Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig2-110L12
        

               Conread position:
               1-225
               

               Cow position:
               chr1:3661051-3661262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               68, 74
               

               Conread position:
               1-225
               

               Cow position:
               chr1:12595888-12596107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               68, 164
               

               Conread position:
               2-138
               

               Cow position:
               chr1:79640276-79640412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               105
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               67, 122
               

               Conread position:
               2-148
               

               Cow position:
               chr1:89349977-89349829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               2-166
               

               Cow position:
               chr1:70828915-70828752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               41, 103
               

               Conread position:
               2-168
               

               Cow position:
               chr1:43703421-43703254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               67, 26
               

               Conread position:
               2-168
               

               Cow position:
               chr1:86682548-86682716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               67, 27
               

               Conread position:
               2-183
               

               Cow position:
               chr1:88913332-88913149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               38, 26
               

               Conread position:
               2-188
               

               Cow position:
               chr1:20544310-20544122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               34, 123
               

               Conread position:
               2-189
               

               Cow position:
               chr1:12978694-12978506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               67, 47
               

               Conread position:
               2-202
               

               Cow position:
               chr1:74947105-74947310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               45, 23
               

               Conread position:
               2-221
               

               Cow position:
               chr1:56225481-56225273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               67, 153
               

               Conread position:
               2-224
               

               Cow position:
               chr1:44165098-44164873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               2-224
               

               Cow position:
               chr1:83582921-83583143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               2-225
               

               Cow position:
               chr1:13637651-13637877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               67, 47
               

               Conread position:
               2-225
               

               Cow position:
               chr1:20205042-20204820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               34, 48
               

               Conread position:
               2-225
               

               Cow position:
               chr1:24133048-24133262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               139, 34
               

               Conread position:
               2-225
               

               Cow position:
               chr1:41056690-41056478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               139, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr1:41697070-41696848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 28
               

               Conread position:
               2-225
               

               Cow position:
               chr1:43505541-43505317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               29, 165
               

               Conread position:
               2-225
               

               Cow position:
               chr1:82884381-82884596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               179
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               67, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr1:88652643-88652424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               139, 42
               

               Conread position:
               2-225
               

               Cow position:
               chr1:89509909-89510139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               36, 27
               

               Conread position:
               2-225
               

               Cow position:
               chr1:94404226-94404010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               67, 34
               

               Conread position:
               2-229
               

               Cow position:
               chr1:4414193-4414418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               67, 177
               

               Conread position:
               3-225
               

               Cow position:
               chr1:100450163-100450391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               21, 47
               

               Conread position:
               7-225
               

               Cow position:
               chr1:41004353-41004574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               8-177
               

               Cow position:
               chr1:85647774-85647944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               61, 28
               

               Conread position:
               9-212
               

               Cow position:
               chr1:82443449-82443650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               39, 18
               

               Conread position:
               13-212
               

               Cow position:
               chr1:7350549-7350345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               25-221
               

               Cow position:
               chr1:4291151-4290956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               43, 21
               

               Conread position:
               26-224
               

               Cow position:
               chr1:74084205-74084397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               27-172
               

               Cow position:
               chr1:84235340-84235490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               27-264
               

               Cow position:
               chr1:69415720-69415962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               20, 80
               

               Conread position:
               28-225
               

               Cow position:
               chr1:99095352-99095157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               18, 141
               

               Conread position:
               34-203
               

               Cow position:
               chr1:3243920-3243754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               34-205
               

               Cow position:
               chr1:89083092-89082921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               145
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               36, 13
               

               Conread position:
               36-175
               

               Cow position:
               chr1:80311446-80311310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               33, 13
               

               Conread position:
               42-225
               

               Cow position:
               chr1:99637803-99637986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               12, 37
               

               Conread position:
               53-224
               

               Cow position:
               chr1:56635059-56634893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               16, 66
               

               Conread position:
               59-213
               

               Cow position:
               chr1:40089914-40089757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               68-225
               

               Cow position:
               chr1:14981173-14981325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               73, 97
               

               Conread position:
               1-225
               

               Cow position:
               chr10:34175008-34175233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               67, 172
               

               Conread position:
               1-234
               

               Cow position:
               chr10:40163950-40164175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               28, 41
               

               Conread position:
               2-164
               

               Cow position:
               chr10:39228130-39227966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-168
               

               Cow position:
               chr10:24971628-24971792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               67, 140
               

               Conread position:
               2-177
               

               Cow position:
               chr10:54469411-54469586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               39, 27
               

               Conread position:
               2-180
               

               Cow position:
               chr10:15462474-15462298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               67, 163
               

               Conread position:
               2-188
               

               Cow position:
               chr10:66199726-66199905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               63, 27
               

               Conread position:
               2-210
               

               Cow position:
               chr10:3362599-3362397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               67, 88
               

               Conread position:
               2-212
               

               Cow position:
               chr10:24744528-24744324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               139, 67
               

               Conread position:
               2-223
               

               Cow position:
               chr10:668864-668647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               53, 26
               

               Conread position:
               2-224
               

               Cow position:
               chr10:28152396-28152619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               50, 25
               

               Conread position:
               2-224
               

               Cow position:
               chr10:37415772-37415549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               46, 34
               

               Conread position:
               2-224
               

               Cow position:
               chr10:50558942-50559163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               43, 16
               

               Conread position:
               2-225
               

               Cow position:
               chr10:7366801-7367026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 7
               

               Conread position:
               2-225
               

               Cow position:
               chr10:10134969-10134741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               34, 52
               

               Conread position:
               2-225
               

               Cow position:
               chr10:11966861-11967082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               139, 81
               

               Conread position:
               2-225
               

               Cow position:
               chr10:20553166-20552944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 63
               

               Conread position:
               2-225
               

               Cow position:
               chr10:21422174-21422389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               38, 115
               

               Conread position:
               2-225
               

               Cow position:
               chr10:21657409-21657183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr10:22520179-22520403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 156
               

               Conread position:
               2-225
               

               Cow position:
               chr10:22527919-22528138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               10, 21
               

               Conread position:
               2-225
               

               Cow position:
               chr10:29252150-29251925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr10:31027661-31027881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               41, 181
               

               Conread position:
               2-225
               

               Cow position:
               chr10:34655128-34655348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               67, 165
               

               Conread position:
               2-225
               

               Cow position:
               chr10:45371039-45370818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               67, 169
               

               Conread position:
               2-225
               

               Cow position:
               chr10:56828335-56828558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               37, 20
               

               Conread position:
               2-225
               

               Cow position:
               chr10:59571884-59571661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               139, 13
               

               Conread position:
               3-225
               

               Cow position:
               chr10:13391066-13391290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               3-225
               

               Cow position:
               chr10:37668174-37668397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               66, 213
               

               Conread position:
               3-225
               

               Cow position:
               chr10:54504586-54504365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 19
               

               Conread position:
               3-225
               

               Cow position:
               chr10:58259545-58259752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               61, 19
               

               Conread position:
               3-225
               

               Cow position:
               chr10:63940755-63940538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               52, 25
               

               Conread position:
               8-204
               

               Cow position:
               chr10:31534709-31534525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               9-225
               

               Cow position:
               chr10:31400917-31401135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               169
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               9-225
               

               Cow position:
               chr10:35791908-35791696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               31, 38
               

               Conread position:
               12-225
               

               Cow position:
               chr10:15318857-15318651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               40, 10
               

               Conread position:
               12-225
               

               Cow position:
               chr10:15817819-15818033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 17
               

               Conread position:
               12-225
               

               Cow position:
               chr10:63276366-63276154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               55, 33
               

               Conread position:
               13-225
               

               Cow position:
               chr10:40906290-40906074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               15-222
               

               Cow position:
               chr10:24871860-24871651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               43, 7
               

               Conread position:
               29-225
               

               Cow position:
               chr10:805156-804958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               159
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               23, 106
               

               Conread position:
               35-212
               

               Cow position:
               chr10:37124943-37125126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               35-225
               

               Cow position:
               chr10:19094601-19094411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               15, 133
               

               Conread position:
               41-187
               

               Cow position:
               chr10:10120143-10119996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               10, 6
               

               Conread position:
               41-224
               

               Cow position:
               chr10:20517213-20517027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               31, 12
               

               Conread position:
               44-223
               

               Cow position:
               chr10:29211902-29211723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               79, 60
               

               Conread position:
               46-225
               

               Cow position:
               chr10:59675667-59675843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               95, 124
               

               Conread position:
               63-195
               

               Cow position:
               chr10:24375475-24375342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               75-221
               

               Cow position:
               chr10:5847592-5847736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               66, 57
               

               Conread position:
               1-225
               

               Cow position:
               chr11:30192165-30191938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               175
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               68, 34
               

               Conread position:
               2-148
               

               Cow position:
               chr11:55494668-55494522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               67, 74
               

               Conread position:
               2-166
               

               Cow position:
               chr11:30830625-30830791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-168
               

               Cow position:
               chr11:59155888-59156056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               2-212
               

               Cow position:
               chr11:59702475-59702266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               67, 74
               

               Conread position:
               2-224
               

               Cow position:
               chr11:45646604-45646824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               67, 167
               

               Conread position:
               2-224
               

               Cow position:
               chr11:48474692-48474478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               39, 26
               

               Conread position:
               2-224
               

               Cow position:
               chr11:83043374-83043591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               59, 27
               

               Conread position:
               2-225
               

               Cow position:
               chr11:8428500-8428263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               70, 33
               

               Conread position:
               2-225
               

               Cow position:
               chr11:10620340-10620557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               191, 67
               

               Conread position:
               2-225
               

               Cow position:
               chr11:16342240-16342473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               67, 131
               

               Conread position:
               2-225
               

               Cow position:
               chr11:24937654-24937430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 122
               

               Conread position:
               2-225
               

               Cow position:
               chr11:34121187-34120966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               38, 69
               

               Conread position:
               2-225
               

               Cow position:
               chr11:36182679-36182457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               68, 47
               

               Conread position:
               2-225
               

               Cow position:
               chr11:39115484-39115262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               67, 150
               

               Conread position:
               2-225
               

               Cow position:
               chr11:62150902-62151113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr11:81162444-81162663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               67, 106
               

               Conread position:
               2-225
               

               Cow position:
               chr11:83066486-83066264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               34, 49
               

               Conread position:
               3-183
               

               Cow position:
               chr11:25387054-25386871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               3-225
               

               Cow position:
               chr11:11125651-11125432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               66, 46
               

               Conread position:
               7-186
               

               Cow position:
               chr11:955351-955170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               32, 38
               

               Conread position:
               7-225
               

               Cow position:
               chr11:75355594-75355378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               133, 66
               

               Conread position:
               8-225
               

               Cow position:
               chr11:28644070-28643850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               28, 40
               

               Conread position:
               8-225
               

               Cow position:
               chr11:63516810-63516592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               61, 28
               

               Conread position:
               9-194
               

               Cow position:
               chr11:47851008-47850826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               60, 22
               

               Conread position:
               9-202
               

               Cow position:
               chr11:36672062-36672259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               60, 19
               

               Conread position:
               16-225
               

               Cow position:
               chr11:65431036-65430830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 152
               

               Conread position:
               34-187
               

               Cow position:
               chr11:64077543-64077696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               21, 113
               

               Conread position:
               37-225
               

               Cow position:
               chr11:41577059-41577240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               30, 9
               

               Conread position:
               38-225
               

               Cow position:
               chr11:26483669-26483487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               31, 130
               

               Conread position:
               41-225
               

               Cow position:
               chr11:15504060-15503869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               41-225
               

               Cow position:
               chr11:76114604-76114423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               14, 35
               

               Conread position:
               43-225
               

               Cow position:
               chr11:25165393-25165212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               153
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               9, 144
               

               Conread position:
               45-225
               

               Cow position:
               chr11:84924147-84924330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               53-226
               

               Cow position:
               chr11:57111367-57111541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               16, 67
               

               Conread position:
               57-225
               

               Cow position:
               chr11:6329185-6329014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               12, 119
               

               Conread position:
               75-224
               

               Cow position:
               chr11:29947014-29947157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               1-211
               

               Cow position:
               chr12:35669502-35669703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               68, 135
               

               Conread position:
               2-130
               

               Cow position:
               chr12:37169978-37170102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               2-177
               

               Cow position:
               chr12:34673372-34673547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               139, 112
               

               Conread position:
               2-180
               

               Cow position:
               chr12:44622323-44622144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               2-208
               

               Cow position:
               chr12:45820398-45820597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               44, 34
               

               Conread position:
               2-224
               

               Cow position:
               chr12:18020826-18020603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               139, 128
               

               Conread position:
               2-225
               

               Cow position:
               chr12:5906024-5905806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               69, 112
               

               Conread position:
               2-225
               

               Cow position:
               chr12:15089484-15089243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               44, 83
               

               Conread position:
               2-225
               

               Cow position:
               chr12:17031584-17031370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               67, 44
               

               Conread position:
               2-225
               

               Cow position:
               chr12:18123637-18123435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               67, 27
               

               Conread position:
               2-225
               

               Cow position:
               chr12:18420954-18421178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 49
               

               Conread position:
               2-225
               

               Cow position:
               chr12:37770845-37770624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 55
               

               Conread position:
               3-173
               

               Cow position:
               chr12:17879334-17879505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               47, 33
               

               Conread position:
               3-224
               

               Cow position:
               chr12:17080227-17080008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               137, 66
               

               Conread position:
               3-303
               

               Cow position:
               chr12:42684978-42685279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               66, 154
               

               Conread position:
               29-212
               

               Cow position:
               chr12:37133737-37133551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               68-223
               

               Cow position:
               chr12:3880349-3880505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               2-139
               

               Cow position:
               chr13:21135922-21135785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               2-142
               

               Cow position:
               chr13:19279073-19279209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               67, 105
               

               Conread position:
               2-166
               

               Cow position:
               chr13:11381744-11381579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               46, 75
               

               Conread position:
               2-168
               

               Cow position:
               chr13:18058271-18058104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               38, 149
               

               Conread position:
               2-168
               

               Cow position:
               chr13:20440602-20440444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               139, 67
               

               Conread position:
               2-172
               

               Cow position:
               chr13:17569123-17568950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-174
               

               Cow position:
               chr13:54389042-54388870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               63, 142
               

               Conread position:
               2-210
               

               Cow position:
               chr13:49503553-49503345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 46
               

               Conread position:
               2-211
               

               Cow position:
               chr13:41806751-41806964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               2-222
               

               Cow position:
               chr13:17439792-17439571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 39
               

               Conread position:
               2-224
               

               Cow position:
               chr13:19883058-19882838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               2-225
               

               Cow position:
               chr13:563164-562940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               67, 26
               

               Conread position:
               2-225
               

               Cow position:
               chr13:1042990-1042758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr13:13089004-13089222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               47, 28
               

               Conread position:
               2-225
               

               Cow position:
               chr13:13265785-13266000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               60, 77
               

               Conread position:
               2-225
               

               Cow position:
               chr13:15885043-15884815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               2-225
               

               Cow position:
               chr13:17800050-17800270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               43, 103
               

               Conread position:
               2-225
               

               Cow position:
               chr13:17821291-17821061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr13:18172315-18172538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 165
               

               Conread position:
               2-225
               

               Cow position:
               chr13:20864037-20863820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               2-225
               

               Cow position:
               chr13:25531813-25531590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               41, 169
               

               Conread position:
               2-225
               

               Cow position:
               chr13:25817505-25817711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               67, 94
               

               Conread position:
               2-225
               

               Cow position:
               chr13:43480036-43480259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               70, 41
               

               Conread position:
               2-225
               

               Cow position:
               chr13:43762147-43762363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               57, 79
               

               Conread position:
               2-225
               

               Cow position:
               chr13:45023233-45023010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 33
               

               Conread position:
               2-225
               

               Cow position:
               chr13:55316212-55315991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               62, 181
               

               Conread position:
               3-172
               

               Cow position:
               chr13:26698520-26698348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               47, 28
               

               Conread position:
               3-183
               

               Cow position:
               chr13:16024569-16024753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               50, 19
               

               Conread position:
               3-212
               

               Cow position:
               chr13:17745223-17745424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               66, 93
               

               Conread position:
               4-203
               

               Cow position:
               chr13:53573949-53574145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               27, 43
               

               Conread position:
               5-225
               

               Cow position:
               chr13:57494208-57493985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               44, 31
               

               Conread position:
               7-225
               

               Cow position:
               chr13:43184891-43184675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               20, 42
               

               Conread position:
               8-225
               

               Cow position:
               chr13:37069330-37069547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               32, 165
               

               Conread position:
               9-205
               

               Cow position:
               chr13:19188287-19188482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               60, 19
               

               Conread position:
               9-225
               

               Cow position:
               chr13:47756355-47756572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               60, 32
               

               Conread position:
               30-221
               

               Cow position:
               chr13:60974089-60974272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               39, 11
               

               Conread position:
               38-225
               

               Cow position:
               chr13:4664853-4664664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               32, 86
               

               Conread position:
               44-225
               

               Cow position:
               chr13:2884069-2884251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               72, 154
               

               Conread position:
               44-225
               

               Cow position:
               chr13:12546892-12546707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               68-224
               

               Cow position:
               chr13:52585978-52585823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               50, 80
               

               Conread position:
               2-177
               

               Cow position:
               chr14:16256802-16256977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               138, 67
               

               Conread position:
               2-187
               

               Cow position:
               chr14:24608000-24608187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               52, 34
               

               Conread position:
               2-195
               

               Cow position:
               chr14:10078304-10078492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               67, 47
               

               Conread position:
               2-210
               

               Cow position:
               chr14:20110686-20110479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               139, 65
               

               Conread position:
               2-224
               

               Cow position:
               chr14:11820084-11819869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               67, 29
               

               Conread position:
               2-224
               

               Cow position:
               chr14:34199807-34199587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               67, 32
               

               Conread position:
               2-225
               

               Cow position:
               chr14:19189080-19189295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               49, 17
               

               Conread position:
               2-225
               

               Cow position:
               chr14:26433206-26432985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               27, 35
               

               Conread position:
               2-225
               

               Cow position:
               chr14:37131689-37131914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr14:39770198-39769974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 27
               

               Conread position:
               3-224
               

               Cow position:
               chr14:27591920-27591700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               44, 122
               

               Conread position:
               3-225
               

               Cow position:
               chr14:18345695-18345474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 34
               

               Conread position:
               3-225
               

               Cow position:
               chr14:42154935-42154705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               24, 35
               

               Conread position:
               9-166
               

               Cow position:
               chr14:49280332-49280173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               12-203
               

               Cow position:
               chr14:26490696-26490510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               56, 16
               

               Conread position:
               12-212
               

               Cow position:
               chr14:9020071-9020270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               43, 16
               

               Conread position:
               12-225
               

               Cow position:
               chr14:3868382-3868174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               111, 41
               

               Conread position:
               14-227
               

               Cow position:
               chr14:37103258-37103468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               49, 69
               

               Conread position:
               24-219
               

               Cow position:
               chr14:23107385-23107579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               40, 22
               

               Conread position:
               63-225
               

               Cow position:
               chr14:22966848-22967008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               62, 90
               

               Conread position:
               72-225
               

               Cow position:
               chr14:24893861-24894016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               78-225
               

               Cow position:
               chr14:21201728-21201575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               2-204
               

               Cow position:
               chr15:38877221-38877022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               164
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               139, 67
               

               Conread position:
               2-210
               

               Cow position:
               chr15:25906990-25907200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               29, 122
               

               Conread position:
               2-219
               

               Cow position:
               chr15:36259521-36259306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               67, 32
               

               Conread position:
               2-224
               

               Cow position:
               chr15:16307505-16307717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               177
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               138, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr15:10335838-10336057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               67, 13
               

               Conread position:
               2-225
               

               Cow position:
               chr15:13515449-13515674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               53, 42
               

               Conread position:
               2-225
               

               Cow position:
               chr15:52611390-52611615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               3-175
               

               Cow position:
               chr15:18671372-18671192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               42, 19
               

               Conread position:
               4-148
               

               Cow position:
               chr15:36353753-36353897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               136, 65
               

               Conread position:
               8-201
               

               Cow position:
               chr15:32324119-32323927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               23, 57
               

               Conread position:
               8-225
               

               Cow position:
               chr15:21893867-21894084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               47, 152
               

               Conread position:
               12-199
               

               Cow position:
               chr15:38837840-38838026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               109, 16
               

               Conread position:
               12-224
               

               Cow position:
               chr15:52778434-52778228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               111, 12
               

               Conread position:
               12-225
               

               Cow position:
               chr15:33284970-33285184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               35, 10
               

               Conread position:
               35-236
               

               Cow position:
               chr15:47821924-47822114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               25, 11
               

               Conread position:
               80-225
               

               Cow position:
               chr15:23798370-23798218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               1-225
               

               Cow position:
               chr16:11105562-11105336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               2-131
               

               Cow position:
               chr16:17903638-17903771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               2-164
               

               Cow position:
               chr16:7505096-7504932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-168
               

               Cow position:
               chr16:17945528-17945362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               61, 118
               

               Conread position:
               2-195
               

               Cow position:
               chr16:51500939-51500753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               138, 29
               

               Conread position:
               2-196
               

               Cow position:
               chr16:17282670-17282483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               67, 38
               

               Conread position:
               2-205
               

               Cow position:
               chr16:51069910-51070121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               45, 5
               

               Conread position:
               2-211
               

               Cow position:
               chr16:35168737-35168526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 86
               

               Conread position:
               2-221
               

               Cow position:
               chr16:13689673-13689455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               174
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               46, 39
               

               Conread position:
               2-223
               

               Cow position:
               chr16:54679676-54679456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               67, 60
               

               Conread position:
               2-225
               

               Cow position:
               chr16:4626384-4626608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 55
               

               Conread position:
               2-225
               

               Cow position:
               chr16:22868171-22868388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               121, 26
               

               Conread position:
               2-225
               

               Cow position:
               chr16:25839627-25839404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               67, 204
               

               Conread position:
               2-225
               

               Cow position:
               chr16:33226531-33226745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               67, 40
               

               Conread position:
               2-225
               

               Cow position:
               chr16:40333317-40333538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               38, 122
               

               Conread position:
               2-225
               

               Cow position:
               chr16:40562239-40562014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr16:47620386-47620167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               67, 45
               

               Conread position:
               2-225
               

               Cow position:
               chr16:47820575-47820358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               61, 74
               

               Conread position:
               2-225
               

               Cow position:
               chr16:48494547-48494769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               67, 118
               

               Conread position:
               2-279
               

               Cow position:
               chr16:4145073-4144797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               68, 168
               

               Conread position:
               3-165
               

               Cow position:
               chr16:33198431-33198591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               61, 73
               

               Conread position:
               3-183
               

               Cow position:
               chr16:31079085-31079272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               92, 62
               

               Conread position:
               3-226
               

               Cow position:
               chr16:16424604-16424818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               4-225
               

               Cow position:
               chr16:56231832-56231610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               172
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               51, 27
               

               Conread position:
               5-224
               

               Cow position:
               chr16:53508980-53509202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               8-167
               

               Cow position:
               chr16:38243660-38243821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               47, 14
               

               Conread position:
               9-203
               

               Cow position:
               chr16:591811-592007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               120, 44
               

               Conread position:
               9-225
               

               Cow position:
               chr16:44973494-44973283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               60, 22
               

               Conread position:
               10-235
               

               Cow position:
               chr16:29380248-29380030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               113, 16
               

               Conread position:
               12-178
               

               Cow position:
               chr16:44744136-44744308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               12-225
               

               Cow position:
               chr16:10148279-10148068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               37, 16
               

               Conread position:
               12-225
               

               Cow position:
               chr16:13969374-13969592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               43, 16
               

               Conread position:
               12-225
               

               Cow position:
               chr16:31978189-31978401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               51, 16
               

               Conread position:
               26-225
               

               Cow position:
               chr16:53613288-53613085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               32-224
               

               Cow position:
               chr16:48191026-48191213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               38, 9
               

               Conread position:
               37-225
               

               Cow position:
               chr16:38905255-38905439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               32, 112
               

               Conread position:
               41-225
               

               Cow position:
               chr16:8840865-8840679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               11, 115
               

               Conread position:
               43-225
               

               Cow position:
               chr16:56845928-56846110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               76, 21
               

               Conread position:
               49-225
               

               Cow position:
               chr16:24228388-24228563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               69, 123
               

               Conread position:
               63-225
               

               Cow position:
               chr16:29399947-29399781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               68-225
               

               Cow position:
               chr16:25484306-25484154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               72, 81
               

               Conread position:
               75-193
               

               Cow position:
               chr16:53891847-53891967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               96
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               2-136
               

               Cow position:
               chr17:21758094-21758224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               106
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               67, 26
               

               Conread position:
               2-152
               

               Cow position:
               chr17:32009393-32009540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               67, 98
               

               Conread position:
               2-218
               

               Cow position:
               chr17:17682857-17683063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               67, 22
               

               Conread position:
               2-221
               

               Cow position:
               chr17:21243740-21243955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               139, 67
               

               Conread position:
               2-221
               

               Cow position:
               chr17:24883524-24883736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               74, 25
               

               Conread position:
               2-224
               

               Cow position:
               chr17:12447354-12447570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               47, 25
               

               Conread position:
               2-224
               

               Cow position:
               chr17:21003779-21004002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               67, 158
               

               Conread position:
               2-225
               

               Cow position:
               chr17:908787-908574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               67, 16
               

               Conread position:
               2-225
               

               Cow position:
               chr17:1410191-1410415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 32
               

               Conread position:
               2-225
               

               Cow position:
               chr17:10458889-10459108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               61, 34
               

               Conread position:
               2-225
               

               Cow position:
               chr17:12591216-12590991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr17:17059471-17059267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr17:20022467-20022689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               67, 183
               

               Conread position:
               2-225
               

               Cow position:
               chr17:24587671-24587446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr17:25612137-25611921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr17:26765065-26764841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               87, 20
               

               Conread position:
               2-225
               

               Cow position:
               chr17:32419069-32419290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               176
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               74, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr17:33288610-33288826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               31, 44
               

               Conread position:
               2-225
               

               Cow position:
               chr17:38647108-38646892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               38, 46
               

               Conread position:
               2-233
               

               Cow position:
               chr17:20990145-20990373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               177
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               41, 169
               

               Conread position:
               2-235
               

               Cow position:
               chr17:32950322-32950089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               52, 17
               

               Conread position:
               2-237
               

               Cow position:
               chr17:23246255-23246026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               33, 67
               

               Conread position:
               3-151
               

               Cow position:
               chr17:21325378-21325231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               138, 43
               

               Conread position:
               8-212
               

               Cow position:
               chr17:7142902-7142705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               121, 20
               

               Conread position:
               9-225
               

               Cow position:
               chr17:42347184-42347393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               38, 18
               

               Conread position:
               12-225
               

               Cow position:
               chr17:26881294-26881509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               36, 16
               

               Conread position:
               13-225
               

               Cow position:
               chr17:24149220-24149005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               54, 15
               

               Conread position:
               34-204
               

               Cow position:
               chr17:3467775-3467618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               107, 10
               

               Conread position:
               34-225
               

               Cow position:
               chr17:29292349-29292539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               36, 139
               

               Conread position:
               36-225
               

               Cow position:
               chr17:33999033-33999216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               28, 69
               

               Conread position:
               37-225
               

               Cow position:
               chr17:20234242-20234055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               26, 9
               

               Conread position:
               41-212
               

               Cow position:
               chr17:1568161-1568336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               46-173
               

               Cow position:
               chr17:6848809-6848681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               92, 17
               

               Conread position:
               46-225
               

               Cow position:
               chr17:30665277-30665100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               23, 108
               

               Conread position:
               49-187
               

               Cow position:
               chr17:31581485-31581346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               113
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               74, 55
               

               Conread position:
               68-225
               

               Cow position:
               chr17:24877125-24876966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               72-225
               

               Cow position:
               chr17:24773658-24773511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               69, 42
               

               Conread position:
               2-167
               

               Cow position:
               chr18:8299992-8299822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               34, 43
               

               Conread position:
               2-174
               

               Cow position:
               chr18:48713524-48713351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               67, 39
               

               Conread position:
               2-218
               

               Cow position:
               chr18:4884544-4884753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               139, 67
               

               Conread position:
               2-223
               

               Cow position:
               chr18:33008036-33007813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-224
               

               Cow position:
               chr18:5578282-5578058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr18:4182214-4182436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               139, 116
               

               Conread position:
               2-225
               

               Cow position:
               chr18:9365892-9365667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               2-225
               

               Cow position:
               chr18:9557952-9557733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               176
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               67, 13
               

               Conread position:
               2-225
               

               Cow position:
               chr18:9974355-9974571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               67, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr18:10904823-10904603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               67, 93
               

               Conread position:
               2-225
               

               Cow position:
               chr18:30248164-30248373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               67, 35
               

               Conread position:
               2-225
               

               Cow position:
               chr18:33299877-33299652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr18:34527125-34527347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               29, 47
               

               Conread position:
               2-225
               

               Cow position:
               chr18:36458907-36458689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               67, 39
               

               Conread position:
               2-225
               

               Cow position:
               chr18:47511979-47511750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               112, 47
               

               Conread position:
               3-222
               

               Cow position:
               chr18:4796945-4796727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               51, 32
               

               Conread position:
               3-225
               

               Cow position:
               chr18:9089672-9089457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               3-225
               

               Cow position:
               chr18:10576077-10575863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               66, 92
               

               Conread position:
               3-225
               

               Cow position:
               chr18:11691436-11691657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 58
               

               Conread position:
               3-237
               

               Cow position:
               chr18:29648756-29648523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               51, 33
               

               Conread position:
               8-225
               

               Cow position:
               chr18:21205331-21205121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               61, 38
               

               Conread position:
               34-170
               

               Cow position:
               chr18:9010663-9010528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               107, 7
               

               Conread position:
               41-225
               

               Cow position:
               chr18:29796488-29796670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               28, 131
               

               Conread position:
               50-225
               

               Cow position:
               chr18:11233361-11233186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               20, 140
               

               Conread position:
               57-212
               

               Cow position:
               chr18:39115219-39115376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               68-212
               

               Cow position:
               chr18:24957210-24957064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               60, 76
               

               Conread position:
               68-227
               

               Cow position:
               chr18:50700580-50700419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               2-167
               

               Cow position:
               chr19:15719623-15719787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               53, 13
               

               Conread position:
               2-195
               

               Cow position:
               chr19:24759887-24760078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               65, 163
               

               Conread position:
               2-204
               

               Cow position:
               chr19:25655232-25655441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               2-210
               

               Cow position:
               chr19:18786326-18786533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               67, 103
               

               Conread position:
               2-212
               

               Cow position:
               chr19:48960393-48960179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               165
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-221
               

               Cow position:
               chr19:6079363-6079579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               53, 25
               

               Conread position:
               2-224
               

               Cow position:
               chr19:4448538-4448310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               38, 185
               

               Conread position:
               2-225
               

               Cow position:
               chr19:3621425-3621205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               67, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr19:8033743-8033516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               43, 34
               

               Conread position:
               2-225
               

               Cow position:
               chr19:10213667-10213447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               61, 155
               

               Conread position:
               2-225
               

               Cow position:
               chr19:21199134-21198903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               182
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               49, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr19:21378474-21378689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               139, 67
               

               Conread position:
               2-225
               

               Cow position:
               chr19:30232715-30232505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               139, 43
               

               Conread position:
               2-225
               

               Cow position:
               chr19:35762256-35762480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 34
               

               Conread position:
               2-225
               

               Cow position:
               chr19:39576573-39576794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               40, 48
               

               Conread position:
               2-225
               

               Cow position:
               chr19:41946178-41945965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               67, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr19:43702714-43702926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               67, 86
               

               Conread position:
               4-225
               

               Cow position:
               chr19:36176742-36176521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               66, 37
               

               Conread position:
               6-222
               

               Cow position:
               chr19:11376411-11376626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               63, 164
               

               Conread position:
               11-224
               

               Cow position:
               chr19:22799091-22799306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 11
               

               Conread position:
               12-188
               

               Cow position:
               chr19:43834-43658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               51, 32
               

               Conread position:
               12-222
               

               Cow position:
               chr19:7158735-7158954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               57, 10
               

               Conread position:
               27-225
               

               Cow position:
               chr19:6880899-6881103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               36-225
               

               Cow position:
               chr19:1901034-1901225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               36-225
               

               Cow position:
               chr19:47671715-47671527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               13, 127
               

               Conread position:
               41-225
               

               Cow position:
               chr19:11565194-11565375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               28, 91
               

               Conread position:
               53-225
               

               Cow position:
               chr19:23222582-23222411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               14, 104
               

               Conread position:
               53-263
               

               Cow position:
               chr19:43035189-43034980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               16, 122
               

               Conread position:
               2-128
               

               Cow position:
               chr2:44222831-44222704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-168
               

               Cow position:
               chr2:45912625-45912793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               43, 34
               

               Conread position:
               2-179
               

               Cow position:
               chr2:78249746-78249567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               2-183
               

               Cow position:
               chr2:30144725-30144552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               34, 43
               

               Conread position:
               2-202
               

               Cow position:
               chr2:1762802-1762600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               2-218
               

               Cow position:
               chr2:44191487-44191273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               67, 93
               

               Conread position:
               2-223
               

               Cow position:
               chr2:53532805-53533017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               2-225
               

               Cow position:
               chr2:4254528-4254748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr2:9063281-9063058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               39, 26
               

               Conread position:
               2-225
               

               Cow position:
               chr2:13684706-13684493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               62, 94
               

               Conread position:
               2-225
               

               Cow position:
               chr2:19287075-19287289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               139, 61
               

               Conread position:
               2-225
               

               Cow position:
               chr2:33554163-33554371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               67, 95
               

               Conread position:
               2-225
               

               Cow position:
               chr2:34695252-34695029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               31, 180
               

               Conread position:
               2-225
               

               Cow position:
               chr2:38628916-38628695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               67, 174
               

               Conread position:
               2-225
               

               Cow position:
               chr2:42255442-42255221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               61, 26
               

               Conread position:
               2-225
               

               Cow position:
               chr2:44065584-44065379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               117, 32
               

               Conread position:
               2-225
               

               Cow position:
               chr2:44170566-44170344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               2-225
               

               Cow position:
               chr2:45784744-45784519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               67, 82
               

               Conread position:
               2-225
               

               Cow position:
               chr2:46189089-46189304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               43, 48
               

               Conread position:
               2-225
               

               Cow position:
               chr2:51594772-51594553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               39, 25
               

               Conread position:
               2-225
               

               Cow position:
               chr2:53650031-53649812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               139, 67
               

               Conread position:
               2-225
               

               Cow position:
               chr2:53851444-53851220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr2:64212549-64212774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr2:74260465-74260246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               50, 29
               

               Conread position:
               2-225
               

               Cow position:
               chr2:77467441-77467669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               139, 61
               

               Conread position:
               2-226
               

               Cow position:
               chr2:79951-80173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               2-226
               

               Cow position:
               chr2:68716661-68716883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               3-194
               

               Cow position:
               chr2:19328553-19328365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               66, 155
               

               Conread position:
               3-224
               

               Cow position:
               chr2:77157339-77157565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               31, 48
               

               Conread position:
               4-146
               

               Cow position:
               chr2:47147913-47147772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               4-179
               

               Cow position:
               chr2:8354940-8355112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               136, 32
               

               Conread position:
               4-214
               

               Cow position:
               chr2:1638609-1638397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               5-225
               

               Cow position:
               chr2:13604473-13604253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               41, 23
               

               Conread position:
               5-225
               

               Cow position:
               chr2:36077357-36077132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               64, 17
               

               Conread position:
               8-171
               

               Cow position:
               chr2:28257467-28257299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               44, 11
               

               Conread position:
               8-225
               

               Cow position:
               chr2:21355848-21356066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               8-225
               

               Cow position:
               chr2:46344692-46344476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               47, 38
               

               Conread position:
               9-212
               

               Cow position:
               chr2:84983242-84983034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               12-225
               

               Cow position:
               chr2:21644452-21644665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               52, 10
               

               Conread position:
               12-225
               

               Cow position:
               chr2:47361523-47361734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               127, 19
               

               Conread position:
               12-225
               

               Cow position:
               chr2:68970736-68970521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               110, 29
               

               Conread position:
               24-214
               

               Cow position:
               chr2:9324980-9324792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               117, 17
               

               Conread position:
               26-189
               

               Cow position:
               chr2:42309571-42309734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               43, 15
               

               Conread position:
               35-224
               

               Cow position:
               chr2:82647841-82648031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               12, 147
               

               Conread position:
               53-225
               

               Cow position:
               chr2:42599890-42599716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               53-225
               

               Cow position:
               chr2:51638514-51638335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               17, 131
               

               Conread position:
               63-225
               

               Cow position:
               chr2:37072765-37072601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               68-225
               

               Cow position:
               chr2:14884226-14884072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               76, 104
               

               Conread position:
               69-225
               

               Cow position:
               chr2:1203626-1203469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               2-181
               

               Cow position:
               chr20:25162077-25162258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-183
               

               Cow position:
               chr20:19363313-19363496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               36, 75
               

               Conread position:
               2-218
               

               Cow position:
               chr20:31740170-31740381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               44, 35
               

               Conread position:
               2-222
               

               Cow position:
               chr20:38818056-38817843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               67, 34
               

               Conread position:
               2-224
               

               Cow position:
               chr20:8578298-8578075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 25
               

               Conread position:
               2-225
               

               Cow position:
               chr20:3606911-3607124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               139, 67
               

               Conread position:
               2-225
               

               Cow position:
               chr20:6240471-6240699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               50, 20
               

               Conread position:
               2-225
               

               Cow position:
               chr20:8606879-8607090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               2-225
               

               Cow position:
               chr20:12420569-12420791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               67, 47
               

               Conread position:
               2-225
               

               Cow position:
               chr20:12581905-12582117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               45, 25
               

               Conread position:
               2-225
               

               Cow position:
               chr20:38768411-38768623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               67, 38
               

               Conread position:
               2-225
               

               Cow position:
               chr20:39019745-39019525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               67, 131
               

               Conread position:
               2-229
               

               Cow position:
               chr20:24069855-24069635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               46, 26
               

               Conread position:
               3-204
               

               Cow position:
               chr20:23792652-23792458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               66, 20
               

               Conread position:
               12-170
               

               Cow position:
               chr20:32463481-32463640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               47, 25
               

               Conread position:
               12-205
               

               Cow position:
               chr20:41309579-41309386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               56, 129
               

               Conread position:
               13-225
               

               Cow position:
               chr20:28296331-28296120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               56, 11
               

               Conread position:
               27-205
               

               Cow position:
               chr20:20471811-20471637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               19, 76
               

               Conread position:
               35-225
               

               Cow position:
               chr20:19328418-19328229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               34, 9
               

               Conread position:
               46-167
               

               Cow position:
               chr20:33820229-33820107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               94
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               49-225
               

               Cow position:
               chr20:5104436-5104605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               20, 104
               

               Conread position:
               63-225
               

               Cow position:
               chr20:33177179-33177012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               66, 93
               

               Conread position:
               78-225
               

               Cow position:
               chr20:41119886-41119745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               85-236
               

               Cow position:
               chr20:4781533-4781380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               1-225
               

               Cow position:
               chr21:911895-912116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               61, 44
               

               Conread position:
               2-180
               

               Cow position:
               chr21:18041777-18041956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               46, 27
               

               Conread position:
               2-205
               

               Cow position:
               chr21:42384578-42384376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               67, 26
               

               Conread position:
               2-205
               

               Cow position:
               chr21:45355903-45355707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               138, 28
               

               Conread position:
               2-212
               

               Cow position:
               chr21:23192442-23192654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               165
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               43, 27
               

               Conread position:
               2-212
               

               Cow position:
               chr21:34654144-34653945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               138, 34
               

               Conread position:
               2-218
               

               Cow position:
               chr21:28626312-28626096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               67, 156
               

               Conread position:
               2-223
               

               Cow position:
               chr21:30222415-30222196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               174
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               55, 39
               

               Conread position:
               2-224
               

               Cow position:
               chr21:5392466-5392691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               67, 133
               

               Conread position:
               2-225
               

               Cow position:
               chr21:641657-641435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               67, 40
               

               Conread position:
               2-225
               

               Cow position:
               chr21:724814-725041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               173
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-225
               

               Cow position:
               chr21:29069257-29069478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               177
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               2-225
               

               Cow position:
               chr21:33263914-33263701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               44, 71
               

               Conread position:
               2-225
               

               Cow position:
               chr21:38121171-38120958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               67, 80
               

               Conread position:
               2-237
               

               Cow position:
               chr21:16187737-16187967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               67, 73
               

               Conread position:
               3-225
               

               Cow position:
               chr21:24858384-24858162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               42, 29
               

               Conread position:
               4-225
               

               Cow position:
               chr21:18842169-18842387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               42, 46
               

               Conread position:
               7-170
               

               Cow position:
               chr21:47066832-47066995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               133, 46
               

               Conread position:
               11-225
               

               Cow position:
               chr21:18495031-18494816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               59, 35
               

               Conread position:
               12-198
               

               Cow position:
               chr21:18155506-18155696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               51, 10
               

               Conread position:
               13-171
               

               Cow position:
               chr21:6834108-6833949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               27-225
               

               Cow position:
               chr21:13840373-13840173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               27, 136
               

               Conread position:
               27-225
               

               Cow position:
               chr21:15445027-15445228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               42, 19
               

               Conread position:
               28-225
               

               Cow position:
               chr21:31662512-31662311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               29-214
               

               Cow position:
               chr21:17875146-17875334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               26, 14
               

               Conread position:
               34-222
               

               Cow position:
               chr21:10727317-10727134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               42, 119
               

               Conread position:
               35-224
               

               Cow position:
               chr21:23822207-23822019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               22, 145
               

               Conread position:
               44-225
               

               Cow position:
               chr21:28512557-28512383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               25, 5
               

               Conread position:
               68-201
               

               Cow position:
               chr21:363655-363521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               76, 54
               

               Conread position:
               74-218
               

               Cow position:
               chr21:5566999-5566848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               2-168
               

               Cow position:
               chr22:19173699-19173536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               138, 67
               

               Conread position:
               2-190
               

               Cow position:
               chr22:9283595-9283782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               67, 25
               

               Conread position:
               2-192
               

               Cow position:
               chr22:1563247-1563437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               2-203
               

               Cow position:
               chr22:6327766-6327970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               154, 67
               

               Conread position:
               2-205
               

               Cow position:
               chr22:2523965-2523766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               67, 43
               

               Conread position:
               2-205
               

               Cow position:
               chr22:12315814-12315615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 26
               

               Conread position:
               2-211
               

               Cow position:
               chr22:5616305-5616097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               67, 29
               

               Conread position:
               2-212
               

               Cow position:
               chr22:5675177-5675375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               138, 28
               

               Conread position:
               2-212
               

               Cow position:
               chr22:21502748-21502536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               167
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               50, 74
               

               Conread position:
               2-212
               

               Cow position:
               chr22:30998889-30998694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 29
               

               Conread position:
               2-218
               

               Cow position:
               chr22:41898444-41898658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               67, 52
               

               Conread position:
               2-222
               

               Cow position:
               chr22:10631389-10631159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               175
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-223
               

               Cow position:
               chr22:4563365-4563148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               63, 42
               

               Conread position:
               2-224
               

               Cow position:
               chr22:21295721-21295940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               67, 96
               

               Conread position:
               2-224
               

               Cow position:
               chr22:22160729-22160505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               2-224
               

               Cow position:
               chr22:29290136-29290352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               32, 20
               

               Conread position:
               2-225
               

               Cow position:
               chr22:845906-845686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               2-225
               

               Cow position:
               chr22:15090745-15090524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               50, 27
               

               Conread position:
               2-225
               

               Cow position:
               chr22:17764385-17764161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               2-225
               

               Cow position:
               chr22:17993028-17993246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               37, 26
               

               Conread position:
               2-225
               

               Cow position:
               chr22:26339757-26339544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               139, 26
               

               Conread position:
               2-225
               

               Cow position:
               chr22:36569548-36569758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               67, 42
               

               Conread position:
               2-225
               

               Cow position:
               chr22:38439154-38439374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               44, 48
               

               Conread position:
               2-237
               

               Cow position:
               chr22:18838255-18838022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               67, 128
               

               Conread position:
               3-140
               

               Cow position:
               chr22:19827861-19827999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               102
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               3-223
               

               Cow position:
               chr22:22613108-22612898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               3-224
               

               Cow position:
               chr22:864513-864733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               66, 177
               

               Conread position:
               3-225
               

               Cow position:
               chr22:10685086-10685304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               138, 65
               

               Conread position:
               4-225
               

               Cow position:
               chr22:3317122-3316912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               70, 45
               

               Conread position:
               4-261
               

               Cow position:
               chr22:12803384-12803638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               65, 117
               

               Conread position:
               7-165
               

               Cow position:
               chr22:226456-226613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               134, 62
               

               Conread position:
               8-180
               

               Cow position:
               chr22:32698761-32698585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               121, 38
               

               Conread position:
               8-225
               

               Cow position:
               chr22:34712723-34712498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               44, 20
               

               Conread position:
               9-170
               

               Cow position:
               chr22:33448084-33448249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               67, 37
               

               Conread position:
               9-224
               

               Cow position:
               chr22:27550353-27550140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               42, 27
               

               Conread position:
               9-225
               

               Cow position:
               chr22:30515251-30515036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               35, 19
               

               Conread position:
               12-203
               

               Cow position:
               chr22:12313418-12313225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               56, 32
               

               Conread position:
               12-225
               

               Cow position:
               chr22:40374602-40374390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               51, 33
               

               Conread position:
               13-224
               

               Cow position:
               chr22:40048548-40048348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               24, 99
               

               Conread position:
               26-224
               

               Cow position:
               chr22:4651162-4650966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               7, 19
               

               Conread position:
               30-176
               

               Cow position:
               chr22:26969759-26969611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               93, 16
               

               Conread position:
               42-225
               

               Cow position:
               chr22:30954998-30954823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               99, 20
               

               Conread position:
               55-225
               

               Cow position:
               chr22:28356990-28356819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               86, 0
               
56-225UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr22:15623275-15623102 (view  custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               49, 0
               
57-224UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr22:21526643-21526807 (view  custom track)

               
               
               
Alignm length: 169

               
               
               
Alignm identity: 126

               
               
               
Alignm E-value: 1e-26

               
               
               
Alignm gaps (pig, cow): 84, 112
57-231UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr22:1081453-1081281 (view  custom track)

               
               
               
Alignm length: 177

               
               
               
Alignm identity: 130

               
               
               
Alignm E-value: 4e-25

               
               
               
Alignm gaps (pig, cow): 84, 7

               
               
               Conread position:63-225
               
               
               Cow position:chr22:19376651-19376494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:69-211
               
               
               Cow position:chr22:2945734-2945874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:2-153
               
               
               Cow position:chr23:12363609-12363761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:2-178
               
               
               Cow position:chr23:17404848-17404673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:2-211
               
               
               Cow position:chr23:21764929-21764720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:2-225
               
               
               Cow position:chr23:1720973-1721195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:2-225
               
               
               Cow position:chr23:1883403-1883182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:2-225
               
               
               Cow position:chr23:7845302-7845078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:2-225
               
               
               Cow position:chr23:14191563-14191338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:2-225
               
               
               Cow position:chr23:16881154-16881368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:2-225
               
               
               Cow position:chr23:21452721-21452944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:3-137
               
               
               Cow position:chr23:5795487-5795352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 46

               
               
               Conread position:3-183
               
               
               Cow position:chr23:3282114-3282289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 73

               
               
               Conread position:4-225
               
               
               Cow position:chr23:29034325-29034102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:9-225
               
               
               Cow position:chr23:187180-186960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:12-214
               
               
               Cow position:chr23:16847968-16847762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:12-235
               
               
               Cow position:chr23:40781329-40781104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:34-225
               
               
               Cow position:chr23:37992962-37992778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:41-170
               
               
               Cow position:chr23:1490021-1489891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:68-225
               
               
               Cow position:chr23:3140807-3140653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:82-225
               
               
               Cow position:chr23:1610784-1610641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:2-110
               
               
               Cow position:chr24:39791523-39791414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-154
               
               
               Cow position:chr24:23186937-23187087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:2-160
               
               
               Cow position:chr24:37037882-37037723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 116

               
               
               Conread position:2-168
               
               
               Cow position:chr24:29028023-29027860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):138, 29

               
               
               Conread position:2-175
               
               
               Cow position:chr24:29180872-29180698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):67, 168

               
               
               Conread position:2-181
               
               
               Cow position:chr24:30897554-30897735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-205
               
               
               Cow position:chr24:39833533-39833733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:2-212
               
               
               Cow position:chr24:31036332-31036133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:2-223
               
               
               Cow position:chr24:3430716-3430500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:2-223
               
               
               Cow position:chr24:28062931-28062710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:2-224
               
               
               Cow position:chr24:211969-211745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-224
               
               
               Cow position:chr24:31812171-31811948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):67, 74

               
               
               Conread position:2-225
               
               
               Cow position:chr24:6487901-6487683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:2-225
               
               
               Cow position:chr24:11887142-11886920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):139, 66

               
               
               Conread position:2-225
               
               
               Cow position:chr24:17860276-17860488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:2-225
               
               
               Cow position:chr24:28496600-28496826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:2-225
               
               
               Cow position:chr24:35675521-35675306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr24:39483460-39483236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:8-225
               
               
               Cow position:chr24:43364337-43364126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:33-171
               
               
               Cow position:chr24:17938714-17938576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:34-226
               
               
               Cow position:chr24:40184578-40184385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:35-225
               
               
               Cow position:chr24:5435094-5435284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:37-187
               
               
               Cow position:chr24:22647389-22647545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:40-225
               
               
               Cow position:chr24:21264561-21264748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 133

               
               
               Conread position:46-210
               
               
               Cow position:chr24:6102765-6102600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:49-225
               
               
               Cow position:chr24:27941072-27941245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:57-225
               
               
               Cow position:chr24:38375214-38375047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:59-212
               
               
               Cow position:chr24:29493959-29494115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:2-153
               
               
               Cow position:chr25:12609347-12609198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 74

               
               
               Conread position:2-164
               
               
               Cow position:chr25:35333163-35333000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:2-184
               
               
               Cow position:chr25:32277590-32277778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:2-205
               
               
               Cow position:chr25:8157499-8157705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 144

               
               
               Conread position:2-223
               
               
               Cow position:chr25:33550513-33550292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:2-225
               
               
               Cow position:chr25:6961149-6961365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:2-225
               
               
               Cow position:chr25:8120787-8120561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr25:9642362-9642139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:2-225
               
               
               Cow position:chr25:11436803-11437017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):67, 99

               
               
               Conread position:2-225
               
               
               Cow position:chr25:15714877-15714666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 51

               
               
               Conread position:2-225
               
               
               Cow position:chr25:20211076-20211301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:2-225
               
               
               Cow position:chr25:22531287-22531072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:2-225
               
               
               Cow position:chr25:30279204-30279422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:2-225
               
               
               Cow position:chr25:36036775-36036995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):139, 167

               
               
               Conread position:3-193
               
               
               Cow position:chr25:17190740-17190927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:3-212
               
               
               Cow position:chr25:22178920-22178719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):138, 28

               
               
               Conread position:3-225
               
               
               Cow position:chr25:2136362-2136136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 182

               
               
               Conread position:3-225
               
               
               Cow position:chr25:7801144-7800921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:3-225
               
               
               Cow position:chr25:12319340-12319553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 143

               
               
               Conread position:7-204
               
               
               Cow position:chr25:7750451-7750256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:7-218
               
               
               Cow position:chr25:6885972-6886185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:8-225
               
               
               Cow position:chr25:12899757-12899540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:12-222
               
               
               Cow position:chr25:21951119-21950914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):111, 70

               
               
               Conread position:12-224
               
               
               Cow position:chr25:12239153-12239362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:14-213
               
               
               Cow position:chr25:5571801-5572001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 131

               
               
               Conread position:17-211
               
               
               Cow position:chr25:8347500-8347308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 108

               
               
               Conread position:37-223
               
               
               Cow position:chr25:9961200-9961391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:44-225
               
               
               Cow position:chr25:18075638-18075453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:66-203
               
               
               Cow position:chr25:17186337-17186198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:68-225
               
               
               Cow position:chr25:26238810-26238656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:1-168
               
               
               Cow position:chr26:12964670-12964839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:2-221
               
               
               Cow position:chr26:17148729-17148508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:2-224
               
               
               Cow position:chr26:16783847-16783627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):139, 67

               
               
               Conread position:2-225
               
               
               Cow position:chr26:5307166-5306936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:2-225
               
               
               Cow position:chr26:24280847-24280633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):139, 75

               
               
               Conread position:3-183
               
               
               Cow position:chr26:22892423-22892602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 73

               
               
               Conread position:3-183
               
               
               Cow position:chr26:23582923-23583104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:3-225
               
               
               Cow position:chr26:5246456-5246684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:3-225
               
               
               Cow position:chr26:23925963-23926174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:10-225
               
               
               Cow position:chr26:33096543-33096762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:36-224
               
               
               Cow position:chr26:32013618-32013436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:36-225
               
               
               Cow position:chr26:3071973-3072159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 81

               
               
               Conread position:39-216
               
               
               Cow position:chr26:32553666-32553494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:1-225
               
               
               Cow position:chr27:27449486-27449265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):68, 123

               
               
               Conread position:2-166
               
               
               Cow position:chr27:16625847-16626010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:2-217
               
               
               Cow position:chr27:7212763-7212551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:2-223
               
               
               Cow position:chr27:20641385-20641179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:2-225
               
               
               Cow position:chr27:15454158-15454381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:2-225
               
               
               Cow position:chr27:15668821-15668597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr27:19685763-19685545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):67, 156

               
               
               Conread position:2-225
               
               
               Cow position:chr27:20068027-20067809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:2-225
               
               
               Cow position:chr27:22035427-22035204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:2-225
               
               
               Cow position:chr27:22220504-22220723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):67, 121

               
               
               Conread position:2-225
               
               
               Cow position:chr27:26150970-26151189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:2-225
               
               
               Cow position:chr27:28206749-28206967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):138, 93

               
               
               Conread position:2-226
               
               
               Cow position:chr27:19387968-19388189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:3-214
               
               
               Cow position:chr27:23890889-23891096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:4-224
               
               
               Cow position:chr27:16871964-16871747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:9-225
               
               
               Cow position:chr27:2683188-2682974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:10-225
               
               
               Cow position:chr27:15859131-15858921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:14-178
               
               
               Cow position:chr27:26141732-26141898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:28-237
               
               
               Cow position:chr27:19647969-19647757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:53-218
               
               
               Cow position:chr27:8629874-8629709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:74-225
               
               
               Cow position:chr27:21419048-21418897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 108

               
               
               Conread position:1-225
               
               
               Cow position:chr28:3914728-3914502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:2-136
               
               
               Cow position:chr28:11079319-11079185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:2-159
               
               
               Cow position:chr28:10863773-10863927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:2-195
               
               
               Cow position:chr28:2960820-2961009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 83

               
               
               Conread position:2-212
               
               
               Cow position:chr28:28164100-28163897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 137

               
               
               Conread position:2-217
               
               
               Cow position:chr28:5128718-5128929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 67

               
               
               Conread position:2-225
               
               
               Cow position:chr28:4588111-4587889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:2-225
               
               
               Cow position:chr28:7549047-7549270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:2-225
               
               
               Cow position:chr28:8022091-8022318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:2-225
               
               
               Cow position:chr28:11585191-11585415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):67, 171

               
               
               Conread position:2-225
               
               
               Cow position:chr28:12430617-12430402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):139, 42

               
               
               Conread position:2-225
               
               
               Cow position:chr28:14649361-14649141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:2-225
               
               
               Cow position:chr28:21868468-21868244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):67, 51

               
               
               Conread position:2-225
               
               
               Cow position:chr28:22346032-22345812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 77

               
               
               Conread position:2-235
               
               
               Cow position:chr28:5817851-5817629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:2-237
               
               
               Cow position:chr28:8787551-8787325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:2-265
               
               
               Cow position:chr28:5204206-5203953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 39

               
               
               Conread position:3-224
               
               
               Cow position:chr28:16204324-16204539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:3-225
               
               
               Cow position:chr28:9636447-9636664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:4-224
               
               
               Cow position:chr28:3023904-3024118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:4-224
               
               
               Cow position:chr28:34082002-34082228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:4-225
               
               
               Cow position:chr28:7751291-7751508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:5-224
               
               
               Cow position:chr28:25056974-25056766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:7-223
               
               
               Cow position:chr28:26220264-26220056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):62, 146

               
               
               Conread position:7-224
               
               
               Cow position:chr28:10533926-10534137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:8-203
               
               
               Cow position:chr28:30937662-30937852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):133, 55

               
               
               Conread position:12-173
               
               
               Cow position:chr28:27428748-27428586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:12-225
               
               
               Cow position:chr28:34133863-34133656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:27-224
               
               
               Cow position:chr28:12758513-12758715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:53-219
               
               
               Cow position:chr28:25459491-25459324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:1-162
               
               
               Cow position:chr29:29314647-29314810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:2-140
               
               
               Cow position:chr29:34358974-34359112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 80

               
               
               Conread position:2-153
               
               
               Cow position:chr29:31594123-31594276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-188
               
               
               Cow position:chr29:40615517-40615704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:2-203
               
               
               Cow position:chr29:26275614-26275421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):139, 70

               
               
               Conread position:2-214
               
               
               Cow position:chr29:23243874-23244086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:2-225
               
               
               Cow position:chr29:12680160-12679940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:2-225
               
               
               Cow position:chr29:19762275-19762058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:2-225
               
               
               Cow position:chr29:24103535-24103763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr29:26735033-26734819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):139, 47

               
               
               Conread position:2-226
               
               
               Cow position:chr29:13639363-13639582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:3-172
               
               
               Cow position:chr29:31674636-31674465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:3-225
               
               
               Cow position:chr29:40166247-40166028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:4-223
               
               
               Cow position:chr29:43311790-43312008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:7-225
               
               
               Cow position:chr29:28446249-28446474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-224
               
               
               Cow position:chr29:22778181-22778395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:18-225
               
               
               Cow position:chr29:3396096-3395896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:25-225
               
               
               Cow position:chr29:16609725-16609524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:29-237
               
               
               Cow position:chr29:18072916-18072701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:34-224
               
               
               Cow position:chr29:2644327-2644521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 167

               
               
               Conread position:37-225
               
               
               Cow position:chr29:12783984-12784169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 127

               
               
               Conread position:46-225
               
               
               Cow position:chr29:3711353-3711172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:59-225
               
               
               Cow position:chr29:40651121-40651290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:68-225
               
               
               Cow position:chr29:1933614-1933771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:72-195
               
               
               Cow position:chr29:24345514-24345638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1-225
               
               
               Cow position:chr3:23169080-23169306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:2-164
               
               
               Cow position:chr3:54782027-54782196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:2-180
               
               
               Cow position:chr3:74079654-74079834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:2-211
               
               
               Cow position:chr3:68881134-68881338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:2-225
               
               
               Cow position:chr3:2396797-2397019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 28

               
               
               Conread position:2-225
               
               
               Cow position:chr3:7337800-7338010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):139, 47

               
               
               Conread position:2-225
               
               
               Cow position:chr3:10347336-10347119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:2-225
               
               
               Cow position:chr3:10958258-10958465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):67, 137

               
               
               Conread position:2-225
               
               
               Cow position:chr3:17936857-17937075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:2-225
               
               
               Cow position:chr3:29813227-29813007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:2-225
               
               
               Cow position:chr3:39969881-39970108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr3:50768661-50768442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:2-225
               
               
               Cow position:chr3:52608164-52607947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):139, 67

               
               
               Conread position:2-225
               
               
               Cow position:chr3:53150307-53150091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:2-225
               
               
               Cow position:chr3:53790554-53790777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:2-225
               
               
               Cow position:chr3:54946113-54945888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 43

               
               
               Conread position:2-225
               
               
               Cow position:chr3:55189772-55189987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):67, 111

               
               
               Conread position:2-225
               
               
               Cow position:chr3:56476664-56476446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:2-225
               
               
               Cow position:chr3:58968921-58969132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):132, 41

               
               
               Conread position:2-225
               
               
               Cow position:chr3:59610736-59610960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 153

               
               
               Conread position:2-225
               
               
               Cow position:chr3:74409467-74409255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 150

               
               
               Conread position:2-225
               
               
               Cow position:chr3:74601096-74600881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 140

               
               
               Conread position:2-225
               
               
               Cow position:chr3:77496811-77496581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:2-227
               
               
               Cow position:chr3:11711947-11711715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 26

               
               
               Conread position:2-227
               
               
               Cow position:chr3:49327926-49327699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:3-170
               
               
               Cow position:chr3:22232669-22232837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:3-215
               
               
               Cow position:chr3:48363057-48362855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):137, 28

               
               
               Conread position:3-225
               
               
               Cow position:chr3:53221993-53221778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):137, 28

               
               
               Conread position:3-225
               
               
               Cow position:chr3:83474725-83474511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:4-168
               
               
               Cow position:chr3:61190944-61191107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:4-183
               
               
               Cow position:chr3:22820552-22820370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:5-225
               
               
               Cow position:chr3:12705564-12705795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:7-225
               
               
               Cow position:chr3:75479980-75479776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:8-166
               
               
               Cow position:chr3:34669751-34669909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:8-225
               
               
               Cow position:chr3:49731663-49731874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:12-177
               
               
               Cow position:chr3:4082119-4082288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:12-225
               
               
               Cow position:chr3:74621017-74621233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:12-235
               
               
               Cow position:chr3:57754504-57754731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:15-210
               
               
               Cow position:chr3:11063349-11063157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:25-221
               
               
               Cow position:chr3:65969122-65968922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:27-225
               
               
               Cow position:chr3:54862453-54862658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 160

               
               
               Conread position:36-166
               
               
               Cow position:chr3:2630746-2630613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:36-211
               
               
               Cow position:chr3:56697896-56697717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:41-225
               
               
               Cow position:chr3:80581610-80581435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 112

               
               
               Conread position:46-212
               
               
               Cow position:chr3:26960649-26960818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:55-205
               
               
               Cow position:chr3:25945016-25944861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-225
               
               
               Cow position:chr4:19463496-19463270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:2-133
               
               
               Cow position:chr4:52832017-52832149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:2-139
               
               
               Cow position:chr4:25537546-25537408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-150
               
               
               Cow position:chr4:48409269-48409415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:2-151
               
               
               Cow position:chr4:47047894-47047743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:2-179
               
               
               Cow position:chr4:12049246-12049067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:2-180
               
               
               Cow position:chr4:3421621-3421448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 67

               
               
               Conread position:2-189
               
               
               Cow position:chr4:32259846-32260039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:2-195
               
               
               Cow position:chr4:51728076-51727882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:2-201
               
               
               Cow position:chr4:10379109-10378914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 163

               
               
               Conread position:2-203
               
               
               Cow position:chr4:21391812-21392011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 177

               
               
               Conread position:2-225
               
               
               Cow position:chr4:14470570-14470791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):38, 46

               
               
               Conread position:2-225
               
               
               Cow position:chr4:16799187-16799413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:2-225
               
               
               Cow position:chr4:19097287-19097071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:2-225
               
               
               Cow position:chr4:20139516-20139740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:2-225
               
               
               Cow position:chr4:24458104-24458318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:2-225
               
               
               Cow position:chr4:27687926-27687703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):45, 179

               
               
               Conread position:2-225
               
               
               Cow position:chr4:38952552-38952338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:3-225
               
               
               Cow position:chr4:33357934-33357711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:3-225
               
               
               Cow position:chr4:48961487-48961710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):66, 74

               
               
               Conread position:7-221
               
               
               Cow position:chr4:51899003-51898787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:7-223
               
               
               Cow position:chr4:66172802-66173016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:8-225
               
               
               Cow position:chr4:36290617-36290387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):61, 22

               
               
               Conread position:8-225
               
               
               Cow position:chr4:45367732-45367513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:8-225
               
               
               Cow position:chr4:48137905-48137689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:9-224
               
               
               Cow position:chr4:59785314-59785098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 173

               
               
               Conread position:12-212
               
               
               Cow position:chr4:23526683-23526490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:12-225
               
               
               Cow position:chr4:63964999-63965211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:26-217
               
               
               Cow position:chr4:45898-45705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 106

               
               
               Conread position:27-224
               
               
               Cow position:chr4:27664989-27664786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:38-224
               
               
               Cow position:chr4:26400928-26400737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:41-225
               
               
               Cow position:chr4:19700068-19699880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:53-225
               
               
               Cow position:chr4:41301040-41301211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:68-225
               
               
               Cow position:chr4:43749874-43750032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:2-168
               
               
               Cow position:chr5:3549749-3549918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:2-168
               
               
               Cow position:chr5:18289163-18288995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:2-180
               
               
               Cow position:chr5:31144755-31144933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):139, 121

               
               
               Conread position:2-194
               
               
               Cow position:chr5:42050584-42050391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:2-196
               
               
               Cow position:chr5:50821815-50821620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:2-204
               
               
               Cow position:chr5:30629127-30629324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:2-205
               
               
               Cow position:chr5:56014763-56014567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):139, 74

               
               
               Conread position:2-212
               
               
               Cow position:chr5:45472314-45472091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 171

               
               
               Conread position:2-221
               
               
               Cow position:chr5:24996190-24996409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:2-222
               
               
               Cow position:chr5:6670161-6670382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):67, 89

               
               
               Conread position:2-224
               
               
               Cow position:chr5:57074299-57074521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:2-225
               
               
               Cow position:chr5:7044673-7044898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr5:20783652-20783437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):139, 67

               
               
               Conread position:2-225
               
               
               Cow position:chr5:21617490-21617268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:2-225
               
               
               Cow position:chr5:30302927-30302708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:2-225
               
               
               Cow position:chr5:34916163-34915954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:2-225
               
               
               Cow position:chr5:35826634-35826403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):139, 59

               
               
               Conread position:2-225
               
               
               Cow position:chr5:41545861-41546081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:2-225
               
               
               Cow position:chr5:42744818-42744606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:2-225
               
               
               Cow position:chr5:43474877-43474660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):139, 26

               
               
               Conread position:2-225
               
               
               Cow position:chr5:45845659-45845883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:2-225
               
               
               Cow position:chr5:65941218-65941441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 74

               
               
               Conread position:2-225
               
               
               Cow position:chr5:67243953-67243738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:3-203
               
               
               Cow position:chr5:65967700-65967897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:3-225
               
               
               Cow position:chr5:11229641-11229861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:3-225
               
               
               Cow position:chr5:38833154-38832932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):138, 66

               
               
               Conread position:4-225
               
               
               Cow position:chr5:26467656-26467432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr5:21964315-21964140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:8-212
               
               
               Cow position:chr5:62826726-62826928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:9-225
               
               
               Cow position:chr5:47888686-47888902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:9-225
               
               
               Cow position:chr5:72150275-72150064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:12-225
               
               
               Cow position:chr5:65601479-65601273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):111, 10

               
               
               Conread position:13-212
               
               
               Cow position:chr5:19778557-19778758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:15-225
               
               
               Cow position:chr5:34184249-34184032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:31-225
               
               
               Cow position:chr5:29212947-29212761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:36-224
               
               
               Cow position:chr5:55756426-55756626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:44-279
               
               
               Cow position:chr5:47601810-47601574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:46-225
               
               
               Cow position:chr5:39094545-39094366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:53-213
               
               
               Cow position:chr5:29980004-29980161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:65-211
               
               
               Cow position:chr5:2332540-2332687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:2-139
               
               
               Cow position:chr6:61269358-61269220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr6:15305617-15305446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):137, 27

               
               
               Conread position:2-185
               
               
               Cow position:chr6:38640279-38640094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-214
               
               
               Cow position:chr6:61608558-61608345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:2-223
               
               
               Cow position:chr6:46860121-46860339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:2-223
               
               
               Cow position:chr6:51581206-51581428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:2-224
               
               
               Cow position:chr6:17414401-17414623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:2-224
               
               
               Cow position:chr6:56843203-56842987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:2-225
               
               
               Cow position:chr6:10105933-10106169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr6:13687766-13687984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):139, 144

               
               
               Conread position:2-225
               
               
               Cow position:chr6:24962189-24961972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:2-225
               
               
               Cow position:chr6:31535523-31535744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:3-217
               
               
               Cow position:chr6:120292-120074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 123

               
               
               Conread position:8-174
               
               
               Cow position:chr6:38233999-38233834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:9-222
               
               
               Cow position:chr6:52412900-52412684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:9-225
               
               
               Cow position:chr6:11169739-11169531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 111

               
               
               Conread position:18-212
               
               
               Cow position:chr6:55040184-55040376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:29-225
               
               
               Cow position:chr6:16738042-16737847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 135

               
               
               Conread position:38-202
               
               
               Cow position:chr6:69500338-69500174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:46-225
               
               
               Cow position:chr6:8788035-8788210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:46-225
               
               
               Cow position:chr6:50445756-50445936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 140

               
               
               Conread position:57-222
               
               
               Cow position:chr6:62324986-62324821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:2-161
               
               
               Cow position:chr7:28544225-28544065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:2-164
               
               
               Cow position:chr7:25496775-25496620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):138, 26

               
               
               Conread position:2-174
               
               
               Cow position:chr7:600384-600212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:2-185
               
               
               Cow position:chr7:31094299-31094483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 129

               
               
               Conread position:2-188
               
               
               Cow position:chr7:11958388-11958569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):139, 39

               
               
               Conread position:2-195
               
               
               Cow position:chr7:42593230-42593414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:2-212
               
               
               Cow position:chr7:31497771-31497560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 153

               
               
               Conread position:2-213
               
               
               Cow position:chr7:49751177-49750971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 160

               
               
               Conread position:2-222
               
               
               Cow position:chr7:33990001-33989793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:2-223
               
               
               Cow position:chr7:60483377-60483590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:2-224
               
               
               Cow position:chr7:32372909-32372689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):67, 169

               
               
               Conread position:2-225
               
               
               Cow position:chr7:3283412-3283189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:2-225
               
               
               Cow position:chr7:4720180-4720405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):10, 202

               
               
               Conread position:2-225
               
               
               Cow position:chr7:11714377-11714598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:2-225
               
               
               Cow position:chr7:23205581-23205800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):61, 163

               
               
               Conread position:2-225
               
               
               Cow position:chr7:23456773-23456987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 128

               
               
               Conread position:2-225
               
               
               Cow position:chr7:23568687-23568911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:2-225
               
               
               Cow position:chr7:25015072-25015293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):139, 45

               
               
               Conread position:2-225
               
               
               Cow position:chr7:25023410-25023631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):139, 45

               
               
               Conread position:2-225
               
               
               Cow position:chr7:28584295-28584078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):67, 53

               
               
               Conread position:2-225
               
               
               Cow position:chr7:39415958-39415734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 84

               
               
               Conread position:2-225
               
               
               Cow position:chr7:46856915-46857131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):138, 58

               
               
               Conread position:2-225
               
               
               Cow position:chr7:48714902-48714677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr7:49106151-49106373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):67, 168

               
               
               Conread position:2-225
               
               
               Cow position:chr7:51319849-51319625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 39

               
               
               Conread position:2-225
               
               
               Cow position:chr7:53053355-53053577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:3-166
               
               
               Cow position:chr7:15559734-15559576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 66

               
               
               Conread position:4-225
               
               
               Cow position:chr7:10943511-10943724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:7-223
               
               
               Cow position:chr7:20168593-20168385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:8-163
               
               
               Cow position:chr7:14353746-14353902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:8-205
               
               
               Cow position:chr7:30816245-30816437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:9-235
               
               
               Cow position:chr7:64228851-64229078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:12-225
               
               
               Cow position:chr7:67873231-67873011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:13-224
               
               
               Cow position:chr7:43894867-43894654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:34-225
               
               
               Cow position:chr7:8777220-8777028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:36-225
               
               
               Cow position:chr7:65122358-65122172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:40-218
               
               
               Cow position:chr7:18858358-18858177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:44-187
               
               
               Cow position:chr7:34214603-34214462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:44-221
               
               
               Cow position:chr7:14542050-14542219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:46-235
               
               
               Cow position:chr7:39149948-39149755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:63-225
               
               
               Cow position:chr7:21650091-21649931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 105

               
               
               Conread position:63-225
               
               
               Cow position:chr7:43184790-43184624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:68-225
               
               
               Cow position:chr7:20780136-20779978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:68-235
               
               
               Cow position:chr7:10373477-10373648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:2-143
               
               
               Cow position:chr8:4648869-4649012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:2-143
               
               
               Cow position:chr8:58058760-58058617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:2-146
               
               
               Cow position:chr8:6224417-6224560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 109

               
               
               Conread position:2-168
               
               
               Cow position:chr8:39807616-39807445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:2-205
               
               
               Cow position:chr8:12214024-12213829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:2-205
               
               
               Cow position:chr8:28987716-28987522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 73

               
               
               Conread position:2-213
               
               
               Cow position:chr8:43439629-43439417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:2-217
               
               
               Cow position:chr8:8190047-8190262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):67, 150

               
               
               Conread position:2-218
               
               
               Cow position:chr8:16023622-16023839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:2-224
               
               
               Cow position:chr8:2814641-2814418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:2-224
               
               
               Cow position:chr8:17103404-17103621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:2-224
               
               
               Cow position:chr8:29262794-29262582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:2-224
               
               
               Cow position:chr8:54052325-54052104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:2-225
               
               
               Cow position:chr8:2865921-2865704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):65, 93

               
               
               Conread position:2-225
               
               
               Cow position:chr8:5979960-5979740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:2-225
               
               
               Cow position:chr8:6484914-6485138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 165

               
               
               Conread position:2-225
               
               
               Cow position:chr8:20683989-20683770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):67, 170

               
               
               Conread position:2-225
               
               
               Cow position:chr8:24867725-24867948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:2-225
               
               
               Cow position:chr8:38681898-38681676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:2-225
               
               
               Cow position:chr8:39630792-39630568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:2-229
               
               
               Cow position:chr8:57406778-57406557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:7-225
               
               
               Cow position:chr8:4205937-4205723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:7-225
               
               
               Cow position:chr8:34478132-34477913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:7-278
               
               
               Cow position:chr8:6076539-6076798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):134, 61

               
               
               Conread position:8-211
               
               
               Cow position:chr8:633921-634119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:8-225
               
               
               Cow position:chr8:3891413-3891628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:8-225
               
               
               Cow position:chr8:15394849-15395057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:8-225
               
               
               Cow position:chr8:35966017-35966236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:8-225
               
               
               Cow position:chr8:39721680-39721465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 14

               
               
               Conread position:12-225
               
               
               Cow position:chr8:31776198-31775981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:12-225
               
               
               Cow position:chr8:41627109-41627323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:14-225
               
               
               Cow position:chr8:12058730-12058510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:19-224
               
               
               Cow position:chr8:18057754-18057535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:25-224
               
               
               Cow position:chr8:33994157-33993963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:53-202
               
               
               Cow position:chr8:43027688-43027839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:53-218
               
               
               Cow position:chr8:33693479-33693306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:63-225
               
               
               Cow position:chr8:54031831-54031675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:68-225
               
               
               Cow position:chr8:54572597-54572441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 102

               
               
               Conread position:1-225
               
               
               Cow position:chr9:45285513-45285289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:2-133
               
               
               Cow position:chr9:42509139-42509267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:2-170
               
               
               Cow position:chr9:30123942-30124111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:2-180
               
               
               Cow position:chr9:7634294-7634473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):66, 158

               
               
               Conread position:2-183
               
               
               Cow position:chr9:19067805-19067982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):138, 66

               
               
               Conread position:2-188
               
               
               Cow position:chr9:3738201-3738013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:2-201
               
               
               Cow position:chr9:48628051-48628250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 48

               
               
               Conread position:2-203
               
               
               Cow position:chr9:17799649-17799850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):54, 149

               
               
               Conread position:2-204
               
               
               Cow position:chr9:1938153-1938347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:2-211
               
               
               Cow position:chr9:5442012-5442224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-223
               
               
               Cow position:chr9:13169640-13169428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:2-224
               
               
               Cow position:chr9:20847952-20848177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr9:5219147-5218937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:2-225
               
               
               Cow position:chr9:21460131-21459915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:2-225
               
               
               Cow position:chr9:23388656-23388436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):138, 176

               
               
               Conread position:2-225
               
               
               Cow position:chr9:33119865-33119640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 35

               
               
               Conread position:2-225
               
               
               Cow position:chr9:34286822-34287036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:2-225
               
               
               Cow position:chr9:59013319-59013093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:3-225
               
               
               Cow position:chr9:26279145-26278931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:7-168
               
               
               Cow position:chr9:60027227-60027386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:8-224
               
               
               Cow position:chr9:55287863-55287650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:8-225
               
               
               Cow position:chr9:22152057-22151845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:9-188
               
               
               Cow position:chr9:46235287-46235467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 49

               
               
               Conread position:12-225
               
               
               Cow position:chr9:35202910-35203126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:22-225
               
               
               Cow position:chr9:18073072-18072875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 54

               
               
               Conread position:25-225
               
               
               Cow position:chr9:16182444-16182248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:26-225
               
               
               Cow position:chr9:19637594-19637396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:27-237
               
               
               Cow position:chr9:34310069-34310290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:34-225
               
               
               Cow position:chr9:42998414-42998229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:34-225
               
               
               Cow position:chr9:44108777-44108588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:37-225
               
               
               Cow position:chr9:20989399-20989212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:44-179
               
               
               Cow position:chr9:4341107-4340970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:44-225
               
               
               Cow position:chr9:767091-766908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:46-180
               
               
               Cow position:chr9:40542185-40542320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:49-225
               
               
               Cow position:chr9:37069502-37069327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:52-225
               
               
               Cow position:chr9:55084227-55084055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:63-225
               
               
               Cow position:chr9:32812427-32812590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):78, 104

               
               
               Conread position:1-225
               
               
               Cow position:chrX:2383519-2383302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:2-128
               
               
               Cow position:chrX:1466195-1466069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:2-167
               
               
               Cow position:chrX:40685295-40685463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:2-179
               
               
               Cow position:chrX:5919525-5919352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:2-180
               
               
               Cow position:chrX:34991069-34990890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:2-182
               
               
               Cow position:chrX:38066422-38066597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):138, 63

               
               
               Conread position:2-187
               
               
               Cow position:chrX:5118469-5118654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):139, 39

               
               
               Conread position:2-188
               
               
               Cow position:chrX:21986257-21986446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-223
               
               
               Cow position:chrX:36068048-36067835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:2-224
               
               
               Cow position:chrX:11633715-11633493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 171

               
               
               Conread position:2-224
               
               
               Cow position:chrX:39938490-39938708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:2-225
               
               
               Cow position:chrX:618969-619194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-225
               
               
               Cow position:chrX:6544290-6544070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:2-225
               
               
               Cow position:chrX:13647752-13647970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:2-225
               
               
               Cow position:chrX:17726008-17725788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:2-225
               
               
               Cow position:chrX:34402033-34401811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):67, 181

               
               
               Conread position:2-225
               
               
               Cow position:chrX:37781076-37781304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:2-225
               
               
               Cow position:chrX:38439514-38439288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:2-225
               
               
               Cow position:chrX:41884379-41884604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:2-265
               
               
               Cow position:chrX:14883923-14884190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 261

               
               
               Conread position:3-165
               
               
               Cow position:chrX:43115183-43115021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):137, 58

               
               
               Conread position:3-224
               
               
               Cow position:chrX:31252449-31252230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:3-225
               
               
               Cow position:chrX:26875849-26876069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):66, 175

               
               
               Conread position:3-225
               
               
               Cow position:chrX:31436506-31436296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:3-225
               
               
               Cow position:chrX:43527540-43527317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:4-180
               
               
               Cow position:chrX:13785329-13785508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-225
               
               
               Cow position:chrX:20752281-20752073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:10-225
               
               
               Cow position:chrX:47484239-47484458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:12-221
               
               
               Cow position:chrX:32821052-32820847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:12-225
               
               
               Cow position:chrX:31250411-31250203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:14-224
               
               
               Cow position:chrX:2467905-2467694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:36-235
               
               
               Cow position:chrX:30922186-30921991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:41-225
               
               
               Cow position:chrX:40452212-40452399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:44-225
               
               
               Cow position:chrX:31256859-31256681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:46-225
               
               
               Cow position:chrX:21004672-21004495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:46-225
               
               
               Cow position:chrX:35042216-35042033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:68-225
               
               
               Cow position:chrX:23785631-23785467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:68-225
               
               
               Cow position:chrX:24234507-24234664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 73
Conread position:	1-225
Cow position:	chr1:3661051-3661262 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	160
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	68, 74
Conread position:	2-138
Cow position:	chr1:79640276-79640412 (view UCSC Genome Browser custom track)
Alignm length:	138
Alignm identity:	105
Alignm E-value:	7e-23
Alignm gaps (pig, cow):	67, 122
Conread position:	2-148
Cow position:	chr1:89349977-89349829 (view UCSC Genome Browser custom track)
Alignm length:	150
Alignm identity:	116
Alignm E-value:	9e-26
Alignm gaps (pig, cow):	29, 43
Conread position:	2-166
Cow position:	chr1:70828915-70828752 (view UCSC Genome Browser custom track)
Alignm length:	168
Alignm identity:	124
Alignm E-value:	7e-23
Alignm gaps (pig, cow):	41, 103
Conread position:	2-168
Cow position:	chr1:43703421-43703254 (view UCSC Genome Browser custom track)
Alignm length:	169
Alignm identity:	124
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	67, 26
Conread position:	2-183
Cow position:	chr1:88913332-88913149 (view UCSC Genome Browser custom track)
Alignm length:	186
Alignm identity:	133
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	38, 26
Conread position:	2-188
Cow position:	chr1:20544310-20544122 (view UCSC Genome Browser custom track)
Alignm length:	190
Alignm identity:	136
Alignm E-value:	9e-26
Alignm gaps (pig, cow):	34, 123
Conread position:	2-189
Cow position:	chr1:12978694-12978506 (view UCSC Genome Browser custom track)
Alignm length:	190
Alignm identity:	142
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	67, 47
Conread position:	2-202
Cow position:	chr1:74947105-74947310 (view UCSC Genome Browser custom track)
Alignm length:	208
Alignm identity:	148
Alignm E-value:	8e-25
Alignm gaps (pig, cow):	45, 23
Conread position:	2-221
Cow position:	chr1:56225481-56225273 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	162
Alignm E-value:	5e-30
Alignm gaps (pig, cow):	67, 153
Conread position:	2-224
Cow position:	chr1:44165098-44164873 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	154
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	52, 0
Conread position:	2-225
Cow position:	chr1:13637651-13637877 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	169
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	67, 47
Conread position:	2-229
Cow position:	chr1:4414193-4414418 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	170
Alignm E-value:	1e-38
Alignm gaps (pig, cow):	67, 177
Conread position:	3-225
Cow position:	chr1:100450163-100450391 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	162
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	21, 47
Conread position:	7-225
Cow position:	chr1:41004353-41004574 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	180
Alignm E-value:	0
Alignm gaps (pig, cow):	57, 0
Conread position:	8-177
Cow position:	chr1:85647774-85647944 (view UCSC Genome Browser custom track)
Alignm length:	172
Alignm identity:	134
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	61, 28
Conread position:	9-212
Cow position:	chr1:82443449-82443650 (view UCSC Genome Browser custom track)
Alignm length:	208
Alignm identity:	158
Alignm E-value:	7e-34
Alignm gaps (pig, cow):	39, 18
Conread position:	13-212
Cow position:	chr1:7350549-7350345 (view UCSC Genome Browser custom track)
Alignm length:	205
Alignm identity:	152
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	32, 0
Conread position:	25-221
Cow position:	chr1:4291151-4290956 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	149
Alignm E-value:	5e-30
Alignm gaps (pig, cow):	43, 21
Conread position:	26-224
Cow position:	chr1:74084205-74084397 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	148
Alignm E-value:	8e-25
Alignm gaps (pig, cow):	37, 18