cow position:chrX:21816360-21815985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:2-441
               
               
               Cow position:chrX:24201273-24200849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:3-444
               
               
               Cow position:chrX:25848995-25848562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 51

               
               
               Conread position:5-309
               
               
               Cow position:chrX:12688997-12689289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 79

               
               
               Conread position:7-438
               
               
               Cow position:chrX:2147431-2146972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:32-253
               
               
               Cow position:chrX:38999917-38999682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:56-432
               
               
               Cow position:chrX:40826720-40827087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:57-317
               
               
               Cow position:chrX:21642452-21642703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):145, 22

               
               
               Conread position:67-356
               
               
               Cow position:chrX:17725995-17725712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:68-331
               
               
               Cow position:chrX:40789224-40788964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:69-435
               
               
               Cow position:chrX:40557663-40558019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:71-410
               
               
               Cow position:chrX:12826761-12826429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:72-389
               
               
               Cow position:chrX:35273368-35273045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:75-312
               
               
               Cow position:chrX:281134-280914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:76-311
               
               
               Cow position:chrX:20791810-20792037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:76-330
               
               
               Cow position:chrX:6563530-6563274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):126, 71

               
               
               Conread position:76-331
               
               
               Cow position:chrX:30862320-30862063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:78-326
               
               
               Cow position:chrX:13382337-13382090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:78-438
               
               
               Cow position:chrX:31250394-31250046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 69

               
               
               Conread position:78-443
               
               
               Cow position:chrX:1616035-1616404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 71

               
               
               Conread position:79-332
               
               
               Cow position:chrX:40035436-40035693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:79-395
               
               
               Cow position:chrX:45414295-45414605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 7

               
               
               Conread position:81-443
               
               
               Cow position:chrX:40269492-40269123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:83-321
               
               
               Cow position:chrX:10959394-10959631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 69

               
               
               Conread position:86-443
               
               
               Cow position:chrX:14883959-14884315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:89-443
               
               
               Cow position:chrX:35387906-35388260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16
Conread position:	1-233
Cow position:	chr1:42174517-42174753 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	178
Alignm E-value:	6e-34
Alignm gaps (pig, cow):	77, 154
Conread position:	1-299
Cow position:	chr1:34892630-34892339 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	214
Alignm E-value:	1e-38
Alignm gaps (pig, cow):	117, 72
Conread position:	1-303
Cow position:	chr1:54162733-54163041 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	231
Alignm E-value:	0
Alignm gaps (pig, cow):	80, 153
Conread position:	1-312
Cow position:	chr1:28284647-28284334 (view UCSC Genome Browser custom track)
Alignm length:	328
Alignm identity:	226
Alignm E-value:	4e-30
Alignm gaps (pig, cow):	77, 156
Conread position:	1-327
Cow position:	chr1:86325534-86325866 (view UCSC Genome Browser custom track)
Alignm length:	338
Alignm identity:	231
Alignm E-value:	3e-38
Alignm gaps (pig, cow):	69, 154
Conread position:	1-340
Cow position:	chr1:64479903-64480245 (view UCSC Genome Browser custom track)
Alignm length:	347
Alignm identity:	243
Alignm E-value:	0
Alignm gaps (pig, cow):	76, 277
Conread position:	1-348
Cow position:	chr1:64099206-64099539 (view UCSC Genome Browser custom track)
Alignm length:	350
Alignm identity:	260
Alignm E-value:	0
Alignm gaps (pig, cow):	200, 81
Conread position:	1-358
Cow position:	chr1:59910425-59910064 (view UCSC Genome Browser custom track)
Alignm length:	369
Alignm identity:	246
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	78, 152
Conread position:	1-362
Cow position:	chr1:1825853-1825489 (view UCSC Genome Browser custom track)
Alignm length:	376
Alignm identity:	256
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	68, 196
Conread position:	1-421
Cow position:	chr1:17291567-17291989 (view UCSC Genome Browser custom track)
Alignm length:	441
Alignm identity:	306
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	29, 159
Conread position:	1-424
Cow position:	chr1:18223797-18224234 (view UCSC Genome Browser custom track)
Alignm length:	446
Alignm identity:	316
Alignm E-value:	0
Alignm gaps (pig, cow):	76, 160
Conread position:	1-437
Cow position:	chr1:22516616-22516185 (view UCSC Genome Browser custom track)
Alignm length:	453
Alignm identity:	314
Alignm E-value:	0
Alignm gaps (pig, cow):	80, 136
Conread position:	1-438
Cow position:	chr1:52206751-52206326 (view UCSC Genome Browser custom track)
Alignm length:	452
Alignm identity:	331
Alignm E-value:	0
Alignm gaps (pig, cow):	77, 145
Conread position:	1-443
Cow position:	chr1:72181876-72181468 (view UCSC Genome Browser custom track)
Alignm length:	447
Alignm identity:	314
Alignm E-value:	0
Alignm gaps (pig, cow):	200, 40
Conread position:	1-444
Cow position:	chr1:23624234-23623779 (view UCSC Genome Browser custom track)
Alignm length:	466
Alignm identity:	339
Alignm E-value:	0
Alignm gaps (pig, cow):	77, 88
Conread position:	2-426
Cow position:	chr1:30041807-30041375 (view UCSC Genome Browser custom track)
Alignm length:	440
Alignm identity:	305
Alignm E-value:	0
Alignm gaps (pig, cow):	67, 317
Conread position:	3-307
Cow position:	chr1:25886005-25886310 (view UCSC Genome Browser custom track)
Alignm length:	318
Alignm identity:	238
Alignm E-value:	0
Alignm gaps (pig, cow):	27, 64
Conread position:	3-443
Cow position:	chr1:92048892-92048459 (view UCSC Genome Browser custom track)
Alignm length:	452
Alignm identity:	308
Alignm E-value:	6.02558e-44
Alignm gaps (pig, cow):	161, 68
Conread position:	11-311
Cow position:	chr1:29648345-29648643 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	202
Alignm E-value:	9e-27
Alignm gaps (pig, cow):	60, 138
Conread position:	16-438
Cow position:	chr1:31377883-31378292 (view UCSC Genome Browser custom track)
Alignm length:	430
Alignm identity:	296
Alignm E-value:	0
Alignm gaps (pig, cow):	146, 54