• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ovi1-UMC-pd3ov4-004-c08
        

               
Conread position:
               
1-165
               

               
Cow position:
               
chr10:44668324-44668167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr10:39244936-39244712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
140, 93
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr10:1004643-1004875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr10:36425110-36424882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 121
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr10:46000152-45999936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
148, 90
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr10:48479435-48479189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
171, 130
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr10:28103830-28103569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
2-115
               

               
Cow position:
               
chr10:68792902-68793015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr10:7507006-7506775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
128, 140
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr10:57993924-57993687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
44, 143
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr10:58264586-58264325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chr10:57503703-57504086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr10:29291196-29291416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr10:58602770-58602987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
168, 40
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr10:46451748-46451510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr10:68794115-68794351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr10:23873405-23873182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr10:31385604-31385863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
120, 131
               

               
Conread position:
               
13-263
               

               
Cow position:
               
chr10:31543507-31543751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
156, 46
               

               
Conread position:
               
19-247
               

               
Cow position:
               
chr10:8861127-8861364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
123, 212
               

               
Conread position:
               
25-223
               

               
Cow position:
               
chr10:49680204-49680410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
148, 33
               

               
Conread position:
               
28-238
               

               
Cow position:
               
chr10:34137116-34136901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr11:54265003-54265159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
140, 92
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr11:71294800-71294963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr11:31206253-31206421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr11:81336981-81336824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 46
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr11:48930434-48930207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
176, 91
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr11:80003024-80003275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
2-127
               

               
Cow position:
               
chr11:77193738-77193614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr11:29014382-29014609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
141, 119
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr11:27666189-27665955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
98, 134
               

               
Conread position:
               
6-222
               

               
Cow position:
               
chr11:53270531-53270310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
135, 83
               

               
Conread position:
               
10-215
               

               
Cow position:
               
chr11:16653398-16653204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
26-171
               

               
Cow position:
               
chr11:60008214-60008358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
99, 42
               

               
Conread position:
               
29-247
               

               
Cow position:
               
chr11:54668830-54669062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr11:21922470-21922697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
103, 72
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr12:30506962-30506812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr12:25901740-25901519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr12:48422136-48421926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 55
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr12:11352542-11352295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
140, 53
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr12:10798605-10798350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
2-246
               

               
Cow position:
               
chr12:10440722-10440955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
174, 12
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr12:27437694-27437471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 127
               

               
Conread position:
               
32-260
               

               
Cow position:
               
chr12:38748309-38748079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
34-219
               

               
Cow position:
               
chr12:10202282-10202099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
110, 94
               

               
Conread position:
               
37-223
               

               
Cow position:
               
chr12:42466810-42467003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
106, 91
               

               
Conread position:
               
38-223
               

               
Cow position:
               
chr12:10760871-10760679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 93
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr13:51682160-51682286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr13:22976961-22976733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
140, 52
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr13:16342926-16342689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr13:6178382-6178618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
139, 116
               

               
Conread position:
               
3-172
               

               
Cow position:
               
chr13:46131695-46131528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
139, 64
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr13:4441536-4441297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
62, 95
               

               
Conread position:
               
5-263
               

               
Cow position:
               
chr13:30772885-30772614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
138, 21
               

               
Conread position:
               
11-166
               

               
Cow position:
               
chr13:24739961-24740113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
131, 15
               

               
Conread position:
               
14-211
               

               
Cow position:
               
chr13:25981528-25981330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr14:25393830-25393704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr14:25952538-25952757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
140, 36
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr14:19542358-19542596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr14:35434828-35435045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
31-223
               

               
Cow position:
               
chr14:7600176-7600373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
32-222
               

               
Cow position:
               
chr14:25346461-25346270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
110, 78
               

               
Conread position:
               
39-246
               

               
Cow position:
               
chr14:43693798-43694015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 89
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr15:26547006-26547167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
143, 67
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr15:18834520-18834737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 13
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr15:13691309-13691530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
167, 128
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr15:16455976-16455739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 136
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr15:3539310-3539546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
172, 66
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr15:28259493-28259266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr15:19404669-19404420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
163, 140
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr15:8062316-8062573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr15:40991487-40991768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
121, 140
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr15:32325421-32325190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
14-235
               

               
Cow position:
               
chr15:30822529-30822759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
15-232
               

               
Cow position:
               
chr15:38818351-38818576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
23-223
               

               
Cow position:
               
chr15:38634954-38634743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
40-226
               

               
Cow position:
               
chr15:42847690-42847505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 94
               

               
Conread position:
               
59-223
               

               
Cow position:
               
chr15:41068965-41069130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
108, 82
               

               
Conread position:
               
258-379
               

               
Cow position:
               
chr15:50253703-50253824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr16:47341488-47341271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
142, 59
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr16:17003749-17003975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
140, 52
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr16:32585885-32585665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
140, 92
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr16:46029913-46030149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
141, 73
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr16:14364892-14364648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
158, 130
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr16:25937847-25938200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
167, 72
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr16:15093255-15093031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
166, 128
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr16:28466942-28466717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
140, 48
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr16:33043554-33043386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr16:48283343-48283558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
132, 11
               

               
Conread position:
               
36-219
               

               
Cow position:
               
chr16:13831576-13831381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 95
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr17:24337205-24337418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 94
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr17:5226485-5226268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr17:35457964-35458184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr17:14009293-14009056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr17:10041056-10040816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
140, 53
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr17:14303668-14303406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
31-203
               

               
Cow position:
               
chr17:28403971-28403792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr18:21767035-21766872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr18:54166124-54165898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chr18:17028202-17028412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
141, 115
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr18:17227979-17227748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr18:44048833-44049070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
170, 70
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr18:39740250-39740475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
162, 134
               

               
Conread position:
               
15-231
               

               
Cow position:
               
chr18:23826961-23826742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
128, 48
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr19:23908161-23907941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
164, 93
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr19:48218072-48217841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
11-263
               

               
Cow position:
               
chr19:5551893-5551628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
131, 255
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr2:69638744-69638620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr2:79907125-79906961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr2:48441065-48440890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr2:16123085-16122872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
67, 130
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr2:32406117-32405886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
140, 130
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr2:62563669-62563438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
128, 58
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr2:79075692-79075463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr2:51191962-51191722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr2:11534012-11534240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr2:38383888-38384121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr2:6176570-6176820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
145, 45
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr2:61078478-61078726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr2:10362903-10362682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
140, 11
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chr2:1704583-1704817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
102, 89
               

               
Conread position:
               
39-223
               

               
Cow position:
               
chr2:21013928-21014110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
104, 47
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr20:13023166-13022939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
140, 116
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr20:13817887-13818124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 94
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr20:6869723-6869949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 48
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr20:7213166-7212929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 5
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr20:8869223-8868972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 94
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr20:4874826-4874702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr20:12684211-12683956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr20:32347926-32348137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
14-238
               

               
Cow position:
               
chr20:7934014-7934242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 8
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr21:12560363-12560194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
140, 128
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr21:665052-664842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr21:3649115-3648898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr21:20575393-20575170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
140, 81
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr21:37341782-37341554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
141, 194
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:30192093-30191853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
130, 65
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr21:13160139-13160378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
138, 115
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr21:7646536-7646317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
115, 74
               

               
Conread position:
               
11-245
               

               
Cow position:
               
chr21:22944824-22945066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
132, 117
               

               
Conread position:
               
59-219
               

               
Cow position:
               
chr21:30644839-30644675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 82
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr22:12086403-12086230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
116, 144
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr22:18843536-18843313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr22:20912259-20912040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr22:32529427-32529657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
163, 64
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr22:23228279-23228049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 24
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr22:33603309-33603531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr22:40745515-40745735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr22:28138643-28138893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
11-219
               

               
Cow position:
               
chr22:3288754-3288967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
162, 83
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr22:13997774-13997993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
131, 117
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr23:37639509-37639349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 100
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr23:40920593-40920809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
167, 57
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr23:15289794-15290016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr23:35270543-35270773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
163, 25
               

               
Conread position:
               
3-171
               

               
Cow position:
               
chr23:31026261-31026095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
138, 54
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr23:5418663-5418898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr23:25566200-25566438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
138, 114
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr23:40539071-40538809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 47
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr23:777942-777718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 121
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr23:19913764-19913543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
112, 50
               

               
Conread position:
               
10-246
               

               
Cow position:
               
chr23:9420938-9420697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
127, 58
               

               
Conread position:
               
14-229
               

               
Cow position:
               
chr23:26184344-26184119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
25, 123
               

               
Conread position:
               
53-222
               

               
Cow position:
               
chr23:4602236-4602058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
89, 65
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr24:37894969-37894841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
129, 55
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr24:23820358-23820200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
139, 69
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr24:7030157-7029995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 136
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr24:29070195-29069970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
142, 95
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr24:5376095-5375865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
165, 138
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr24:41242001-41242233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 155
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr24:19784747-19784987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr24:16162801-16163024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr24:31393810-31393590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
34-221
               

               
Cow position:
               
chr24:10460376-10460573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
53-234
               

               
Cow position:
               
chr24:30191677-30191867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 81
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr25:23671883-23671639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
135, 225
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr25:18262444-18262174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
140, 116
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr25:23772220-23771999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr26:16510825-16510989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
140, 119
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr26:15437700-15437468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
120, 91
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr26:29278513-29278281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
141, 130
               

               
Conread position:
               
2-171
               

               
Cow position:
               
chr26:9641360-9641529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
139, 54
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chr26:11304152-11304370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
39-223
               

               
Cow position:
               
chr26:15940544-15940353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 79
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr27:17924350-17924582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
130, 211
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr27:20012662-20012882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr27:16100054-16100291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr27:9917984-9917747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 62
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr27:28685103-28684849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr27:8589582-8589797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
170, 112
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr28:23155924-23156061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr28:11783711-11783555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
113, 142
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr28:7595367-7595130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
140, 70
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr28:28780046-28780280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
140, 133
               

               
Conread position:
               
2-162
               

               
Cow position:
               
chr28:24330454-24330297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr28:16965862-16966115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
107, 161
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr28:6871280-6871495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
132, 102
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr28:22202154-22202374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
158, 93
               

               
Conread position:
               
48-223
               

               
Cow position:
               
chr28:6508262-6508449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr29:22332499-22332377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr29:13608641-13608437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
140, 116
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr29:7749873-7749645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
141, 130
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr29:30844750-30844981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 43
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr29:34683263-34683042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
114, 69
               

               
Conread position:
               
6-224
               

               
Cow position:
               
chr29:34848906-34849131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
135, 131
               

               
Conread position:
               
30-223
               

               
Cow position:
               
chr29:27123335-27123131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
46-289
               

               
Cow position:
               
chr29:36100800-36101060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
122, 82
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr3:4555679-4555533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr3:46134906-46134750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
87, 127
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr3:16622039-16621833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
135, 154
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:58429301-58429082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
116, 144
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr3:54570610-54570825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
141, 82
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:15329442-15329213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:16170040-16169812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:24646170-24646401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:35144786-35145009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
143, 93
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:73827053-73827282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
167, 134
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr3:63199483-63199704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
141, 26
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr3:67927194-67927441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
109, 117
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr3:64435847-64435586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
141, 130
               

               
Conread position:
               
2-148
               

               
Cow position:
               
chr3:75254456-75254306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 62
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr3:31924626-31924409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
91, 97
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr3:13478506-13478727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
143, 34
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr3:22850712-22850472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
129, 57
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr3:37808119-37807898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
139, 128
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr3:75163233-75163010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
37, 140
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr3:54554427-54554640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
134, 158
               

               
Conread position:
               
23-234
               

               
Cow position:
               
chr3:76928271-76928478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
117, 95
               

               
Conread position:
               
30-246
               

               
Cow position:
               
chr3:54051562-54051337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
39-223
               

               
Cow position:
               
chr3:17681509-17681688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
110, 89
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr4:30223314-30223144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr4:20909919-20910113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr4:5496074-5496300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
142, 117
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr4:6381301-6381070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
142, 130
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr4:10871422-10871196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr4:13920114-13919884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
131, 93
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr4:59118188-59117969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr4:35181405-35181633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
142, 16
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr4:27349176-27349407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 66
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr4:3244969-3245222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
140, 102
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr4:20290997-20291225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
170, 132
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr4:15120242-15120474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr4:48404256-48404027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
96, 136
               

               
Conread position:
               
9-228
               

               
Cow position:
               
chr4:19151667-19151440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
134, 5
               

               
Conread position:
               
10-247
               

               
Cow position:
               
chr4:51289721-51289961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
132, 36
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr4:37835949-37835740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 107
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr4:11543149-11543358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
123, 44
               

               
Conread position:
               
23-216
               

               
Cow position:
               
chr4:20464901-20465103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
26-228
               

               
Cow position:
               
chr4:989011-988823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr5:63818109-63817887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
148, 127
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr5:7659612-7659391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 129
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr5:57733613-57733826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 156
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr5:11955468-11955241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
10, 138
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr5:38970724-38970947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
114, 93
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr5:55985485-55985255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr5:70768585-70768815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
129, 39
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr5:18582839-18583081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
140, 116
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr5:44491643-44491906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 121
               

               
Conread position:
               
2-126
               

               
Cow position:
               
chr5:35708340-35708215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
7-247
               

               
Cow position:
               
chr5:65053687-65053933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
111, 7
               

               
Conread position:
               
9-219
               

               
Cow position:
               
chr5:4989628-4989846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
137, 124
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr5:18883045-18882835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
31-286
               

               
Cow position:
               
chr5:51761128-51760872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
39-248
               

               
Cow position:
               
chr5:7780468-7780678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
48-223
               

               
Cow position:
               
chr5:57147687-57147875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
55-246
               

               
Cow position:
               
chr5:42787019-42786811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
75-235
               

               
Cow position:
               
chr5:51994010-51994181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr6:30946001-30945776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr6:37485276-37485496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 128
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr6:40157127-40156903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 55
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr6:12516182-12516390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
145, 139
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr6:28078699-28078486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:49821578-49821832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
139, 228
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr6:59068606-59068372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
56, 132
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr6:12511613-12511839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
120, 53
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr6:30892595-30892375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
132, 119
               

               
Conread position:
               
15-135
               

               
Cow position:
               
chr6:59668138-59668258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chr6:3434450-3434657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 107
               

               
Conread position:
               
46-216
               

               
Cow position:
               
chr6:47156392-47156573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
46-224
               

               
Cow position:
               
chr6:59276797-59276608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr7:26479150-26478931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
62, 82
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr7:31611096-31611326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr7:52532763-52532527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
140, 81
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr7:31890353-31890591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr7:22736419-22736177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
142, 130
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr7:31007019-31006778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
134, 65
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr7:53406046-53406309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
141, 130
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr7:35807251-35807458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr7:57273069-57272814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 134
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr7:26828135-26827902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr7:34538895-34539124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
150, 91
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr7:53415327-53415111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
14-228
               

               
Cow position:
               
chr7:42494524-42494300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
115, 130
               

               
Conread position:
               
14-233
               

               
Cow position:
               
chr7:26698202-26697974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
121, 93
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr8:53942659-53942521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr8:18984575-18984348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
142, 67
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr8:21945745-21945975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
141, 130
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr8:29967284-29967508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
164, 52
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr8:60055464-60055213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
110, 103
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr8:23849849-23850107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr8:51919897-51919635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
114, 120
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr8:4999345-4999595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
14-223
               

               
Cow position:
               
chr8:49393002-49392791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
161, 117
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr8:26928908-26928693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
126, 110
               

               
Conread position:
               
24-215
               

               
Cow position:
               
chr8:59727926-59728124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
149, 93
               

               
Conread position:
               
31-222
               

               
Cow position:
               
chr8:43974676-43974483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 105
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr9:55355757-55355632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr9:41904150-41903928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
175, 56
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr9:39236455-39236688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr9:10310940-10311202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
2-129
               

               
Cow position:
               
chr9:26862613-26862486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr9:22398183-22398017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
139, 102
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr9:55262534-55262767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
138, 180
               

               
Conread position:
               
4-167
               

               
Cow position:
               
chr9:15962233-15962397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
7-263
               

               
Cow position:
               
chr9:59588532-59588270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
134, 103
               

               
Conread position:
               
8-166
               

               
Cow position:
               
chr9:58655080-58654922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 134
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chr9:16253005-16253219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
133, 85
               

               
Conread position:
               
11-234
               

               
Cow position:
               
chr9:12890206-12889979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 107
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr9:3204163-3203944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
31-223
               

               
Cow position:
               
chr9:20700258-20700060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
33-263
               

               
Cow position:
               
chr9:38350273-38350028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
110, 98
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chrX:37067361-37067528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chrX:13852499-13852716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
140, 103
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chrX:31386217-31386443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chrX:32773596-32773394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chrX:5648129-5647908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
140, 65
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chrX:4424999-4425230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
140, 120
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chrX:10462656-10462887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
167, 140
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chrX:17265067-17264844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
134, 58
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chrX:25707800-25707577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
140, 57
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chrX:37139641-37139869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 56
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chrX:38140021-38139813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
140, 93
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:40142197-40141941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
142, 127
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chrX:17200741-17200896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
138, 118
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chrX:36044375-36044158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
163, 8
               

               
Conread position:
               
11-216
               

               
Cow position:
               
chrX:18293973-18294178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
31-223
               

               
Cow position:
               
chrX:34134235-34134430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
40-219
               

               
Cow position:
               
chrX:6570177-6570354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
135, 74