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Cow genome map

           
Conread name:
           
Pig1-34K04
        

               
Conread position:
               
2-164
               

               
Cow position:
               
chr1:73019587-73019423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 129
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr1:34695055-34695294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 172
               

               
Conread position:
               
2-246
               

               
Cow position:
               
chr1:30439204-30439450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 0
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr1:52336600-52336296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 171
               

               
Conread position:
               
2-321
               

               
Cow position:
               
chr1:80157458-80157772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 212
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr1:11855917-11855506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 55
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr1:22631652-22631250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 50
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr1:57744848-57744456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 111
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr1:86704511-86704927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 54
               

               
Conread position:
               
2-419
               

               
Cow position:
               
chr1:41518463-41518050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 59
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr1:81861655-81861252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 49
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr1:70389178-70388954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
95, 117
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr1:50415969-50415657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
282, 18
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr1:17034228-17033826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 48
               

               
Conread position:
               
5-411
               

               
Cow position:
               
chr1:22726660-22727071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 20
               

               
Conread position:
               
8-400
               

               
Cow position:
               
chr1:61537635-61537236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
28-405
               

               
Cow position:
               
chr1:71678124-71677745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
59-397
               

               
Cow position:
               
chr1:20816495-20816835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
226, 126
               

               
Conread position:
               
92-515
               

               
Cow position:
               
chr1:81289733-81290162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 367
               

               
Conread position:
               
124-420
               

               
Cow position:
               
chr1:11017878-11018180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
125, 206
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr10:36513779-36513960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
2-375
               

               
Cow position:
               
chr10:24975451-24975077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 136
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr10:8324748-8324348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 165
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr10:21450813-21450414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr10:63625446-63625852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 54
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr10:68097232-68096827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 179
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr10:25340537-25340946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 184
               

               
Conread position:
               
4-411
               

               
Cow position:
               
chr10:39814009-39813587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 371
               

               
Conread position:
               
22-192
               

               
Cow position:
               
chr10:58599927-58600093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
28-400
               

               
Cow position:
               
chr10:39776595-39776216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 29
               

               
Conread position:
               
85-418
               

               
Cow position:
               
chr10:58600086-58600422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
190, 255
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr11:7118432-7118666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-352
               

               
Cow position:
               
chr11:30121624-30121277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 54
               

               
Conread position:
               
2-391
               

               
Cow position:
               
chr11:12095812-12096217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr11:4054277-4053886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 69
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr11:15126836-15127240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 239
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr11:15994184-15994584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 206
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr11:11590987-11591425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr11:1507193-1506790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
116, 142
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr11:66606709-66606293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr11:20732198-20731797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 48
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr11:27725872-27725475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 102
               

               
Conread position:
               
4-404
               

               
Cow position:
               
chr11:4061847-4061456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 166
               

               
Conread position:
               
15-411
               

               
Cow position:
               
chr11:35571540-35571136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
23-275
               

               
Cow position:
               
chr11:64384959-64385211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
31-321
               

               
Cow position:
               
chr11:21138084-21138376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 171
               

               
Conread position:
               
45-418
               

               
Cow position:
               
chr11:26052456-26052071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
167, 98
               

               
Conread position:
               
2-163
               

               
Cow position:
               
chr12:15949501-15949340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr12:21944425-21944828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 23
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr12:36212559-36212965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
3-427
               

               
Cow position:
               
chr12:33121702-33122119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 75
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr12:35300593-35300359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 34
               

               
Conread position:
               
22-418
               

               
Cow position:
               
chr12:35633179-35632803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
264, 102
               

               
Conread position:
               
48-373
               

               
Cow position:
               
chr12:2284351-2284685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 183
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr13:20572995-20572812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr13:20539751-20539479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
285, 50
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr13:31509005-31509324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 50
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr13:21879716-21879325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr13:562293-561886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr13:11827627-11827220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 52
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr13:34906428-34906244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
169, 20
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr13:1047947-1047641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
206, 53
               

               
Conread position:
               
2-134
               

               
Cow position:
               
chr14:40344280-40344413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr14:44254798-44254627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr14:24993151-24992763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
145, 32
               

               
Conread position:
               
6-391
               

               
Cow position:
               
chr14:30713811-30713417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 0
               

               
Conread position:
               
2-239
               

               
Cow position:
               
chr15:16508833-16509069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
2-333
               

               
Cow position:
               
chr15:9394934-9395262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 225
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chr15:6119381-6119747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 269
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr15:36623688-36623311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 34
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr15:610274-609874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr15:8101423-8101832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr15:45707194-45707476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
124, 19
               

               
Conread position:
               
4-383
               

               
Cow position:
               
chr15:49198399-49198790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 301
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr15:9100051-9100311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
22-304
               

               
Cow position:
               
chr15:49605853-49606120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
264, 124
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr16:25126929-25126755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr16:28374349-28374110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
123, 118
               

               
Conread position:
               
2-338
               

               
Cow position:
               
chr16:49743807-49743473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
2-357
               

               
Cow position:
               
chr16:2237148-2236796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 68
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr16:23365287-23364885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 89
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr16:16229928-16230354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 56
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr16:31587076-31586656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 126
               

               
Conread position:
               
2-418
               

               
Cow position:
               
chr16:51086406-51086831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 32
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr16:21812148-21812327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-400
               

               
Cow position:
               
chr16:9417063-9416666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 191
               

               
Conread position:
               
2-331
               

               
Cow position:
               
chr17:1570198-1569872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 54
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr17:1785812-1785441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 54
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr17:41412038-41412424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr18:4948352-4948768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 54
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr18:26747776-26748047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
3-374
               

               
Cow position:
               
chr18:40343866-40343503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 75
               

               
Conread position:
               
11-398
               

               
Cow position:
               
chr18:14814652-14815039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
304, 117
               

               
Conread position:
               
28-259
               

               
Cow position:
               
chr18:2364017-2363791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 7
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr19:28404158-28403738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 182
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr19:42297716-42297288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
12-284
               

               
Cow position:
               
chr19:42260728-42260465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
49, 131
               

               
Conread position:
               
35-207
               

               
Cow position:
               
chr19:42212742-42212570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-438
               

               
Cow position:
               
chr19:3586702-3586288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
59, 122
               

               
Conread position:
               
2-166
               

               
Cow position:
               
chr2:6964521-6964682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr2:8747291-8747117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr2:66596889-66597079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr2:24470777-24470488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 33
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr2:3839144-3839525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 37
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr2:42330993-42330605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 188
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr2:1433999-1433588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
94, 233
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr2:49632645-49633051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 89
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr2:39973685-39974058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
4-306
               

               
Cow position:
               
chr2:8732897-8733202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 0
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr2:49302158-49301786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 60
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr2:57337814-57338219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 0
               

               
Conread position:
               
19-382
               

               
Cow position:
               
chr2:63519823-63520197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 149
               

               
Conread position:
               
22-418
               

               
Cow position:
               
chr2:5107460-5107070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
349, 59
               

               
Conread position:
               
29-293
               

               
Cow position:
               
chr2:71520806-71520546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
176, 6
               

               
Conread position:
               
36-332
               

               
Cow position:
               
chr2:851361-851064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
33, 154
               

               
Conread position:
               
2-131
               

               
Cow position:
               
chr20:19342186-19342315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr20:8890142-8890356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr20:35144508-35144126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 239
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr20:5076379-5076777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
237, 42
               

               
Conread position:
               
3-392
               

               
Cow position:
               
chr20:24518317-24518693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
284, 102
               

               
Conread position:
               
5-419
               

               
Cow position:
               
chr20:7569718-7569303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 13
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:29255002-29254712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
124, 29
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr21:3805411-3805824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 158
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr21:28987627-28988040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
283, 33
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr21:22462679-22462934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr21:21917968-21918295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 109
               

               
Conread position:
               
5-412
               

               
Cow position:
               
chr21:13299350-13299742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 52
               

               
Conread position:
               
15-391
               

               
Cow position:
               
chr21:37085641-37086019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 125
               

               
Conread position:
               
22-418
               

               
Cow position:
               
chr21:21051226-21051640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 179
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr22:22956998-22956705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 54
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr22:40588722-40589104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 73
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr22:45014727-45014344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr22:13722422-13722000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 29
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr22:1324445-1324866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 54
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr22:8735404-8734982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 12
               

               
Conread position:
               
3-418
               

               
Cow position:
               
chr22:2391222-2390792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 89
               

               
Conread position:
               
3-421
               

               
Cow position:
               
chr22:14088658-14088239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
282, 93
               

               
Conread position:
               
4-412
               

               
Cow position:
               
chr22:3276036-3275626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 226
               

               
Conread position:
               
15-411
               

               
Cow position:
               
chr22:3304326-3303924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 15
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr23:1339470-1339162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 259
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr23:528380-528748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 237
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr23:4515845-4516263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 126
               

               
Conread position:
               
58-283
               

               
Cow position:
               
chr23:2586443-2586667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr24:16907738-16908141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 142
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr24:41004886-41005296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 54
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr24:2711825-2712145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
219, 28
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr24:6667372-6666976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
77, 175
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr24:38640540-38640935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 22
               

               
Conread position:
               
17-407
               

               
Cow position:
               
chr24:13300440-13300046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 47
               

               
Conread position:
               
22-282
               

               
Cow position:
               
chr24:18711778-18712030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
56-280
               

               
Cow position:
               
chr24:32419605-32419382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr25:34667630-34667236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 117
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr25:10635174-10634751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 0
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr25:17656751-17657160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 81
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr25:32448246-32448577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 327
               

               
Conread position:
               
4-420
               

               
Cow position:
               
chr25:18422822-18423240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 114
               

               
Conread position:
               
6-186
               

               
Cow position:
               
chr25:11658501-11658681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
22-380
               

               
Cow position:
               
chr25:170296-169933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
165, 212
               

               
Conread position:
               
55-399
               

               
Cow position:
               
chr25:31513144-31513491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
231, 184
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr26:6497252-6496987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr26:32846423-32846115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 36
               

               
Conread position:
               
17-332
               

               
Cow position:
               
chr27:11433447-11433756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
17-257
               

               
Cow position:
               
chr28:7738558-7738798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
24-418
               

               
Cow position:
               
chr28:27957353-27956958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
102, 174
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr29:19954918-19955299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 34
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr29:16171787-16171371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 120
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr29:32288707-32289132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 38
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr29:32961637-32962041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
17-332
               

               
Cow position:
               
chr29:7656042-7655739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 125
               

               
Conread position:
               
28-422
               

               
Cow position:
               
chr29:33561045-33560646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
5, 159
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:63256348-63256751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 124
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr3:77452526-77452696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr3:49742697-49742905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-314
               

               
Cow position:
               
chr3:49733805-49734113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 260
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr3:35886108-35885704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
4-419
               

               
Cow position:
               
chr3:82930873-82931298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 125
               

               
Conread position:
               
5-139
               

               
Cow position:
               
chr3:54773164-54773295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
15-400
               

               
Cow position:
               
chr3:6713257-6713649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 42
               

               
Conread position:
               
35-296
               

               
Cow position:
               
chr3:84112695-84112956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 176
               

               
Conread position:
               
128-411
               

               
Cow position:
               
chr3:31770513-31770791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
151, 68
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr4:12606837-12606437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 123
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr4:44594320-44593914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 52
               

               
Conread position:
               
2-418
               

               
Cow position:
               
chr4:21973623-21973197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 122
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr4:11916877-11916546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 147
               

               
Conread position:
               
22-293
               

               
Cow position:
               
chr4:47797578-47797850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
97, 113
               

               
Conread position:
               
2-303
               

               
Cow position:
               
chr5:18900121-18900414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr5:34299018-34299417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
232, 73
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr5:42043056-42043469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 82
               

               
Conread position:
               
22-495
               

               
Cow position:
               
chr5:59452209-59451744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
2-155
               

               
Cow position:
               
chr6:65906508-65906356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
2-391
               

               
Cow position:
               
chr6:3573063-3573459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 45
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr6:2580700-2581102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 76
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr6:16767558-16767152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 75
               

               
Conread position:
               
2-418
               

               
Cow position:
               
chr6:6158948-6159364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
39, 129
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chr6:65929520-65929959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
4-375
               

               
Cow position:
               
chr6:67552764-67553132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 217
               

               
Conread position:
               
4-391
               

               
Cow position:
               
chr6:28064277-28064665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 150
               

               
Conread position:
               
5-172
               

               
Cow position:
               
chr6:19018386-19018553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
6-316
               

               
Cow position:
               
chr6:45902604-45902293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 0
               

               
Conread position:
               
7-316
               

               
Cow position:
               
chr6:24625304-24625009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 187
               

               
Conread position:
               
23-384
               

               
Cow position:
               
chr6:25361591-25361959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
262, 82
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr7:59686336-59686535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
182, 50
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr7:24933185-24932931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr7:21241364-21240981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr7:29472826-29473235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 50
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr7:51016617-51017015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 28
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr7:21316526-21316951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 184
               

               
Conread position:
               
3-189
               

               
Cow position:
               
chr7:51193065-51193250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
105, 71
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr7:58336649-58336248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 53
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr7:25137372-25137773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
225, 37
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr7:18895246-18894931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
4-375
               

               
Cow position:
               
chr7:68444973-68445338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
330, 60
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr7:11461757-11461360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 268
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr7:20797080-20796682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 217
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr7:37165241-37165638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 52
               

               
Conread position:
               
5-401
               

               
Cow position:
               
chr7:34211535-34211936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 184
               

               
Conread position:
               
15-336
               

               
Cow position:
               
chr7:48145537-48145854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
23-411
               

               
Cow position:
               
chr7:61624282-61623899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 8
               

               
Conread position:
               
25-388
               

               
Cow position:
               
chr7:21872464-21872827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
274, 103
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr8:44123655-44123942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 51
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr8:47468116-47467878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 54
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr8:51317243-51317540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 183
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr8:29922796-29922501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 54
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr8:45142858-45142464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 101
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr8:47489643-47489251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 79
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr8:12805330-12805750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 250
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr8:39618623-39618413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 120
               

               
Conread position:
               
17-400
               

               
Cow position:
               
chr8:1109767-1110153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 35
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chr8:12104485-12104768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
10, 127
               

               
Conread position:
               
32-391
               

               
Cow position:
               
chr8:32511577-32511224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
94, 126
               

               
Conread position:
               
2-101
               

               
Cow position:
               
chr9:17313711-17313810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr9:63670681-63670971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
77, 54
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr9:17900360-17899965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 217
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr9:20780107-20780505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 282
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr9:128983-128830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
12-206
               

               
Cow position:
               
chr9:51590530-51590727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
17-400
               

               
Cow position:
               
chr9:31113381-31113767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 40
               

               
Conread position:
               
18-383
               

               
Cow position:
               
chr9:1983041-1983414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 108
               

               
Conread position:
               
22-318
               

               
Cow position:
               
chr9:50063704-50063404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 133
               

               
Conread position:
               
31-411
               

               
Cow position:
               
chr9:55797862-55797476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
220, 116
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chrX:47215706-47215433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 54
               

               
Conread position:
               
2-352
               

               
Cow position:
               
chrX:15040428-15040073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 325
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chrX:36838834-36839237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chrX:12464122-12464543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chrX:35938909-35938504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chrX:20512441-20512116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
283, 80
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chrX:24807430-24807062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
281, 118
               

               
Conread position:
               
4-131
               

               
Cow position:
               
chrX:28559754-28559627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chrX:12652371-12651969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 52
               

               
Conread position:
               
4-411
               

               
Cow position:
               
chrX:31979729-31979298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 68
               

               
Conread position:
               
6-398
               

               
Cow position:
               
chrX:14461437-14461838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 0