Cow genome map
| Conread name: | Pig1-120J09 |
| Conread position: | 1-272 |
| Cow position: | chr1:85795758-85795495 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 154 |
| Conread position: | 5-274 |
| Cow position: | chr1:63240511-63240242 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 163 |
| Conread position: | 6-301 |
| Cow position: | chr1:71714303-71714024 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 58, 79 |
| Conread position: | 12-271 |
| Cow position: | chr10:63313254-63313001 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 183 |
| Conread position: | 5-266 |
| Cow position: | chr11:10364915-10365180 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 154 |
| Conread position: | 10-262 |
| Cow position: | chr11:52515984-52515724 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 5-271 |
| Cow position: | chr12:26777650-26777903 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 5-274 |
| Cow position: | chr12:36568546-36568830 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 1-289 |
| Cow position: | chr13:1005330-1005623 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 161 |
| Conread position: | 114-300 |
| Cow position: | chr13:35760968-35760794 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-257 |
| Cow position: | chr14:24683624-24683364 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 88 |
| Conread position: | 3-274 |
| Cow position: | chr14:34354982-34354696 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 60, 157 |
| Conread position: | 32-274 |
| Cow position: | chr14:28378899-28379159 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 1-272 |
| Cow position: | chr15:3276021-3276313 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 161 |
| Conread position: | 1-273 |
| Cow position: | chr15:5198394-5198119 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 62, 161 |
| Conread position: | 5-274 |
| Cow position: | chr15:44210136-44210402 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 1-301 |
| Cow position: | chr16:12248725-12248424 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 171 |
| Conread position: | 2-273 |
| Cow position: | chr16:48411718-48411451 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 161 |
| Conread position: | 5-274 |
| Cow position: | chr16:23300809-23300536 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 5-302 |
| Cow position: | chr16:43802399-43802099 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 60, 114 |
| Conread position: | 1-287 |
| Cow position: | chr17:14249451-14249754 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 63, 127 |
| Conread position: | 5-274 |
| Cow position: | chr17:38617289-38617013 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 45-274 |
| Cow position: | chr18:55137318-55137548 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 4-252 |
| Cow position: | chr19:33641962-33641722 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 6-274 |
| Cow position: | chr19:442997-443260 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 155 |
| Conread position: | 1-272 |
| Cow position: | chr2:26129531-26129819 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 5-274 |
| Cow position: | chr2:14825825-14825547 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 5-301 |
| Cow position: | chr2:12331235-12330944 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 70, 94 |
| Conread position: | 21-295 |
| Cow position: | chr2:70776548-70776829 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 141 |
| Conread position: | 1-272 |
| Cow position: | chr20:5502914-5503178 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 161 |
| Conread position: | 1-274 |
| Cow position: | chr20:11720529-11720251 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 162 |
| Conread position: | 5-271 |
| Cow position: | chr20:1580700-1580958 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 12-268 |
| Cow position: | chr20:12241299-12241551 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 150 |
| Conread position: | 5-266 |
| Cow position: | chr21:33997621-33997879 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 1-295 |
| Cow position: | chr22:8299914-8299623 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 63, 162 |
| Conread position: | 5-271 |
| Cow position: | chr22:15049699-15049422 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 188 |
| Conread position: | 5-274 |
| Cow position: | chr22:25943018-25942734 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 59, 129 |
| Conread position: | 5-299 |
| Cow position: | chr22:24066834-24067129 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 6-274 |
| Cow position: | chr22:5338063-5338321 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 58, 121 |
| Conread position: | 66-271 |
| Cow position: | chr22:10330836-10330641 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 1-272 |
| Cow position: | chr25:12753370-12753641 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 62, 161 |
| Conread position: | 7-301 |
| Cow position: | chr25:10137365-10137070 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 157 |
| Conread position: | 11-274 |
| Cow position: | chr25:18487008-18486746 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 84, 60 |
| Conread position: | 1-273 |
| Cow position: | chr26:17428663-17428931 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 100 |
| Conread position: | 3-301 |
| Cow position: | chr28:26103270-26102973 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 5-274 |
| Cow position: | chr28:28076924-28077202 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 158 |
| Conread position: | 7-274 |
| Cow position: | chr28:8022567-8022853 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 57, 155 |
| Conread position: | 1-273 |
| Cow position: | chr29:23980502-23980221 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 146 |
| Conread position: | 1-273 |
| Cow position: | chr29:35076905-35076640 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 161 |
| Conread position: | 1-273 |
| Cow position: | chr3:43189578-43189847 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 1-296 |
| Cow position: | chr3:597809-597503 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 62, 188 |
| Conread position: | 290-493 |
| Cow position: | chr3:10341595-10341378 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-274 |
| Cow position: | chr4:20243675-20243390 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 58, 161 |
| Conread position: | 1-274 |
| Cow position: | chr4:48798162-48798437 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 5-265 |
| Cow position: | chr4:4672933-4673193 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 5-274 |
| Cow position: | chr4:23451507-23451792 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 1-273 |
| Cow position: | chr5:8178751-8178469 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 161 |
| Conread position: | 5-295 |
| Cow position: | chr5:4166237-4165939 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 92, 140 |
| Conread position: | 93-274 |
| Cow position: | chr5:15455276-15455085 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 109, 61 |
| Conread position: | 1-274 |
| Cow position: | chr6:14839442-14839707 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 61, 136 |
| Conread position: | 5-274 |
| Cow position: | chr6:26697335-26697603 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 6-273 |
| Cow position: | chr6:49442691-49442418 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 56, 155 |
| Conread position: | 6-274 |
| Cow position: | chr6:24652893-24652618 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 57, 77 |
| Conread position: | 8-274 |
| Cow position: | chr6:50625185-50624918 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 1-272 |
| Cow position: | chr7:6667341-6667067 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 63, 161 |
| Conread position: | 1-273 |
| Cow position: | chr7:38400669-38400394 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 58, 161 |
| Conread position: | 5-274 |
| Cow position: | chr8:13374093-13373820 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 5-301 |
| Cow position: | chr8:24904848-24904562 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 59, 154 |
| Conread position: | 8-274 |
| Cow position: | chr8:34407815-34407543 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 56, 154 |
| Conread position: | 17-272 |
| Cow position: | chr8:56998461-56998710 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 1-272 |
| Cow position: | chr9:4939832-4940095 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 161 |
| Conread position: | 1-272 |
| Cow position: | chr9:7830233-7830502 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 161 |
| Conread position: | 1-272 |
| Cow position: | chr9:19546180-19545914 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 62, 161 |
| Conread position: | 5-271 |
| Cow position: | chr9:5524680-5524953 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 90, 156 |
| Conread position: | 5-272 |
| Cow position: | chr9:50841104-50840836 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 59, 189 |
| Conread position: | 9-276 |
| Cow position: | chr9:217453-217713 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 86, 98 |
| Conread position: | 9-295 |
| Cow position: | chr9:46667130-46667416 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 5-272 |
| Cow position: | chrX:29083644-29083379 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 12-272 |
| Cow position: | chrX:7444494-7444219 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 90-271 |
| Cow position: | chrX:13178121-13178294 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 64, 0 |