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Cow genome map

           
Conread name:
           
Pig2-133L19
        

               
Conread position:
               
26-286
               

               
Cow position:
               
chr1:95654954-95654682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
47-288
               

               
Cow position:
               
chr1:3244633-3244885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
48-286
               

               
Cow position:
               
chr1:45535485-45535738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr1:16962229-16961904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
50-288
               

               
Cow position:
               
chr1:71643879-71643629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 192
               

               
Conread position:
               
51-274
               

               
Cow position:
               
chr1:51818727-51818962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 119
               

               
Conread position:
               
51-279
               

               
Cow position:
               
chr1:79663879-79663648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 5
               

               
Conread position:
               
51-284
               

               
Cow position:
               
chr1:22836188-22836422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
53-350
               

               
Cow position:
               
chr1:100450396-100450070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
46, 5
               

               
Conread position:
               
54-229
               

               
Cow position:
               
chr1:52506756-52506578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 51
               

               
Conread position:
               
54-337
               

               
Cow position:
               
chr1:75382780-75383070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
44, 131
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr1:62291897-62291598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
54-350
               

               
Cow position:
               
chr1:76019893-76019591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
54-351
               

               
Cow position:
               
chr1:21955585-21955267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 198
               

               
Conread position:
               
55-212
               

               
Cow position:
               
chr1:81363782-81363931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
55-215
               

               
Cow position:
               
chr1:26896035-26895864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
55-245
               

               
Cow position:
               
chr1:87216252-87216452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
55-276
               

               
Cow position:
               
chr1:78794946-78794714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
55-279
               

               
Cow position:
               
chr1:31414169-31413947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
55-280
               

               
Cow position:
               
chr1:11770504-11770266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 168
               

               
Conread position:
               
55-280
               

               
Cow position:
               
chr1:31348120-31347908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
70, 44
               

               
Conread position:
               
55-285
               

               
Cow position:
               
chr1:3323648-3323898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
55, 248
               

               
Conread position:
               
55-288
               

               
Cow position:
               
chr1:31348651-31348403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
55-314
               

               
Cow position:
               
chr1:101551247-101551532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
55-339
               

               
Cow position:
               
chr1:26729517-26729808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
55-341
               

               
Cow position:
               
chr1:55146591-55146895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
44, 91
               

               
Conread position:
               
55-343
               

               
Cow position:
               
chr1:64251262-64250953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
55-344
               

               
Cow position:
               
chr1:73761562-73761260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
44, 64
               

               
Conread position:
               
55-346
               

               
Cow position:
               
chr1:72286260-72285966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 39
               

               
Conread position:
               
55-347
               

               
Cow position:
               
chr1:46218373-46218676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
55-349
               

               
Cow position:
               
chr1:20384831-20384518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
44, 100
               

               
Conread position:
               
55-349
               

               
Cow position:
               
chr1:53424977-53425282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
118, 42
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:1877817-1878126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
44, 177
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:3962894-3962581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:4027651-4027969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
44, 216
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:4290948-4291270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:21460657-21460978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:44125850-44125532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
128, 44
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:49433475-49433158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
41, 190
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:54478114-54478435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:55705464-55705137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:61742177-61741862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
68, 98
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:68845696-68845384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:75744650-75744968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
44, 100
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:82880455-82880750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
44, 8
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:87072494-87072801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
44, 257
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:88618383-88618701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
44, 194
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:89349767-89350071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:94226758-94226449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:95100751-95101044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
44, 176
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:95215396-95215084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 172
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:98360619-98360298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 175
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:98594360-98594670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 191
               

               
Conread position:
               
55-353
               

               
Cow position:
               
chr1:4691382-4691696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
55-356
               

               
Cow position:
               
chr1:55202828-55202517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 98
               

               
Conread position:
               
55-364
               

               
Cow position:
               
chr1:71079167-71078839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
44, 98
               

               
Conread position:
               
55-364
               

               
Cow position:
               
chr1:93528480-93528823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 195
               

               
Conread position:
               
55-366
               

               
Cow position:
               
chr1:53458496-53458818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
55-366
               

               
Cow position:
               
chr1:101834626-101834937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
128, 49
               

               
Conread position:
               
55-367
               

               
Cow position:
               
chr1:62964069-62964389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 96
               

               
Conread position:
               
56-171
               

               
Cow position:
               
chr1:6240400-6240519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-171
               

               
Cow position:
               
chr1:62996285-62996403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
56-178
               

               
Cow position:
               
chr1:26159641-26159512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
56-182
               

               
Cow position:
               
chr1:5990705-5990833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
56-182
               

               
Cow position:
               
chr1:19545309-19545179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
56-182
               

               
Cow position:
               
chr1:64160131-64160260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-182
               

               
Cow position:
               
chr1:71325456-71325327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-182
               

               
Cow position:
               
chr1:73756884-73757008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
56-182
               

               
Cow position:
               
chr1:95071776-95071904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
56-184
               

               
Cow position:
               
chr1:21092882-21093014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
56-184
               

               
Cow position:
               
chr1:65637995-65638131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-188
               

               
Cow position:
               
chr1:24201948-24201821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
56-199
               

               
Cow position:
               
chr1:99792602-99792751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
56-201
               

               
Cow position:
               
chr1:39702621-39702761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
56-203
               

               
Cow position:
               
chr1:43893716-43893868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
56-207
               

               
Cow position:
               
chr1:71691605-71691765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 151
               

               
Conread position:
               
56-209
               

               
Cow position:
               
chr1:30504261-30504428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
56-211
               

               
Cow position:
               
chr1:32631257-32631420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
56-215
               

               
Cow position:
               
chr1:42968527-42968352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-216
               

               
Cow position:
               
chr1:52753375-52753205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
56-216
               

               
Cow position:
               
chr1:85361646-85361824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-219
               

               
Cow position:
               
chr1:20287905-20288085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
56-219
               

               
Cow position:
               
chr1:42053533-42053366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
56-223
               

               
Cow position:
               
chr1:71748216-71748039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-232
               

               
Cow position:
               
chr1:56711831-56711639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
56-243
               

               
Cow position:
               
chr1:69941174-69940978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
40, 183
               

               
Conread position:
               
56-246
               

               
Cow position:
               
chr1:84116192-84116388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
56-246
               

               
Cow position:
               
chr1:91142366-91142164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
51, 186
               

               
Conread position:
               
56-259
               

               
Cow position:
               
chr1:13455934-13456148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-260
               

               
Cow position:
               
chr1:56657829-56658039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
56-263
               

               
Cow position:
               
chr1:45673502-45673725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
56-266
               

               
Cow position:
               
chr1:75967227-75967443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
56-267
               

               
Cow position:
               
chr1:6322001-6322220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-267
               

               
Cow position:
               
chr1:84786561-84786777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 117
               

               
Conread position:
               
56-267
               

               
Cow position:
               
chr1:95050309-95050074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 172
               

               
Conread position:
               
56-269
               

               
Cow position:
               
chr1:55194673-55194453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
56-269
               

               
Cow position:
               
chr1:57900950-57900726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
56-270
               

               
Cow position:
               
chr1:12596110-12595885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
56-271
               

               
Cow position:
               
chr1:81277411-81277194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
56-272
               

               
Cow position:
               
chr1:3776823-3776601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 187
               

               
Conread position:
               
56-273
               

               
Cow position:
               
chr1:5409823-5409596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 185
               

               
Conread position:
               
56-273
               

               
Cow position:
               
chr1:24528808-24528602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
56-273
               

               
Cow position:
               
chr1:98562951-98563181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
56-274
               

               
Cow position:
               
chr1:98557993-98557764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 193
               

               
Conread position:
               
56-276
               

               
Cow position:
               
chr1:61725322-61725092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 167
               

               
Conread position:
               
56-277
               

               
Cow position:
               
chr1:666151-666389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 193
               

               
Conread position:
               
56-277
               

               
Cow position:
               
chr1:11873566-11873338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 96
               

               
Conread position:
               
56-277
               

               
Cow position:
               
chr1:63905683-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
56-277
               

               
Cow position:
               
chr1:71818671-71818439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
56-278
               

               
Cow position:
               
chr1:5873181-5872943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-278
               

               
Cow position:
               
chr1:56748380-56748625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-280
               

               
Cow position:
               
chr1:634982-635220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 190
               

               
Conread position:
               
56-280
               

               
Cow position:
               
chr1:13548199-13547959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 200
               

               
Conread position:
               
56-280
               

               
Cow position:
               
chr1:76222900-76222662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-281
               

               
Cow position:
               
chr1:29671733-29671494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
43, 173
               

               
Conread position:
               
56-281
               

               
Cow position:
               
chr1:44155053-44155276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
56-284
               

               
Cow position:
               
chr1:24655750-24655988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 187
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:1165392-1165630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 178
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:11102493-11102715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 95
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:29627124-29626881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 182
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:31235141-31234900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
43, 186
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:43380238-43379993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
31, 173
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:45007257-45007497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
43, 187
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:47008821-47009064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:53207904-53207674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:57396136-57395905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:57635257-57635493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:61350938-61351175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 172
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:61724234-61723988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
68, 43
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:82504757-82505007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 195
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:88970850-88971086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
41, 172
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:89742221-89741969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 178
               

               
Conread position:
               
56-286
               

               
Cow position:
               
chr1:102647478-102647242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
56-287
               

               
Cow position:
               
chr1:51981018-51981255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
56-287
               

               
Cow position:
               
chr1:63390983-63390734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-288
               

               
Cow position:
               
chr1:8869874-8869625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 145
               

               
Conread position:
               
56-288
               

               
Cow position:
               
chr1:22448796-22448547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
56-288
               

               
Cow position:
               
chr1:44769321-44769075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
56-288
               

               
Cow position:
               
chr1:73561859-73561613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 157
               

               
Conread position:
               
56-288
               

               
Cow position:
               
chr1:102826023-102825785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
47, 187
               

               
Conread position:
               
56-289
               

               
Cow position:
               
chr1:3752151-3751903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 191
               

               
Conread position:
               
56-289
               

               
Cow position:
               
chr1:55135624-55135866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
56-289
               

               
Cow position:
               
chr1:99095154-99095398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 35
               

               
Conread position:
               
56-290
               

               
Cow position:
               
chr1:1801930-1802178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-290
               

               
Cow position:
               
chr1:43448032-43447793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
56-291
               

               
Cow position:
               
chr1:100770948-100770716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
56-293
               

               
Cow position:
               
chr1:53540181-53540429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
56-303
               

               
Cow position:
               
chr1:12871216-12870959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
43, 95
               

               
Conread position:
               
56-304
               

               
Cow position:
               
chr1:25886284-25886024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
43, 140
               

               
Conread position:
               
56-305
               

               
Cow position:
               
chr1:61564583-61564853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
56-307
               

               
Cow position:
               
chr1:24235730-24235457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
56-310
               

               
Cow position:
               
chr1:51628711-51628448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
56-313
               

               
Cow position:
               
chr1:1991634-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
56-314
               

               
Cow position:
               
chr1:13614928-13614664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
56-314
               

               
Cow position:
               
chr1:79278651-79278378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
56-314
               

               
Cow position:
               
chr1:91816983-91816702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 174
               

               
Conread position:
               
56-314
               

               
Cow position:
               
chr1:95035565-95035283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
56-322
               

               
Cow position:
               
chr1:94404007-94404282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
56-326
               

               
Cow position:
               
chr1:60032808-60032532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 175
               

               
Conread position:
               
56-327
               

               
Cow position:
               
chr1:8287823-8287547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 131
               

               
Conread position:
               
56-327
               

               
Cow position:
               
chr1:79590891-79591182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
43, 221
               

               
Conread position:
               
56-329
               

               
Cow position:
               
chr1:79165300-79164998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-330
               

               
Cow position:
               
chr1:15691128-15691420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 99
               

               
Conread position:
               
56-331
               

               
Cow position:
               
chr1:6305078-6304777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 197
               

               
Conread position:
               
56-332
               

               
Cow position:
               
chr1:78091827-78092125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
56-333
               

               
Cow position:
               
chr1:39418328-39418022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
70, 43
               

               
Conread position:
               
56-333
               

               
Cow position:
               
chr1:52956050-52956337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
56-334
               

               
Cow position:
               
chr1:29975807-29975510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
56-335
               

               
Cow position:
               
chr1:4374548-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
43, 88
               

               
Conread position:
               
56-336
               

               
Cow position:
               
chr1:5023948-5023670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
56-337
               

               
Cow position:
               
chr1:35844139-35843834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-337
               

               
Cow position:
               
chr1:40599839-40600138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 38
               

               
Conread position:
               
56-337
               

               
Cow position:
               
chr1:90868645-90868348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
56-337
               

               
Cow position:
               
chr1:92963189-92963488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 219
               

               
Conread position:
               
56-338
               

               
Cow position:
               
chr1:92433809-92434094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
56-340
               

               
Cow position:
               
chr1:18937043-18936741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 213
               

               
Conread position:
               
56-341
               

               
Cow position:
               
chr1:54732667-54732388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
221, 43
               

               
Conread position:
               
56-341
               

               
Cow position:
               
chr1:90640815-90641125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-342
               

               
Cow position:
               
chr1:36931950-36932252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
56-342
               

               
Cow position:
               
chr1:96365466-96365757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
56-343
               

               
Cow position:
               
chr1:42138657-42138957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
56-343
               

               
Cow position:
               
chr1:48444392-48444095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
128, 42
               

               
Conread position:
               
56-343
               

               
Cow position:
               
chr1:85783316-85783616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 196
               

               
Conread position:
               
56-344
               

               
Cow position:
               
chr1:1981319-1981013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
56-344
               

               
Cow position:
               
chr1:6166043-6166340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
56-344
               

               
Cow position:
               
chr1:20204817-20205127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-344
               

               
Cow position:
               
chr1:25793648-25793341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 225
               

               
Conread position:
               
56-344
               

               
Cow position:
               
chr1:34771713-34771403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
56-344
               

               
Cow position:
               
chr1:46940071-46939785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 188
               

               
Conread position:
               
56-344
               

               
Cow position:
               
chr1:53397778-53398075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
56-345
               

               
Cow position:
               
chr1:39427191-39426904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
56-345
               

               
Cow position:
               
chr1:101713908-101714218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 102
               

               
Conread position:
               
56-346
               

               
Cow position:
               
chr1:22728838-22729158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
56-346
               

               
Cow position:
               
chr1:68862826-68863133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 47
               

               
Conread position:
               
56-346
               

               
Cow position:
               
chr1:76470450-76470745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
56-346
               

               
Cow position:
               
chr1:85774250-85774559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 98
               

               
Conread position:
               
56-346
               

               
Cow position:
               
chr1:95017725-95017445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
43, 96
               

               
Conread position:
               
56-346
               

               
Cow position:
               
chr1:98461081-98461388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
56-347
               

               
Cow position:
               
chr1:10064188-10063878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
56-347
               

               
Cow position:
               
chr1:30441747-30442059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
22, 192
               

               
Conread position:
               
56-347
               

               
Cow position:
               
chr1:64189293-64189603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 68
               

               
Conread position:
               
56-347
               

               
Cow position:
               
chr1:70534143-70533836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
43, 195
               

               
Conread position:
               
56-347
               

               
Cow position:
               
chr1:71135943-71136255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 140
               

               
Conread position:
               
56-348
               

               
Cow position:
               
chr1:56229045-56229341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 95
               

               
Conread position:
               
56-349
               

               
Cow position:
               
chr1:5162262-5161950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 112
               

               
Conread position:
               
56-349
               

               
Cow position:
               
chr1:21835739-21836036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
56-349
               

               
Cow position:
               
chr1:51531564-51531856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 36
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:8413-8721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 179
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:1053379-1053685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 132
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:4032425-4032738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 40
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:6941256-6941574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:6958669-6958987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:7971221-7971517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:8349520-8349219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:10778364-10778668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
43, 51
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:11728968-11729281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:11914087-11913773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
43, 308
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:13413817-13414130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
38, 92
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:19145128-19144822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:21787117-21787442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:21954427-21954118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 116
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:22628847-22628545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
70, 187
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:24133265-24132958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:26702417-26702101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
45, 108
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:29935591-29935281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:33719904-33720206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
38, 162
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:34856838-34856523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:35162194-35162516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 200
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:36874806-36875132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:37309720-37309413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 186
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:37322214-37321896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:39069160-39068850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:41252612-41252304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:41696845-41697161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
43, 112
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:42360057-42360393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
43, 324
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:43389257-43388946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
43, 96
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:43505314-43505635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:45555157-45555471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:47233684-47233372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:47658144-47658450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:48105643-48105330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 98
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:48731037-48730726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 8
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:49839298-49839590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:51394210-51394524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:52039427-52039742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 98
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:52052913-52052611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:52496572-52496875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 132
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:52994814-52995132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:53308602-53308288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:54258358-54258672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:55229775-55230081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
40, 162
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:56225266-56225575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:61661516-61661222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:64302443-64302137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:64678488-64678801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 112
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:68253382-68253701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:68818007-68817693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
43, 7
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:68827115-68826806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 191
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:69264612-69264914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:69695218-69694887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
38, 202
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:70538394-70538717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
47, 110
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:72035138-72034819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:72069036-72068729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:73960492-73960806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:74084401-74084086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:74822242-74822557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:74956233-74955915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:78809674-78809981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 95
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:79844259-79844571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
43, 188
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:80336456-80336144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 165
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:80988137-80988451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 303
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:81228549-81228228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 315
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:81355913-81355597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:81913361-81913049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:82337993-82337674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:82884599-82884289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:83747730-83748048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:84239316-84239018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 64
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:86113622-86113295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 36
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:88652421-88652742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
42, 99
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:91066358-91066046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:94212024-94212331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 209
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:95056846-95057151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 98
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:99609156-99609473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 223
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:99642579-99642263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:100400411-100400101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 185
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:100551761-100552081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 189
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:102266476-102266162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chr1:102784751-102785059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
43, 101
               

               
Conread position:
               
56-351
               

               
Cow position:
               
chr1:28176790-28177111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
43, 198
               

               
Conread position:
               
56-351
               

               
Cow position:
               
chr1:51445670-51445993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
56-351
               

               
Cow position:
               
chr1:61392001-61391683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
56-351
               

               
Cow position:
               
chr1:68619145-68618825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
56-351
               

               
Cow position:
               
chr1:70434784-70435105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
56-351
               

               
Cow position:
               
chr1:77720441-77720141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
56-352
               

               
Cow position:
               
chr1:45289083-45288764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
56-352
               

               
Cow position:
               
chr1:49795795-49796100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 98
               

               
Conread position:
               
56-352
               

               
Cow position:
               
chr1:78857532-78857221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
56-352
               

               
Cow position:
               
chr1:98551504-98551827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
56-353
               

               
Cow position:
               
chr1:10942301-10941987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
43, 295
               

               
Conread position:
               
56-353
               

               
Cow position:
               
chr1:10964085-10964399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
43, 295
               

               
Conread position:
               
56-353
               

               
Cow position:
               
chr1:23634110-23633822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
127, 147
               

               
Conread position:
               
56-353
               

               
Cow position:
               
chr1:31934304-31934615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 178
               

               
Conread position:
               
56-353
               

               
Cow position:
               
chr1:57264196-57263900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
56-353
               

               
Cow position:
               
chr1:92437200-92436882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
40, 300
               

               
Conread position:
               
56-355
               

               
Cow position:
               
chr1:97611862-97611546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
43, 116
               

               
Conread position:
               
56-355
               

               
Cow position:
               
chr1:100705923-100706237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 179
               

               
Conread position:
               
56-363
               

               
Cow position:
               
chr1:89381069-89381394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
56-364
               

               
Cow position:
               
chr1:26179024-26178689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 311
               

               
Conread position:
               
56-364
               

               
Cow position:
               
chr1:61884706-61885033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
43, 100
               

               
Conread position:
               
56-364
               

               
Cow position:
               
chr1:71253764-71253434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
56-364
               

               
Cow position:
               
chr1:81613176-81613511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
56-364
               

               
Cow position:
               
chr1:84812146-84811818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
56-364
               

               
Cow position:
               
chr1:90976292-90975969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
43, 61
               

               
Conread position:
               
56-366
               

               
Cow position:
               
chr1:22730552-22730856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
125, 51
               

               
Conread position:
               
56-366
               

               
Cow position:
               
chr1:84240690-84241003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
56-367
               

               
Cow position:
               
chr1:53374226-53374552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
56-367
               

               
Cow position:
               
chr1:93043816-93044142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
56-367
               

               
Cow position:
               
chr1:102349967-102349627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
56-376
               

               
Cow position:
               
chr1:7442775-7443107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
56-391
               

               
Cow position:
               
chr1:20002445-20002086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
57-196
               

               
Cow position:
               
chr1:36613483-36613337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
57-272
               

               
Cow position:
               
chr1:3340729-3340956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
57-276
               

               
Cow position:
               
chr1:33811726-33811952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
69, 39
               

               
Conread position:
               
57-284
               

               
Cow position:
               
chr1:22467722-22467967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
57-286
               

               
Cow position:
               
chr1:4573312-4573551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
57-286
               

               
Cow position:
               
chr1:11226454-11226215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 174
               

               
Conread position:
               
57-286
               

               
Cow position:
               
chr1:41181636-41181876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 100
               

               
Conread position:
               
57-286
               

               
Cow position:
               
chr1:55163714-55163950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
42, 99
               

               
Conread position:
               
57-307
               

               
Cow position:
               
chr1:55260639-55260373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 194
               

               
Conread position:
               
57-332
               

               
Cow position:
               
chr1:73584610-73584322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
57-333
               

               
Cow position:
               
chr1:85596736-85597027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 65
               

               
Conread position:
               
57-343
               

               
Cow position:
               
chr1:20099155-20099465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 114
               

               
Conread position:
               
57-345
               

               
Cow position:
               
chr1:16855899-16855598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
57-346
               

               
Cow position:
               
chr1:42555061-42555368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
68, 39
               

               
Conread position:
               
57-346
               

               
Cow position:
               
chr1:72012012-72011711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
67, 46
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:3924002-3923694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:5135900-5135604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:15547260-15547575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
42, 187
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:21577596-21577914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 178
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:37707177-37706871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 102
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:48580923-48581234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 178
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:53520698-53521021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
42, 191
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:71045546-71045851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:94378825-94379106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr1:95176727-95177043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 102
               

               
Conread position:
               
57-353
               

               
Cow position:
               
chr1:50931177-50930870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
57-366
               

               
Cow position:
               
chr1:78810827-78811160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
58-190
               

               
Cow position:
               
chr1:52329736-52329601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
58-218
               

               
Cow position:
               
chr1:97806585-97806754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
58-260
               

               
Cow position:
               
chr1:4293855-4294063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
58-274
               

               
Cow position:
               
chr1:29901164-29900945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
132, 30
               

               
Conread position:
               
58-275
               

               
Cow position:
               
chr1:15311661-15311884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 178
               

               
Conread position:
               
58-278
               

               
Cow position:
               
chr1:78783339-78783572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
41, 164
               

               
Conread position:
               
58-280
               

               
Cow position:
               
chr1:77620343-77620572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
58-329
               

               
Cow position:
               
chr1:98310854-98311157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
58-332
               

               
Cow position:
               
chr1:96478488-96478788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
58-341
               

               
Cow position:
               
chr1:89485378-89485677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
58-346
               

               
Cow position:
               
chr1:20000956-20000647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
58-349
               

               
Cow position:
               
chr1:54199591-54199291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 240
               

               
Conread position:
               
58-350
               

               
Cow position:
               
chr1:12464871-12464558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
58-350
               

               
Cow position:
               
chr1:24534450-24534151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
58-350
               

               
Cow position:
               
chr1:34159624-34159942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
41, 167
               

               
Conread position:
               
58-350
               

               
Cow position:
               
chr1:41056477-41056784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
58-350
               

               
Cow position:
               
chr1:69539491-69539797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
58-350
               

               
Cow position:
               
chr1:101822705-101822408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
58-364
               

               
Cow position:
               
chr1:53622756-53623074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 168
               

               
Conread position:
               
58-364
               

               
Cow position:
               
chr1:93499415-93499742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
43, 100
               

               
Conread position:
               
58-364
               

               
Cow position:
               
chr1:100800148-100800473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
59-261
               

               
Cow position:
               
chr1:41004574-41004353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
59-263
               

               
Cow position:
               
chr1:98348513-98348304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
59-269
               

               
Cow position:
               
chr1:21500656-21500445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
59-280
               

               
Cow position:
               
chr1:38544654-38544438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
59-338
               

               
Cow position:
               
chr1:44506761-44507067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
59-346
               

               
Cow position:
               
chr1:3137726-3138016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
59-350
               

               
Cow position:
               
chr1:23969243-23968952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
59-350
               

               
Cow position:
               
chr1:40531316-40530998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
59-350
               

               
Cow position:
               
chr1:66430090-66430397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
60-219
               

               
Cow position:
               
chr1:95327358-95327184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
60-266
               

               
Cow position:
               
chr1:32013751-32013966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 168
               

               
Conread position:
               
60-307
               

               
Cow position:
               
chr1:96184213-96183960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
60-346
               

               
Cow position:
               
chr1:101634496-101634814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
60-350
               

               
Cow position:
               
chr1:7739764-7740053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
60-350
               

               
Cow position:
               
chr1:53495258-53495567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
39, 168
               

               
Conread position:
               
60-350
               

               
Cow position:
               
chr1:68763889-68763582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
21, 97
               

               
Conread position:
               
60-352
               

               
Cow position:
               
chr1:101867150-101867458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
60-366
               

               
Cow position:
               
chr1:24597447-24597773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 189
               

               
Conread position:
               
60-367
               

               
Cow position:
               
chr1:75141801-75142119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
61-345
               

               
Cow position:
               
chr1:19885180-19885482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
61-350
               

               
Cow position:
               
chr1:1956532-1956229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
62-234
               

               
Cow position:
               
chr1:53613396-53613214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 37
               

               
Conread position:
               
62-332
               

               
Cow position:
               
chr1:68951428-68951713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
62-346
               

               
Cow position:
               
chr1:63435013-63434704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
62-351
               

               
Cow position:
               
chr1:81868929-81868622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
62-354
               

               
Cow position:
               
chr1:86279211-86279522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 211
               

               
Conread position:
               
63-327
               

               
Cow position:
               
chr1:46030555-46030278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr1:28563771-28563467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr1:55357488-55357193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 173
               

               
Conread position:
               
63-350
               

               
Cow position:
               
chr1:52488165-52487876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 154
               

               
Conread position:
               
63-366
               

               
Cow position:
               
chr1:99570667-99570366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
63, 170
               

               
Conread position:
               
64-288
               

               
Cow position:
               
chr1:43340824-43340579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 179
               

               
Conread position:
               
64-301
               

               
Cow position:
               
chr1:8532417-8532167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 180
               

               
Conread position:
               
64-344
               

               
Cow position:
               
chr1:5597400-5597111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
64-350
               

               
Cow position:
               
chr1:57297280-57297596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
65-180
               

               
Cow position:
               
chr1:58196297-58196180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
65-225
               

               
Cow position:
               
chr1:49753730-49753901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
65-350
               

               
Cow position:
               
chr1:15333677-15333997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chr1:94261347-94261646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
66-182
               

               
Cow position:
               
chr1:7449933-7450050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
66-286
               

               
Cow position:
               
chr1:81470929-81471164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
66-288
               

               
Cow position:
               
chr1:772022-771790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 159
               

               
Conread position:
               
66-342
               

               
Cow position:
               
chr1:71227874-71228190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
66-350
               

               
Cow position:
               
chr1:32001520-32001216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 299
               

               
Conread position:
               
67-243
               

               
Cow position:
               
chr1:51654212-51654402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
70-280
               

               
Cow position:
               
chr1:64421135-64421357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
70-330
               

               
Cow position:
               
chr1:6788485-6788197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 89
               

               
Conread position:
               
70-336
               

               
Cow position:
               
chr1:40192873-40192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
70-343
               

               
Cow position:
               
chr1:95178760-95179053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 170
               

               
Conread position:
               
71-288
               

               
Cow position:
               
chr1:82443651-82443420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
71-347
               

               
Cow position:
               
chr1:9533980-9534265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
72-350
               

               
Cow position:
               
chr1:86110914-86110638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
73-277
               

               
Cow position:
               
chr1:83594000-83593785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 164
               

               
Conread position:
               
73-286
               

               
Cow position:
               
chr1:56674322-56674095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 175
               

               
Conread position:
               
73-350
               

               
Cow position:
               
chr1:83072251-83072547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
74-350
               

               
Cow position:
               
chr1:724543-724846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 74
               

               
Conread position:
               
75-346
               

               
Cow position:
               
chr1:91039367-91039072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
77-343
               

               
Cow position:
               
chr1:43703226-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
77-343
               

               
Cow position:
               
chr1:65318393-65318674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
77-344
               

               
Cow position:
               
chr1:54156929-54156635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 171
               

               
Conread position:
               
80-224
               

               
Cow position:
               
chr1:86578763-86578910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
80-295
               

               
Cow position:
               
chr1:3243753-3243976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 161
               

               
Conread position:
               
82-349
               

               
Cow position:
               
chr1:74947310-74947014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
85-347
               

               
Cow position:
               
chr1:24778159-24777891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
86-343
               

               
Cow position:
               
chr1:102756605-102756334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
86-351
               

               
Cow position:
               
chr1:20667921-20667635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
87-291
               

               
Cow position:
               
chr1:24445807-24445591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
90-350
               

               
Cow position:
               
chr1:101632513-101632231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
32, 72
               

               
Conread position:
               
92-276
               

               
Cow position:
               
chr1:100812742-100812553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 145
               

               
Conread position:
               
92-350
               

               
Cow position:
               
chr1:55429132-55428851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
96-350
               

               
Cow position:
               
chr1:97696572-97696849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 274
               

               
Conread position:
               
97-350
               

               
Cow position:
               
chr1:77683190-77683457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chr1:42545950-42545677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chr1:59518754-59519017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr1:49317663-49317393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
28, 151
               

               
Conread position:
               
98-350
               

               
Cow position:
               
chr1:77880897-77880629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 29
               

               
Conread position:
               
98-350
               

               
Cow position:
               
chr1:101280882-101280632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
98-351
               

               
Cow position:
               
chr1:484632-484361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 145
               

               
Conread position:
               
98-351
               

               
Cow position:
               
chr1:22525719-22525985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
98-364
               

               
Cow position:
               
chr1:24876099-24876384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
99-276
               

               
Cow position:
               
chr1:81638237-81638427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 146
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr1:95557872-95558062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 142
               

               
Conread position:
               
100-286
               

               
Cow position:
               
chr1:80631538-80631729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
100-287
               

               
Cow position:
               
chr1:69127327-69127133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 141
               

               
Conread position:
               
100-345
               

               
Cow position:
               
chr1:63530411-63530659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
5, 84
               

               
Conread position:
               
100-350
               

               
Cow position:
               
chr1:21560870-21561117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 86
               

               
Conread position:
               
100-350
               

               
Cow position:
               
chr1:31608058-31607784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 175
               

               
Conread position:
               
100-350
               

               
Cow position:
               
chr1:38753753-38754028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 270
               

               
Conread position:
               
100-350
               

               
Cow position:
               
chr1:74927716-74927990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 142
               

               
Conread position:
               
100-350
               

               
Cow position:
               
chr1:96472286-96472536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
100-351
               

               
Cow position:
               
chr1:101268168-101267898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 26
               

               
Conread position:
               
102-342
               

               
Cow position:
               
chr1:69540138-69540380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
102-350
               

               
Cow position:
               
chr1:60281208-60281478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
102-350
               

               
Cow position:
               
chr1:85647944-85647676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 52
               

               
Conread position:
               
102-352
               

               
Cow position:
               
chr1:65103475-65103723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
104-333
               

               
Cow position:
               
chr1:101946867-101946625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
104-351
               

               
Cow position:
               
chr1:44075870-44075612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
9, 115
               

               
Conread position:
               
105-288
               

               
Cow position:
               
chr1:51684644-51684840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
76, 191
               

               
Conread position:
               
105-343
               

               
Cow position:
               
chr1:97938810-97939056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
54, 129
               

               
Conread position:
               
108-287
               

               
Cow position:
               
chr1:9470554-9470366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
108-343
               

               
Cow position:
               
chr1:93554687-93554935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
18, 120
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr1:22192607-22192871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
108-350
               

               
Cow position:
               
chr1:96081328-96081585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
18, 131
               

               
Conread position:
               
109-273
               

               
Cow position:
               
chr1:64962824-64962648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 131
               

               
Conread position:
               
109-273
               

               
Cow position:
               
chr1:85826191-85826366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
74, 41
               

               
Conread position:
               
109-351
               

               
Cow position:
               
chr1:91811631-91811884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 46
               

               
Conread position:
               
111-336
               

               
Cow position:
               
chr1:5579906-5580148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
111-350
               

               
Cow position:
               
chr1:41115868-41115613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
111-350
               

               
Cow position:
               
chr1:88913168-88913425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
113-351
               

               
Cow position:
               
chr1:65909375-65909618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 128
               

               
Conread position:
               
114-350
               

               
Cow position:
               
chr1:89448750-89449006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
115-350
               

               
Cow position:
               
chr1:30047740-30047497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
68, 45
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr1:39225069-39224823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
119-286
               

               
Cow position:
               
chr1:93228383-93228556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
119-350
               

               
Cow position:
               
chr1:43311915-43311665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
120-350
               

               
Cow position:
               
chr1:25281792-25281551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 66
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr1:43855161-43855395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
123-286
               

               
Cow position:
               
chr1:48696903-48696740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
123-347
               

               
Cow position:
               
chr1:89230366-89230128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
123-350
               

               
Cow position:
               
chr1:24407025-24406791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 66
               

               
Conread position:
               
123-350
               

               
Cow position:
               
chr1:58036893-58037123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
166, 26
               

               
Conread position:
               
123-350
               

               
Cow position:
               
chr1:85550216-85549972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
123-350
               

               
Cow position:
               
chr1:87197689-87197926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
123-350
               

               
Cow position:
               
chr1:91023606-91023362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
123-363
               

               
Cow position:
               
chr1:31272579-31272323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
124-350
               

               
Cow position:
               
chr1:64572376-64572621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
125-345
               

               
Cow position:
               
chr1:3352838-3352599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
125-350
               

               
Cow position:
               
chr1:18780470-18780223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
134-350
               

               
Cow position:
               
chr1:42869063-42868835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
140-350
               

               
Cow position:
               
chr1:78697893-78697666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
145-350
               

               
Cow position:
               
chr1:6826405-6826193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
43, 6
               

               
Conread position:
               
147-350
               

               
Cow position:
               
chr1:98511813-98512032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 99
               

               
Conread position:
               
149-346
               

               
Cow position:
               
chr1:56225680-56225887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
149-350
               

               
Cow position:
               
chr1:61543032-61542813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 83
               
153-350UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr1:81580066-81580282 (view  custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 161
               
159-350UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:69482044-69481842 (view  custom track)

               
               
               
Alignm length:
206

               
               
               
Alignm identity:
153

               
               
               
Alignm E-value:
6e-25

               
               
               
Alignm gaps (pig, cow):
7, 14
162-338UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:55818961-55819145 (view  custom track)

               
               
               
Alignm length:
188

               
               
               
Alignm identity:
136

               
               
               
Alignm E-value:
1e-21

               
               
               
Alignm gaps (pig, cow):
28, 76

               
               
               Conread position:167-350
               
               
               Cow position:chr1:43822316-43822505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:168-346
               
               
               Cow position:chr1:30504417-30504603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:177-350
               
               
               Cow position:chr1:30189072-30189258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:185-350
               
               
               Cow position:chr1:30418105-30417942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 21

               
               
               Conread position:186-345
               
               
               Cow position:chr1:42541531-42541699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:186-346
               
               
               Cow position:chr1:68672666-68672500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:186-347
               
               
               Cow position:chr1:100576106-100575935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr1:186343-186175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr1:30983557-30983390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):86, 50

               
               
               Conread position:186-350
               
               
               Cow position:chr1:45223513-45223687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr1:48769737-48769908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 48

               
               
               Conread position:186-350
               
               
               Cow position:chr1:50991868-50992039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:186-350
               
               
               Cow position:chr1:100474165-100474340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:186-363
               
               
               Cow position:chr1:65028465-65028653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:187-350
               
               
               Cow position:chr1:98575980-98576152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 169

               
               
               Conread position:189-350
               
               
               Cow position:chr1:33998693-33998862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:191-346
               
               
               Cow position:chr1:101507296-101507461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:192-350
               
               
               Cow position:chr1:62235508-62235341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:201-350
               
               
               Cow position:chr1:2462329-2462482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 6

               
               
               Conread position:205-350
               
               
               Cow position:chr1:83887-84027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:222-346
               
               
               Cow position:chr1:45478891-45478761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:49-276
               
               
               Cow position:chr10:17982937-17983176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:49-349
               
               
               Cow position:chr10:2407355-2407057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:50-181
               
               
               Cow position:chr10:47091803-47091670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:51-276
               
               
               Cow position:chr10:50039171-50039389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):132, 5

               
               
               Conread position:51-350
               
               
               Cow position:chr10:30787856-30787552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:53-349
               
               
               Cow position:chr10:10043336-10043032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:54-363
               
               
               Cow position:chr10:37989067-37989379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:55-220
               
               
               Cow position:chr10:47976647-47976816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:55-228
               
               
               Cow position:chr10:24153239-24153055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 174

               
               
               Conread position:55-242
               
               
               Cow position:chr10:34300266-34300461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):44, 187

               
               
               Conread position:55-249
               
               
               Cow position:chr10:888685-888890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 195

               
               
               Conread position:55-276
               
               
               Cow position:chr10:31266569-31266340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):44, 182

               
               
               Conread position:55-276
               
               
               Cow position:chr10:50200472-50200704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:55-280
               
               
               Cow position:chr10:7367030-7366787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:55-280
               
               
               Cow position:chr10:41941821-41941579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-285
               
               
               Cow position:chr10:11217373-11217600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 132

               
               
               Conread position:55-286
               
               
               Cow position:chr10:32093562-32093807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):39, 242

               
               
               Conread position:55-286
               
               
               Cow position:chr10:41985128-41984885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:55-287
               
               
               Cow position:chr10:65071070-65071315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 174

               
               
               Conread position:55-288
               
               
               Cow position:chr10:49568964-49569205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 216

               
               
               Conread position:55-292
               
               
               Cow position:chr10:46801245-46801004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:55-309
               
               
               Cow position:chr10:37444457-37444194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:55-314
               
               
               Cow position:chr10:31466503-31466786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 178

               
               
               Conread position:55-314
               
               
               Cow position:chr10:56732805-56733073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:55-321
               
               
               Cow position:chr10:10468737-10469027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 169

               
               
               Conread position:55-342
               
               
               Cow position:chr10:35911986-35911691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):44, 140

               
               
               Conread position:55-344
               
               
               Cow position:chr10:15318647-15318956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:55-345
               
               
               Cow position:chr10:59839526-59839216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):44, 50

               
               
               Conread position:55-350
               
               
               Cow position:chr10:2304618-2304315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:55-350
               
               
               Cow position:chr10:2974329-2974011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:55-350
               
               
               Cow position:chr10:15818037-15817718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr10:15872104-15871796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:55-350
               
               
               Cow position:chr10:22321278-22321599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-350
               
               
               Cow position:chr10:22616884-22616565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 201

               
               
               Conread position:55-350
               
               
               Cow position:chr10:31027885-31027566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:55-350
               
               
               Cow position:chr10:47542850-47543152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:55-350
               
               
               Cow position:chr10:48462579-48462267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:55-350
               
               
               Cow position:chr10:58718412-58718728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:55-364
               
               
               Cow position:chr10:52296256-52296587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-366
               
               
               Cow position:chr10:24870924-24871257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 195

               
               
               Conread position:56-163
               
               
               Cow position:chr10:44681278-44681390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-177
               
               
               Cow position:chr10:15867995-15868121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-181
               
               
               Cow position:chr10:42230425-42230549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:56-182
               
               
               Cow position:chr10:6345833-6345967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr10:23376703-23376573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-182
               
               
               Cow position:chr10:39646344-39646213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr10:16985999-16986131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-189
               
               
               Cow position:chr10:41397240-41397379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:56-190
               
               
               Cow position:chr10:40933437-40933578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr10:35715950-35715808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:56-192
               
               
               Cow position:chr10:25509459-25509599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:56-193
               
               
               Cow position:chr10:20446860-20446995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:56-193
               
               
               Cow position:chr10:38942186-38942331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:56-193
               
               
               Cow position:chr10:54936352-54936209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr10:56835039-56835184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr10:58935430-58935291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-201
               
               
               Cow position:chr10:37822967-37822813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 146

               
               
               Conread position:56-214
               
               
               Cow position:chr10:29628190-29628018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-214
               
               
               Cow position:chr10:50390542-50390710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:56-215
               
               
               Cow position:chr10:10699750-10699583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-216
               
               
               Cow position:chr10:30914257-30914422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 146

               
               
               Conread position:56-220
               
               
               Cow position:chr10:57736404-57736224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-226
               
               
               Cow position:chr10:48377885-48377697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-237
               
               
               Cow position:chr10:32928527-32928707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:56-250
               
               
               Cow position:chr10:1719767-1719558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 170

               
               
               Conread position:56-254
               
               
               Cow position:chr10:59675846-59675635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:56-262
               
               
               Cow position:chr10:2394703-2394485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-266
               
               
               Cow position:chr10:14976032-14975812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:56-266
               
               
               Cow position:chr10:60936713-60936923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):125, 58

               
               
               Conread position:56-268
               
               
               Cow position:chr10:6986209-6986432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-269
               
               
               Cow position:chr10:20735468-20735687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 173

               
               
               Conread position:56-271
               
               
               Cow position:chr10:9445253-9445031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-272
               
               
               Cow position:chr10:65000354-65000119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 202

               
               
               Conread position:56-274
               
               
               Cow position:chr10:19678628-19678864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-275
               
               
               Cow position:chr10:15294124-15294359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:56-276
               
               
               Cow position:chr10:5113346-5113568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:56-276
               
               
               Cow position:chr10:20505299-20505538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr10:48388507-48388278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 139

               
               
               Conread position:56-277
               
               
               Cow position:chr10:19402695-19402932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-277
               
               
               Cow position:chr10:52152283-52152522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:56-279
               
               
               Cow position:chr10:6642640-6642884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr10:33891327-33891087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 192

               
               
               Conread position:56-280
               
               
               Cow position:chr10:35802609-35802375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:56-280
               
               
               Cow position:chr10:55580503-55580277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-281
               
               
               Cow position:chr10:37528845-37528607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:56-285
               
               
               Cow position:chr10:34554328-34554090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:56-285
               
               
               Cow position:chr10:57457092-57457336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-286
               
               
               Cow position:chr10:5890010-5889761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 246

               
               
               Conread position:56-286
               
               
               Cow position:chr10:6173120-6173359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:56-286
               
               
               Cow position:chr10:19094408-19094648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:56-286
               
               
               Cow position:chr10:29069916-29070158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 182

               
               
               Conread position:56-286
               
               
               Cow position:chr10:32774876-32775101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):142, 43

               
               
               Conread position:56-286
               
               
               Cow position:chr10:41255748-41255986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:56-287
               
               
               Cow position:chr10:34607318-34607565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-287
               
               
               Cow position:chr10:60032817-60032566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-288
               
               
               Cow position:chr10:6516426-6516177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-288
               
               
               Cow position:chr10:21037066-21037313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:56-288
               
               
               Cow position:chr10:32030064-32029828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-288
               
               
               Cow position:chr10:33867620-33867394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-288
               
               
               Cow position:chr10:38370702-38370450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-288
               
               
               Cow position:chr10:43508755-43508995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:56-289
               
               
               Cow position:chr10:5607404-5607650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-289
               
               
               Cow position:chr10:58690664-58690901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:56-290
               
               
               Cow position:chr10:11487220-11486971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:56-290
               
               
               Cow position:chr10:14817405-14817153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 223

               
               
               Conread position:56-291
               
               
               Cow position:chr10:14849992-14850227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):126, 40

               
               
               Conread position:56-291
               
               
               Cow position:chr10:37512488-37512236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-291
               
               
               Cow position:chr10:47165637-47165877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:56-291
               
               
               Cow position:chr10:51313750-51314008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):40, 176

               
               
               Conread position:56-312
               
               
               Cow position:chr10:14098561-14098295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-312
               
               
               Cow position:chr10:22520406-22520124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-312
               
               
               Cow position:chr10:41737066-41737328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 124

               
               
               Conread position:56-313
               
               
               Cow position:chr10:19104416-19104145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:56-314
               
               
               Cow position:chr10:9287827-9288086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-314
               
               
               Cow position:chr10:10048442-10048711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 138

               
               
               Conread position:56-314
               
               
               Cow position:chr10:43288109-43287833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-314
               
               
               Cow position:chr10:56080414-56080132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:56-314
               
               
               Cow position:chr10:61600457-61600204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:56-322
               
               
               Cow position:chr10:25342352-25342638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-323
               
               
               Cow position:chr10:12919581-12919307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:56-326
               
               
               Cow position:chr10:40106876-40107153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:56-327
               
               
               Cow position:chr10:35767318-35767036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-330
               
               
               Cow position:chr10:24548018-24548306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-330
               
               
               Cow position:chr10:28176633-28176332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-330
               
               
               Cow position:chr10:43438630-43438930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:56-330
               
               
               Cow position:chr10:59588407-59588119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-337
               
               
               Cow position:chr10:26608128-26607850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-337
               
               
               Cow position:chr10:28721550-28721839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:56-337
               
               
               Cow position:chr10:29589080-29588776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:56-337
               
               
               Cow position:chr10:31791499-31791196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):44, 171

               
               
               Conread position:56-337
               
               
               Cow position:chr10:54476872-54477165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:56-338
               
               
               Cow position:chr10:23056322-23056013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:56-338
               
               
               Cow position:chr10:54469623-54469329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:56-343
               
               
               Cow position:chr10:21462001-21462311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:56-344
               
               
               Cow position:chr10:721059-721371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-344
               
               
               Cow position:chr10:2449113-2449421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-344
               
               
               Cow position:chr10:24561227-24560917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-344
               
               
               Cow position:chr10:24785865-24786177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:56-344
               
               
               Cow position:chr10:29279202-29279516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 223

               
               
               Conread position:56-344
               
               
               Cow position:chr10:36896165-36896475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:56-345
               
               
               Cow position:chr10:2462718-2462418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:56-345
               
               
               Cow position:chr10:15462259-15462564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:56-345
               
               
               Cow position:chr10:50609298-50609618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:56-346
               
               
               Cow position:chr10:17863344-17863658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-346
               
               
               Cow position:chr10:22049013-22049327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:56-346
               
               
               Cow position:chr10:22472075-22472397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-346
               
               
               Cow position:chr10:41408047-41408346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:56-346
               
               
               Cow position:chr10:42312668-42312976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-346
               
               
               Cow position:chr10:56475229-56475541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 176

               
               
               Conread position:56-346
               
               
               Cow position:chr10:58556956-58557245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 187

               
               
               Conread position:56-346
               
               
               Cow position:chr10:59152103-59151792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 173

               
               
               Conread position:56-347
               
               
               Cow position:chr10:1978903-1978598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 125

               
               
               Conread position:56-347
               
               
               Cow position:chr10:11009184-11009483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 36

               
               
               Conread position:56-347
               
               
               Cow position:chr10:25699423-25699723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:56-347
               
               
               Cow position:chr10:39110234-39109943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-347
               
               
               Cow position:chr10:40421085-40420774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-347
               
               
               Cow position:chr10:47788804-47789092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:56-347
               
               
               Cow position:chr10:48741397-48741086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-347
               
               
               Cow position:chr10:53934979-53934679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:56-348
               
               
               Cow position:chr10:63276151-63276466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):68, 299

               
               
               Conread position:56-349
               
               
               Cow position:chr10:25588-25899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 307

               
               
               Conread position:56-349
               
               
               Cow position:chr10:8934247-8934546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:56-349
               
               
               Cow position:chr10:10124105-10124417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:56-349
               
               
               Cow position:chr10:35862470-35862153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-349
               
               
               Cow position:chr10:49146293-49146591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr10:1423591-1423907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 161

               
               
               Conread position:56-350
               
               
               Cow position:chr10:1488609-1488908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:56-350
               
               
               Cow position:chr10:2613142-2613443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr10:2849115-2849425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-350
               
               
               Cow position:chr10:2856850-2857123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):232, 55

               
               
               Conread position:56-350
               
               
               Cow position:chr10:4310948-4311249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:56-350
               
               
               Cow position:chr10:5543489-5543174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr10:6235663-6235371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):40, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr10:8093555-8093241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:56-350
               
               
               Cow position:chr10:9576279-9575972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr10:10134738-10135064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr10:10720916-10720596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr10:10752220-10751915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 140

               
               
               Conread position:56-350
               
               
               Cow position:chr10:11080718-11081040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr10:11212872-11213188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr10:11221470-11221779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):103, 42

               
               
               Conread position:56-350
               
               
               Cow position:chr10:13311492-13311809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr10:13586474-13586780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:56-350
               
               
               Cow position:chr10:15115375-15115691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr10:16092975-16093286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr10:16598449-16598764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr10:17175794-17176109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr10:18041945-18042256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-350
               
               
               Cow position:chr10:19372568-19372260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr10:20997517-20997212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:56-350
               
               
               Cow position:chr10:21082155-21082457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr10:21657180-21657497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr10:22341325-22341652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr10:22390349-22390673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr10:22528141-22527825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:56-350
               
               
               Cow position:chr10:23506725-23506415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 269

               
               
               Conread position:56-350
               
               
               Cow position:chr10:23912736-23912436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-350
               
               
               Cow position:chr10:24744888-24745195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 185

               
               
               Conread position:56-350
               
               
               Cow position:chr10:24763239-24763559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr10:26209501-26209171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):38, 224

               
               
               Conread position:56-350
               
               
               Cow position:chr10:26631196-26631483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:56-350
               
               
               Cow position:chr10:27828099-27828398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):115, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr10:28105312-28105003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr10:29251922-29252240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr10:31779508-31779192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:56-350
               
               
               Cow position:chr10:34430455-34430149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr10:34655351-34655032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr10:34897758-34898043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr10:35731766-35731451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr10:35791693-35792002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr10:36489779-36490095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:56-350
               
               
               Cow position:chr10:37014399-37014710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr10:37529509-37529189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr10:37818800-37818481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr10:39227917-39228224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):132, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr10:41626368-41626668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:56-350
               
               
               Cow position:chr10:42636984-42637309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr10:42745673-42745993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:56-350
               
               
               Cow position:chr10:44771416-44771725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 168

               
               
               Conread position:56-350
               
               
               Cow position:chr10:45370815-45371132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr10:45769800-45770120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr10:49169297-49168958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr10:49456316-49456017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-350
               
               
               Cow position:chr10:49846536-49846850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr10:50016232-50015921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr10:50183287-50182977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr10:50359674-50359988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 216

               
               
               Conread position:56-350
               
               
               Cow position:chr10:50534113-50533792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr10:51289014-51289326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 168

               
               
               Conread position:56-350
               
               
               Cow position:chr10:51306086-51306416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 327

               
               
               Conread position:56-350
               
               
               Cow position:chr10:51944122-51944438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-350
               
               
               Cow position:chr10:52046623-52046947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr10:52113905-52113598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr10:53179064-53179355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr10:53336643-53336328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr10:53357656-53357972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr10:53674583-53674902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr10:53973604-53973918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr10:54504362-54504681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr10:54948370-54948059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:56-350
               
               
               Cow position:chr10:57461125-57461433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr10:58259755-58259449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr10:61839360-61839659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-350
               
               
               Cow position:chr10:62286311-62286633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr10:63627973-63628265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:56-350
               
               
               Cow position:chr10:63940535-63940854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr10:64182210-64182519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:56-350
               
               
               Cow position:chr10:64286036-64285718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr10:65132719-65133020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:56-350
               
               
               Cow position:chr10:65424151-65423829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 119

               
               
               Conread position:56-350
               
               
               Cow position:chr10:67627227-67626919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr10:68183171-68182878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:56-351
               
               
               Cow position:chr10:11967085-11966770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:56-351
               
               
               Cow position:chr10:14947027-14947332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-351
               
               
               Cow position:chr10:23886689-23886382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:56-351
               
               
               Cow position:chr10:24732070-24732382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-351
               
               
               Cow position:chr10:30224443-30224760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-351
               
               
               Cow position:chr10:39387220-39387531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:56-351
               
               
               Cow position:chr10:43487471-43487789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-351
               
               
               Cow position:chr10:45729162-45728873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:56-351
               
               
               Cow position:chr10:47773494-47773805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:56-351
               
               
               Cow position:chr10:53248247-53247926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:56-352
               
               
               Cow position:chr10:1749335-1749664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 202

               
               
               Conread position:56-352
               
               
               Cow position:chr10:6505121-6505430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-352
               
               
               Cow position:chr10:22396015-22396331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:56-352
               
               
               Cow position:chr10:49045604-49045917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):103, 68

               
               
               Conread position:56-353
               
               
               Cow position:chr10:6719662-6719979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:56-353
               
               
               Cow position:chr10:8923034-8923359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-355
               
               
               Cow position:chr10:23936243-23936558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-355
               
               
               Cow position:chr10:34175236-34174896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-359
               
               
               Cow position:chr10:32417124-32417439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:56-363
               
               
               Cow position:chr10:1087779-1088107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-364
               
               
               Cow position:chr10:9675696-9675371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:56-364
               
               
               Cow position:chr10:12392843-12392519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:56-364
               
               
               Cow position:chr10:16740297-16739976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 198

               
               
               Conread position:56-364
               
               
               Cow position:chr10:19895159-19895485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-364
               
               
               Cow position:chr10:21422392-21422069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 123

               
               
               Conread position:56-364
               
               
               Cow position:chr10:28671062-28670726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 119

               
               
               Conread position:56-366
               
               
               Cow position:chr10:5151111-5151438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-366
               
               
               Cow position:chr10:29166038-29166365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-366
               
               
               Cow position:chr10:32503210-32503519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-366
               
               
               Cow position:chr10:57786097-57786430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:56-367
               
               
               Cow position:chr10:20095514-20095858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-367
               
               
               Cow position:chr10:20372371-20372040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 259

               
               
               Conread position:56-367
               
               
               Cow position:chr10:61588501-61588168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:56-369
               
               
               Cow position:chr10:37235793-37235460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:57-263
               
               
               Cow position:chr10:25045921-25045709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:57-280
               
               
               Cow position:chr10:9798432-9798197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:57-286
               
               
               Cow position:chr10:19394818-19394588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:57-286
               
               
               Cow position:chr10:61305042-61305266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 171

               
               
               Conread position:57-291
               
               
               Cow position:chr10:35887645-35887396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 234

               
               
               Conread position:57-337
               
               
               Cow position:chr10:60722383-60722096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:57-344
               
               
               Cow position:chr10:31527755-31528040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:57-345
               
               
               Cow position:chr10:20552942-20553256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:57-346
               
               
               Cow position:chr10:32583677-32583984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:57-350
               
               
               Cow position:chr10:6489627-6489948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-350
               
               
               Cow position:chr10:15293033-15293341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:57-350
               
               
               Cow position:chr10:24752917-24753221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 168

               
               
               Conread position:57-350
               
               
               Cow position:chr10:28395531-28395225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:57-350
               
               
               Cow position:chr10:37415546-37415866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:57-350
               
               
               Cow position:chr10:38014134-38014442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):135, 42

               
               
               Conread position:57-350
               
               
               Cow position:chr10:52278488-52278801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr10:54730772-54731088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 278

               
               
               Conread position:58-269
               
               
               Cow position:chr10:64878233-64878004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:58-276
               
               
               Cow position:chr10:31812655-31812441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:58-280
               
               
               Cow position:chr10:54962957-54962726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:58-290
               
               
               Cow position:chr10:27749437-27749677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 178

               
               
               Conread position:58-314
               
               
               Cow position:chr10:25149665-25149933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:58-319
               
               
               Cow position:chr10:1427802-1428085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:58-333
               
               
               Cow position:chr10:35905068-35904779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):12, 184

               
               
               Conread position:58-337
               
               
               Cow position:chr10:30460407-30460717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:58-345
               
               
               Cow position:chr10:48255461-48255154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 185

               
               
               Conread position:58-350
               
               
               Cow position:chr10:3998667-3998986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:58-350
               
               
               Cow position:chr10:12314930-12315222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:58-350
               
               
               Cow position:chr10:13391291-13390971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-350
               
               
               Cow position:chr10:23576305-23576622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-350
               
               
               Cow position:chr10:36001965-36002273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:58-350
               
               
               Cow position:chr10:59010379-59010060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 316

               
               
               Conread position:58-350
               
               
               Cow position:chr10:60960702-60961011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:58-351
               
               
               Cow position:chr10:35901099-35901391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:59-288
               
               
               Cow position:chr10:25882189-25882420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:59-288
               
               
               Cow position:chr10:35857292-35857057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):23, 96

               
               
               Conread position:59-350
               
               
               Cow position:chr10:54848541-54848854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:59-351
               
               
               Cow position:chr10:24308139-24307846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):120, 37

               
               
               Conread position:60-203
               
               
               Cow position:chr10:28835993-28836135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:60-338
               
               
               Cow position:chr10:10963751-10964052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:60-339
               
               
               Cow position:chr10:28152619-28152313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:60-350
               
               
               Cow position:chr10:1976556-1976242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):39, 308

               
               
               Conread position:60-350
               
               
               Cow position:chr10:59675490-59675179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 162

               
               
               Conread position:60-351
               
               
               Cow position:chr10:40164165-40163855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 32

               
               
               Conread position:60-410
               
               
               Cow position:chr10:51696517-51696878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:62-271
               
               
               Cow position:chr10:24871651-24871878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:62-350
               
               
               Cow position:chr10:45379242-45378929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):37, 178

               
               
               Conread position:62-350
               
               
               Cow position:chr10:48317190-48316872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:63-350
               
               
               Cow position:chr10:38512941-38513251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:64-337
               
               
               Cow position:chr10:24744316-24744609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:64-361
               
               
               Cow position:chr10:6435827-6436148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:65-350
               
               
               Cow position:chr10:47412339-47412030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:69-222
               
               
               Cow position:chr10:30106329-30106177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:70-343
               
               
               Cow position:chr10:24022509-24022213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:70-350
               
               
               Cow position:chr10:29920059-29919762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:71-350
               
               
               Cow position:chr10:10148425-10148725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:72-346
               
               
               Cow position:chr10:33733093-33732800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:72-348
               
               
               Cow position:chr10:66194528-66194231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 293

               
               
               Conread position:73-342
               
               
               Cow position:chr10:17844536-17844835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:73-350
               
               
               Cow position:chr10:59664190-59663896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):112, 20

               
               
               Conread position:73-351
               
               
               Cow position:chr10:7816885-7817186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:74-327
               
               
               Cow position:chr10:38739330-38739587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:75-280
               
               
               Cow position:chr10:31000822-31000591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:76-340
               
               
               Cow position:chr10:41254782-41254506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:77-350
               
               
               Cow position:chr10:46184541-46184816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:80-350
               
               
               Cow position:chr10:45871297-45871590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:85-350
               
               
               Cow position:chr10:37534400-37534666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:86-286
               
               
               Cow position:chr10:39304062-39303845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:86-343
               
               
               Cow position:chr10:24780979-24781258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:86-346
               
               
               Cow position:chr10:4183982-4184268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:87-278
               
               
               Cow position:chr10:3985225-3985423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:89-286
               
               
               Cow position:chr10:36285294-36285505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:89-350
               
               
               Cow position:chr10:50135011-50134727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:89-369
               
               
               Cow position:chr10:17022764-17022471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:97-350
               
               
               Cow position:chr10:45657945-45658221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 149

               
               
               Conread position:97-350
               
               
               Cow position:chr10:47690197-47690464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:97-350
               
               
               Cow position:chr10:68926960-68927225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:98-205
               
               
               Cow position:chr10:1196356-1196242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:98-314
               
               
               Cow position:chr10:20391642-20391405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 141

               
               
               Conread position:98-326
               
               
               Cow position:chr10:35653467-35653723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:98-350
               
               
               Cow position:chr10:12486070-12486339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:100-288
               
               
               Cow position:chr10:17836758-17836956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 129

               
               
               Conread position:100-344
               
               
               Cow position:chr10:38429739-38429480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:100-345
               
               
               Cow position:chr10:24276927-24276654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):24, 62

               
               
               Conread position:100-350
               
               
               Cow position:chr10:10120004-10120270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:100-350
               
               
               Cow position:chr10:35779096-35778825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:100-350
               
               
               Cow position:chr10:47651108-47651375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:100-367
               
               
               Cow position:chr10:40737808-40738085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:101-350
               
               
               Cow position:chr10:24375359-24375620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:104-350
               
               
               Cow position:chr10:32834627-32834897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:104-350
               
               
               Cow position:chr10:58612808-58612565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:104-350
               
               
               Cow position:chr10:63883762-63884015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:105-350
               
               
               Cow position:chr10:68829470-68829209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:106-350
               
               
               Cow position:chr10:56180391-56180640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:108-273
               
               
               Cow position:chr10:37400096-37400274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:108-347
               
               
               Cow position:chr10:29339571-29339323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:109-277
               
               
               Cow position:chr10:39139999-39140176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:109-341
               
               
               Cow position:chr10:42893150-42892903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:109-345
               
               
               Cow position:chr10:67288115-67288362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:109-350
               
               
               Cow position:chr10:52695914-52695650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:110-257
               
               
               Cow position:chr10:69272569-69272724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:111-350
               
               
               Cow position:chr10:4109409-4109664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:111-350
               
               
               Cow position:chr10:11463850-11463591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:112-328
               
               
               Cow position:chr10:33240857-33240625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:113-346
               
               
               Cow position:chr10:60237273-60237023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:113-350
               
               
               Cow position:chr10:19549670-19549411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:115-291
               
               
               Cow position:chr10:44764681-44764495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:116-350
               
               
               Cow position:chr10:58451538-58451298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:122-364
               
               
               Cow position:chr10:2202294-2202037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 204

               
               
               Conread position:123-340
               
               
               Cow position:chr10:4197827-4198040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):166, 62

               
               
               Conread position:123-350
               
               
               Cow position:chr10:4164099-4164346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:123-367
               
               
               Cow position:chr10:69587848-69587583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:124-334
               
               
               Cow position:chr10:47724780-47725007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:124-347
               
               
               Cow position:chr10:6532319-6532085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:125-362
               
               
               Cow position:chr10:2537928-2538180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):61, 118

               
               
               Conread position:128-348
               
               
               Cow position:chr10:39587023-39586783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:130-350
               
               
               Cow position:chr10:19191615-19191830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:132-350
               
               
               Cow position:chr10:6543563-6543802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:145-351
               
               
               Cow position:chr10:15309544-15309325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:148-350
               
               
               Cow position:chr10:6663882-6664110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:151-352
               
               
               Cow position:chr10:41132131-41132342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:153-337
               
               
               Cow position:chr10:52069615-52069421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:154-350
               
               
               Cow position:chr10:13315803-13316015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:154-350
               
               
               Cow position:chr10:33084565-33084364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:157-350
               
               
               Cow position:chr10:3364312-3364106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:186-344
               
               
               Cow position:chr10:19098741-19098911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):48, 43

               
               
               Conread position:186-350
               
               
               Cow position:chr10:15424957-15425126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):97, 45

               
               
               Conread position:186-350
               
               
               Cow position:chr10:15427163-15427006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:186-350
               
               
               Cow position:chr10:22888912-22888738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr10:29526989-29526825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:186-350
               
               
               Cow position:chr10:42230693-42230869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr10:52881716-52881543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 166

               
               
               Conread position:186-350
               
               
               Cow position:chr10:55396074-55395900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:186-355
               
               
               Cow position:chr10:58935265-58935088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:186-356
               
               
               Cow position:chr10:533433-533614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:187-350
               
               
               Cow position:chr10:517195-517359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:188-350
               
               
               Cow position:chr10:48178259-48178423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:192-350
               
               
               Cow position:chr10:13918343-13918183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:204-347
               
               
               Cow position:chr10:48282633-48282478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:228-344
               
               
               Cow position:chr10:50042553-50042673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:233-350
               
               
               Cow position:chr10:32080224-32080348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:28-180
               
               
               Cow position:chr11:6328981-6329143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:40-350
               
               
               Cow position:chr11:70422819-70422514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:49-336
               
               
               Cow position:chr11:17192522-17192212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:51-291
               
               
               Cow position:chr11:16910606-16910350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 194

               
               
               Conread position:51-347
               
               
               Cow position:chr11:8840979-8840676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:52-351
               
               
               Cow position:chr11:33348423-33348103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 192

               
               
               Conread position:54-182
               
               
               Cow position:chr11:10294359-10294487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:55-184
               
               
               Cow position:chr11:37118250-37118387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:55-187
               
               
               Cow position:chr11:16795387-16795251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:55-264
               
               
               Cow position:chr11:71309764-71309550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 144

               
               
               Conread position:55-276
               
               
               Cow position:chr11:62965789-62965549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 198

               
               
               Conread position:55-285
               
               
               Cow position:chr11:8827544-8827786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 240

               
               
               Conread position:55-286
               
               
               Cow position:chr11:18341274-18341033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):44, 144

               
               
               Conread position:55-286
               
               
               Cow position:chr11:83196263-83196505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-314
               
               
               Cow position:chr11:4323131-4323404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:55-330
               
               
               Cow position:chr11:42358889-42359177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:55-336
               
               
               Cow position:chr11:70273065-70273375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):44, 195

               
               
               Conread position:55-338
               
               
               Cow position:chr11:30912228-30911933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-347
               
               
               Cow position:chr11:84774880-84775153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:55-348
               
               
               Cow position:chr11:55744238-55744547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 174

               
               
               Conread position:55-350
               
               
               Cow position:chr11:10388830-10388543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 177

               
               
               Conread position:55-350
               
               
               Cow position:chr11:22932205-22931903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:55-350
               
               
               Cow position:chr11:28643846-28644170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:55-350
               
               
               Cow position:chr11:50072726-50073020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:55-350
               
               
               Cow position:chr11:54334099-54334411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:55-350
               
               
               Cow position:chr11:71868839-71868521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:55-350
               
               
               Cow position:chr11:86926155-86925879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:55-355
               
               
               Cow position:chr11:9221961-9221644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:55-364
               
               
               Cow position:chr11:8339640-8339322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:55-364
               
               
               Cow position:chr11:17083533-17083212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:55-364
               
               
               Cow position:chr11:34962826-34963168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:55-364
               
               
               Cow position:chr11:58990275-58990590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 172

               
               
               Conread position:56-182
               
               
               Cow position:chr11:16342476-16342345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-182
               
               
               Cow position:chr11:75510468-75510336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-186
               
               
               Cow position:chr11:31885286-31885418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-192
               
               
               Cow position:chr11:3241127-3241267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-193
               
               
               Cow position:chr11:41438459-41438313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-196
               
               
               Cow position:chr11:18371675-18371534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:56-215
               
               
               Cow position:chr11:39057404-39057567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:56-216
               
               
               Cow position:chr11:33001765-33001932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:56-217
               
               
               Cow position:chr11:84890987-84890809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-220
               
               
               Cow position:chr11:51756081-51756254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-223
               
               
               Cow position:chr11:7248111-7247935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr11:57111543-57111357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:56-235
               
               
               Cow position:chr11:27462619-27462431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-241
               
               
               Cow position:chr11:35276066-35276267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-242
               
               
               Cow position:chr11:19508063-19508261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-259
               
               
               Cow position:chr11:43913987-43914197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:56-260
               
               
               Cow position:chr11:75748200-75748417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-263
               
               
               Cow position:chr11:49105823-49106043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-268
               
               
               Cow position:chr11:58103009-58102784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-273
               
               
               Cow position:chr11:71455553-71455788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 195

               
               
               Conread position:56-273
               
               
               Cow position:chr11:77207814-77208038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-276
               
               
               Cow position:chr11:8105548-8105784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 164

               
               
               Conread position:56-276
               
               
               Cow position:chr11:12528837-12528607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-276
               
               
               Cow position:chr11:31900814-31901045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-276
               
               
               Cow position:chr11:41577243-41577021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-276
               
               
               Cow position:chr11:47165372-47165142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-276
               
               
               Cow position:chr11:47586580-47586351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:56-276
               
               
               Cow position:chr11:62808883-62808653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-276
               
               
               Cow position:chr11:63516589-63516826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:56-276
               
               
               Cow position:chr11:65857623-65857859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 195

               
               
               Conread position:56-276
               
               
               Cow position:chr11:77241139-77241369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:56-277
               
               
               Cow position:chr11:53719710-53719944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:56-279
               
               
               Cow position:chr11:27386574-27386337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:56-279
               
               
               Cow position:chr11:37068538-37068315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-279
               
               
               Cow position:chr11:85764717-85764937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-280
               
               
               Cow position:chr11:2050345-2050582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 176

               
               
               Conread position:56-280
               
               
               Cow position:chr11:16251483-16251241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-280
               
               
               Cow position:chr11:26483484-26483715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-286
               
               
               Cow position:chr11:1849400-1849163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:56-286
               
               
               Cow position:chr11:3303602-3303829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:56-286
               
               
               Cow position:chr11:7333956-7333712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-286
               
               
               Cow position:chr11:14094659-14094412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:56-286
               
               
               Cow position:chr11:17860388-17860148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 180

               
               
               Conread position:56-286
               
               
               Cow position:chr11:32377953-32378196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-286
               
               
               Cow position:chr11:34616034-34616266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:56-286
               
               
               Cow position:chr11:40486168-40485927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:56-286
               
               
               Cow position:chr11:48932818-48932579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-286
               
               
               Cow position:chr11:64029491-64029255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-286
               
               
               Cow position:chr11:75480261-75480012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 246

               
               
               Conread position:56-286
               
               
               Cow position:chr11:79728908-79728660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-286
               
               
               Cow position:chr11:85723467-85723705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 235

               
               
               Conread position:56-287
               
               
               Cow position:chr11:4436098-4436329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-287
               
               
               Cow position:chr11:21549261-21549490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-288
               
               
               Cow position:chr11:26535540-26535781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:56-288
               
               
               Cow position:chr11:48697213-48697459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 167

               
               
               Conread position:56-288
               
               
               Cow position:chr11:77766835-77766584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:56-291
               
               
               Cow position:chr11:2309639-2309885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-291
               
               
               Cow position:chr11:6400307-6400055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-291
               
               
               Cow position:chr11:17112861-17112617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-291
               
               
               Cow position:chr11:81174655-81174900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-299
               
               
               Cow position:chr11:6154177-6154439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-314
               
               
               Cow position:chr11:39115259-39115539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):40, 175

               
               
               Conread position:56-314
               
               
               Cow position:chr11:70459340-70459601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-315
               
               
               Cow position:chr11:30596762-30597040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):129, 38

               
               
               Conread position:56-325
               
               
               Cow position:chr11:59463870-59463581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-326
               
               
               Cow position:chr11:2832905-2832633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:56-328
               
               
               Cow position:chr11:24937427-24937726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 146

               
               
               Conread position:56-334
               
               
               Cow position:chr11:30120896-30120595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-335
               
               
               Cow position:chr11:40258636-40258344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-338
               
               
               Cow position:chr11:34032432-34032132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-338
               
               
               Cow position:chr11:46746400-46746704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-340
               
               
               Cow position:chr11:27939252-27939555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 298

               
               
               Conread position:56-340
               
               
               Cow position:chr11:67747047-67747357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-343
               
               
               Cow position:chr11:9837331-9837038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-343
               
               
               Cow position:chr11:81162666-81162357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-344
               
               
               Cow position:chr11:13043376-13043069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 182

               
               
               Conread position:56-344
               
               
               Cow position:chr11:35881677-35881987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:56-344
               
               
               Cow position:chr11:36647126-36647420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-344
               
               
               Cow position:chr11:36986727-36987026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:56-344
               
               
               Cow position:chr11:41986278-41985969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-344
               
               
               Cow position:chr11:61348675-61348951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-344
               
               
               Cow position:chr11:67236173-67236475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 149

               
               
               Conread position:56-346
               
               
               Cow position:chr11:24601736-24602049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-346
               
               
               Cow position:chr11:47899042-47899347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-346
               
               
               Cow position:chr11:55761644-55761947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:56-346
               
               
               Cow position:chr11:64904761-64905076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-347
               
               
               Cow position:chr11:13040398-13040092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 154

               
               
               Conread position:56-347
               
               
               Cow position:chr11:18698640-18698959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-347
               
               
               Cow position:chr11:39499142-39499436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):115, 37

               
               
               Conread position:56-347
               
               
               Cow position:chr11:43430681-43430377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-347
               
               
               Cow position:chr11:50951316-50951634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 307

               
               
               Conread position:56-347
               
               
               Cow position:chr11:51144483-51144793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr11:56821491-56821163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-347
               
               
               Cow position:chr11:61427379-61427672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-347
               
               
               Cow position:chr11:63434290-63433980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:56-347
               
               
               Cow position:chr11:80530136-80530438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:56-348
               
               
               Cow position:chr11:2917814-2917506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-349
               
               
               Cow position:chr11:30708268-30708584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):44, 286

               
               
               Conread position:56-350
               
               
               Cow position:chr11:1362715-1362385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr11:2281524-2281242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 169

               
               
               Conread position:56-350
               
               
               Cow position:chr11:3833582-3833281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:56-350
               
               
               Cow position:chr11:7415081-7414793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:56-350
               
               
               Cow position:chr11:7924824-7924512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:56-350
               
               
               Cow position:chr11:11125429-11125746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr11:13499780-13500097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):68, 312

               
               
               Conread position:56-350
               
               
               Cow position:chr11:17227874-17227562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr11:17278897-17278593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr11:17321423-17321733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr11:18484394-18484106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr11:18572569-18572883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-350
               
               
               Cow position:chr11:18707048-18706742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr11:19247429-19247118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-350
               
               
               Cow position:chr11:20602005-20602309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr11:21894388-21894080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:56-350
               
               
               Cow position:chr11:23128774-23128457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr11:23138296-23137971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-350
               
               
               Cow position:chr11:24967226-24967523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:56-350
               
               
               Cow position:chr11:27248257-27248573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr11:30354832-30355141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 129

               
               
               Conread position:56-350
               
               
               Cow position:chr11:30475764-30476081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):45, 190

               
               
               Conread position:56-350
               
               
               Cow position:chr11:30924918-30925236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 299

               
               
               Conread position:56-350
               
               
               Cow position:chr11:33310737-33311060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):68, 165

               
               
               Conread position:56-350
               
               
               Cow position:chr11:33413999-33414318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-350
               
               
               Cow position:chr11:33526841-33527134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):226, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr11:34113040-34113348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:56-350
               
               
               Cow position:chr11:35154062-35153741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr11:35363260-35363564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-350
               
               
               Cow position:chr11:35684732-35684418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr11:35874219-35873920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:56-350
               
               
               Cow position:chr11:36182454-36182776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr11:36659047-36658740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr11:36799533-36799226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-350
               
               
               Cow position:chr11:40458886-40459190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr11:41809712-41809410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 168

               
               
               Conread position:56-350
               
               
               Cow position:chr11:42016873-42016558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr11:42083245-42083551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:56-350
               
               
               Cow position:chr11:44636995-44636671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr11:44642520-44642209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr11:45631999-45631683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr11:45898289-45897967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:56-350
               
               
               Cow position:chr11:46413342-46413654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr11:46748101-46747779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr11:48271960-48272283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr11:48474474-48474786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:56-350
               
               
               Cow position:chr11:49148814-49149132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr11:49152719-49153031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 173

               
               
               Conread position:56-350
               
               
               Cow position:chr11:49934976-49934648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr11:53147775-53147449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr11:53553017-53553298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):128, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr11:53778378-53778698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-350
               
               
               Cow position:chr11:55117238-55117526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 141

               
               
               Conread position:56-350
               
               
               Cow position:chr11:55333674-55333991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr11:56654312-56654638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr11:61454769-61454435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 331

               
               
               Conread position:56-350
               
               
               Cow position:chr11:62155392-62155720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):70, 323

               
               
               Conread position:56-350
               
               
               Cow position:chr11:62620150-62620459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr11:63469648-63469958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:56-350
               
               
               Cow position:chr11:65495562-65495257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:56-350
               
               
               Cow position:chr11:67600533-67600867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 123

               
               
               Conread position:56-350
               
               
               Cow position:chr11:67804514-67804825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 173

               
               
               Conread position:56-350
               
               
               Cow position:chr11:68910082-68909773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 242

               
               
               Conread position:56-350
               
               
               Cow position:chr11:69119065-69119376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr11:72870690-72870986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 154

               
               
               Conread position:56-350
               
               
               Cow position:chr11:73354288-73353977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-350
               
               
               Cow position:chr11:73924793-73924479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr11:76114420-76114725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr11:76606451-76606755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr11:77128434-77128743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):127, 31

               
               
               Conread position:56-350
               
               
               Cow position:chr11:77705531-77705833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr11:77751002-77750690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:56-350
               
               
               Cow position:chr11:80820233-80819922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr11:80923569-80923241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr11:82940852-82940542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr11:84385880-84385557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-351
               
               
               Cow position:chr11:23251838-23251509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):43, 205

               
               
               Conread position:56-352
               
               
               Cow position:chr11:58588110-58588429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-355
               
               
               Cow position:chr11:3393445-3393122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-355
               
               
               Cow position:chr11:63065419-63065741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:56-362
               
               
               Cow position:chr11:34467368-34467662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-364
               
               
               Cow position:chr11:40947-41278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:56-364
               
               
               Cow position:chr11:259413-259075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:56-364
               
               
               Cow position:chr11:22978094-22977776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:56-364
               
               
               Cow position:chr11:60470414-60470100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):49, 201

               
               
               Conread position:56-364
               
               
               Cow position:chr11:63847615-63847943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-364
               
               
               Cow position:chr11:65826966-65826652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:56-366
               
               
               Cow position:chr11:1380460-1380773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:56-366
               
               
               Cow position:chr11:34120963-34121298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-367
               
               
               Cow position:chr11:7589956-7590287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-367
               
               
               Cow position:chr11:25791927-25791596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 188

               
               
               Conread position:56-367
               
               
               Cow position:chr11:36848697-36849016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-367
               
               
               Cow position:chr11:50153053-50152714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-368
               
               
               Cow position:chr11:10095109-10095443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 187

               
               
               Conread position:56-369
               
               
               Cow position:chr11:15467235-15467559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 129

               
               
               Conread position:57-193
               
               
               Cow position:chr11:81300846-81300703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 112

               
               
               Conread position:57-197
               
               
               Cow position:chr11:9234394-9234538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:57-276
               
               
               Cow position:chr11:48901311-48901084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:57-276
               
               
               Cow position:chr11:68570905-68570670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:57-279
               
               
               Cow position:chr11:70609554-70609790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-281
               
               
               Cow position:chr11:30110734-30110966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 128

               
               
               Conread position:57-286
               
               
               Cow position:chr11:10076542-10076776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:57-286
               
               
               Cow position:chr11:25620629-25620389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 202

               
               
               Conread position:57-286
               
               
               Cow position:chr11:36113923-36114164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 182

               
               
               Conread position:57-286
               
               
               Cow position:chr11:53130578-53130821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 240

               
               
               Conread position:57-344
               
               
               Cow position:chr11:5032011-5031699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:57-344
               
               
               Cow position:chr11:30879446-30879744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 182

               
               
               Conread position:57-346
               
               
               Cow position:chr11:22499585-22499288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-346
               
               
               Cow position:chr11:34830013-34829707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:57-348
               
               
               Cow position:chr11:26144318-26144016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):102, 39

               
               
               Conread position:57-350
               
               
               Cow position:chr11:377882-377559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-350
               
               
               Cow position:chr11:12111701-12111376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-350
               
               
               Cow position:chr11:17831461-17831139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 184

               
               
               Conread position:57-350
               
               
               Cow position:chr11:20761611-20761925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-350
               
               
               Cow position:chr11:30934192-30934499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:57-350
               
               
               Cow position:chr11:36112184-36112502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):42, 193

               
               
               Conread position:57-350
               
               
               Cow position:chr11:38236010-38236333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-350
               
               
               Cow position:chr11:40792927-40792623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:57-350
               
               
               Cow position:chr11:43897904-43898221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr11:59872692-59873011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:57-350
               
               
               Cow position:chr11:63482659-63482348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:57-350
               
               
               Cow position:chr11:71168811-71168522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:57-350
               
               
               Cow position:chr11:73512653-73512360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:57-350
               
               
               Cow position:chr11:77758994-77758679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:57-351
               
               
               Cow position:chr11:8988463-8988147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:57-364
               
               
               Cow position:chr11:62151115-62150795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:57-364
               
               
               Cow position:chr11:83066262-83066586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-368
               
               
               Cow position:chr11:47544894-47545233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:58-217
               
               
               Cow position:chr11:25165211-25165383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:58-280
               
               
               Cow position:chr11:2514825-2514591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:58-281
               
               
               Cow position:chr11:62979245-62979494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-309
               
               
               Cow position:chr11:42793208-42792932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-312
               
               
               Cow position:chr11:37347242-37347515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:58-319
               
               
               Cow position:chr11:24584948-24585227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:58-345
               
               
               Cow position:chr11:62880856-62880554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:58-346
               
               
               Cow position:chr11:42044223-42043918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 300

               
               
               Conread position:58-347
               
               
               Cow position:chr11:47125333-47125623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:58-350
               
               
               Cow position:chr11:11232685-11232373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:58-350
               
               
               Cow position:chr11:30639181-30638867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:58-350
               
               
               Cow position:chr11:33754132-33753830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:58-350
               
               
               Cow position:chr11:38638888-38639194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:58-350
               
               
               Cow position:chr11:44222668-44222968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 52

               
               
               Conread position:58-350
               
               
               Cow position:chr11:78381279-78380983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):119, 38

               
               
               Conread position:58-350
               
               
               Cow position:chr11:83230620-83230318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:58-351
               
               
               Cow position:chr11:64638756-64638442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:58-352
               
               
               Cow position:chr11:32436096-32436418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 191

               
               
               Conread position:59-259
               
               
               Cow position:chr11:4384393-4384601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:59-273
               
               
               Cow position:chr11:58459895-58460107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 7

               
               
               Conread position:59-284
               
               
               Cow position:chr11:21728499-21728269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:59-286
               
               
               Cow position:chr11:18389094-18388865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):40, 106

               
               
               Conread position:59-344
               
               
               Cow position:chr11:18086569-18086271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):66, 169

               
               
               Conread position:59-355
               
               
               Cow position:chr11:58400032-58400336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:60-182
               
               
               Cow position:chr11:22103524-22103652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:60-281
               
               
               Cow position:chr11:18210579-18210344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:60-335
               
               
               Cow position:chr11:65409388-65409086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:60-350
               
               
               Cow position:chr11:43361027-43360701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 249

               
               
               Conread position:60-350
               
               
               Cow position:chr11:77546188-77546497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):39, 165

               
               
               Conread position:60-364
               
               
               Cow position:chr11:3282821-3283122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:60-364
               
               
               Cow position:chr11:10213798-10213472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:61-342
               
               
               Cow position:chr11:2509525-2509231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:62-280
               
               
               Cow position:chr11:18591662-18591431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:62-343
               
               
               Cow position:chr11:74316477-74316785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:62-346
               
               
               Cow position:chr11:3233852-3234154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 174

               
               
               Conread position:63-353
               
               
               Cow position:chr11:17574548-17574264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:64-344
               
               
               Cow position:chr11:44234128-44234432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:64-350
               
               
               Cow position:chr11:29960078-29960378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:67-350
               
               
               Cow position:chr11:81406381-81406085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 89

               
               
               Conread position:67-352
               
               
               Cow position:chr11:19501001-19500707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:70-273
               
               
               Cow position:chr11:21830573-21830352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:71-338
               
               
               Cow position:chr11:23586416-23586709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:71-342
               
               
               Cow position:chr11:39462398-39462698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:71-353
               
               
               Cow position:chr11:82108107-82107816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:71-365
               
               
               Cow position:chr11:15772942-15772617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):28, 305

               
               
               Conread position:72-329
               
               
               Cow position:chr11:61859118-61858841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):27, 166

               
               
               Conread position:73-330
               
               
               Cow position:chr11:36766444-36766710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:73-345
               
               
               Cow position:chr11:65762814-65762513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:73-347
               
               
               Cow position:chr11:16233148-16232855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:74-347
               
               
               Cow position:chr11:52983474-52983755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:74-350
               
               
               Cow position:chr11:34145133-34144842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:76-327
               
               
               Cow position:chr11:38874617-38874342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:80-352
               
               
               Cow position:chr11:72375899-72375591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:81-189
               
               
               Cow position:chr11:83033910-83033795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:81-335
               
               
               Cow position:chr11:36286489-36286763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:82-364
               
               
               Cow position:chr11:68905277-68904979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 68

               
               
               Conread position:86-350
               
               
               Cow position:chr11:38334310-38334605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 165

               
               
               Conread position:87-285
               
               
               Cow position:chr11:57171028-57170823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:87-346
               
               
               Cow position:chr11:67246601-67246864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:90-350
               
               
               Cow position:chr11:63909853-63909584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:92-352
               
               
               Cow position:chr11:16907236-16906966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):94, 59

               
               
               Conread position:95-280
               
               
               Cow position:chr11:18399526-18399325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 154

               
               
               Conread position:98-280
               
               
               Cow position:chr11:48042230-48042032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:98-350
               
               
               Cow position:chr11:37804745-37804472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 267

               
               
               Conread position:99-359
               
               
               Cow position:chr11:7394955-7395220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):6, 25

               
               
               Conread position:100-332
               
               
               Cow position:chr11:5075408-5075163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:100-335
               
               
               Cow position:chr11:49231688-49231941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 126

               
               
               Conread position:100-347
               
               
               Cow position:chr11:14941771-14941531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:100-348
               
               
               Cow position:chr11:48383341-48383600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 143

               
               
               Conread position:100-350
               
               
               Cow position:chr11:65607879-65607606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:100-350
               
               
               Cow position:chr11:71493046-71492779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):25, 143

               
               
               Conread position:100-353
               
               
               Cow position:chr11:77118524-77118784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:100-367
               
               
               Cow position:chr11:41215558-41215831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:103-305
               
               
               Cow position:chr11:65843274-65843068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:103-350
               
               
               Cow position:chr11:71501318-71501049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:104-288
               
               
               Cow position:chr11:2811913-2811719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:105-350
               
               
               Cow position:chr11:31506674-31506932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:107-314
               
               
               Cow position:chr11:38670501-38670727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:107-344
               
               
               Cow position:chr11:38577950-38577702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:107-350
               
               
               Cow position:chr11:9270909-9270644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):18, 253

               
               
               Conread position:108-286
               
               
               Cow position:chr11:21428166-21427985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:108-350
               
               
               Cow position:chr11:61958925-61958663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:108-350
               
               
               Cow position:chr11:70086144-70086415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):18, 234

               
               
               Conread position:108-350
               
               
               Cow position:chr11:71341632-71341383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:108-367
               
               
               Cow position:chr11:83687608-83687335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:109-335
               
               
               Cow position:chr11:47004171-47004416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:109-350
               
               
               Cow position:chr11:26845760-26845511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:109-350
               
               
               Cow position:chr11:40573513-40573253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:110-350
               
               
               Cow position:chr11:30954820-30955083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:111-364
               
               
               Cow position:chr11:60143476-60143207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:113-342
               
               
               Cow position:chr11:30830791-30830539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:113-351
               
               
               Cow position:chr11:28993904-28993655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:114-328
               
               
               Cow position:chr11:71008961-71009189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:115-320
               
               
               Cow position:chr11:53511908-53512135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:117-366
               
               
               Cow position:chr11:33287121-33286859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:120-369
               
               
               Cow position:chr11:45742217-45742474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:123-343
               
               
               Cow position:chr11:41176112-41175874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:123-345
               
               
               Cow position:chr11:75874914-75874677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:123-350
               
               
               Cow position:chr11:32693634-32693402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 110

               
               
               Conread position:123-350
               
               
               Cow position:chr11:40479017-40478771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:123-350
               
               
               Cow position:chr11:48295870-48296113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:123-350
               
               
               Cow position:chr11:63917627-63917394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 12

               
               
               Conread position:123-350
               
               
               Cow position:chr11:83925883-83926125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:123-376
               
               
               Cow position:chr11:8545175-8544907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:127-352
               
               
               Cow position:chr11:6202288-6202528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:128-350
               
               
               Cow position:chr11:13075948-13075729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:128-350
               
               
               Cow position:chr11:51729131-51729369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:128-350
               
               
               Cow position:chr11:55494522-55494762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:130-350
               
               
               Cow position:chr11:63435362-63435603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:133-350
               
               
               Cow position:chr11:48306496-48306264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:133-352
               
               
               Cow position:chr11:32254371-32254133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 230

               
               
               Conread position:135-276
               
               
               Cow position:chr11:70824945-70825091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:136-291
               
               
               Cow position:chr11:51626813-51626978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:136-343
               
               
               Cow position:chr11:6633562-6633786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:139-350
               
               
               Cow position:chr11:49057256-49057474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:141-350
               
               
               Cow position:chr11:70756333-70756560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:145-337
               
               
               Cow position:chr11:70978868-70978664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:147-350
               
               
               Cow position:chr11:52690661-52690439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 217

               
               
               Conread position:147-368
               
               
               Cow position:chr11:70206184-70206420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:176-355
               
               
               Cow position:chr11:79019161-79018971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:179-347
               
               
               Cow position:chr11:9368729-9368905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:179-350
               
               
               Cow position:chr11:4653075-4652890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:179-350
               
               
               Cow position:chr11:42066761-42066947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:180-347
               
               
               Cow position:chr11:18785967-18785798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:181-350
               
               
               Cow position:chr11:7013839-7013663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 50

               
               
               Conread position:183-347
               
               
               Cow position:chr11:19586361-19586539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:183-350
               
               
               Cow position:chr11:41603783-41603604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 162

               
               
               Conread position:183-353
               
               
               Cow position:chr11:35803040-35803222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:184-328
               
               
               Cow position:chr11:46592376-46592526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:185-346
               
               
               Cow position:chr11:32398545-32398714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 120

               
               
               Conread position:185-350
               
               
               Cow position:chr11:35536496-35536669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:186-343
               
               
               Cow position:chr11:75965740-75965576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:186-345
               
               
               Cow position:chr11:6194317-6194475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:186-346
               
               
               Cow position:chr11:249575-249403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr11:14466579-14466404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr11:83033327-83033157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:188-347
               
               
               Cow position:chr11:69652874-69652702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:191-350
               
               
               Cow position:chr11:27565250-27565413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:191-350
               
               
               Cow position:chr11:84890806-84890635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:192-350
               
               
               Cow position:chr11:22747414-22747248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:193-350
               
               
               Cow position:chr11:41313740-41313574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:9-350
               
               
               Cow position:chr12:18103895-18103551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:49-276
               
               
               Cow position:chr12:25820696-25820452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 199

               
               
               Conread position:51-276
               
               
               Cow position:chr12:46635202-46634978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:53-361
               
               
               Cow position:chr12:46314949-46314630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:55-182
               
               
               Cow position:chr12:35218660-35218529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-225
               
               
               Cow position:chr12:12017621-12017806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:55-273
               
               
               Cow position:chr12:41214577-41214346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):45, 100

               
               
               Conread position:55-280
               
               
               Cow position:chr12:2242140-2241907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:55-314
               
               
               Cow position:chr12:43476100-43476373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 172

               
               
               Conread position:55-341
               
               
               Cow position:chr12:4008538-4008231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:55-346
               
               
               Cow position:chr12:19869216-19869519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:55-347
               
               
               Cow position:chr12:19502675-19502369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:55-347
               
               
               Cow position:chr12:33457893-33458206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:55-348
               
               
               Cow position:chr12:35310928-35310627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:55-350
               
               
               Cow position:chr12:5635703-5635391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-350
               
               
               Cow position:chr12:26869054-26868753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 136

               
               
               Conread position:55-350
               
               
               Cow position:chr12:29995717-29995402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):5, 101

               
               
               Conread position:55-350
               
               
               Cow position:chr12:41159341-41159649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:55-351
               
               
               Cow position:chr12:22881796-22882119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:55-352
               
               
               Cow position:chr12:42698478-42698182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-353
               
               
               Cow position:chr12:44905381-44905692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 171

               
               
               Conread position:55-366
               
               
               Cow position:chr12:25320668-25320994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:56-148
               
               
               Cow position:chr12:20283656-20283751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-165
               
               
               Cow position:chr12:22132232-22132120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-177
               
               
               Cow position:chr12:26777407-26777284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:56-182
               
               
               Cow position:chr12:19154865-19154740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:56-182
               
               
               Cow position:chr12:29162065-29161938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr12:7108934-7109067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr12:28011153-28011004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-203
               
               
               Cow position:chr12:22124758-22124905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-207
               
               
               Cow position:chr12:18937133-18937290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:56-210
               
               
               Cow position:chr12:31925396-31925558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-212
               
               
               Cow position:chr12:4134410-4134586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:56-213
               
               
               Cow position:chr12:20316761-20316602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:56-218
               
               
               Cow position:chr12:40158494-40158317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-220
               
               
               Cow position:chr12:40270340-40270169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:56-226
               
               
               Cow position:chr12:9465714-9465533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-245
               
               
               Cow position:chr12:17472474-17472277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-251
               
               
               Cow position:chr12:31841183-31841390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-263
               
               
               Cow position:chr12:37123259-37123457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-267
               
               
               Cow position:chr12:46143567-46143791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:56-270
               
               
               Cow position:chr12:32391591-32391820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-273
               
               
               Cow position:chr12:19039866-19039635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:56-276
               
               
               Cow position:chr12:4182950-4182713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-276
               
               
               Cow position:chr12:22047215-22047448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-276
               
               
               Cow position:chr12:25455860-25456097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-277
               
               
               Cow position:chr12:5707870-5708084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-280
               
               
               Cow position:chr12:8710577-8710803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-280
               
               
               Cow position:chr12:24032752-24032987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:56-281
               
               
               Cow position:chr12:39486175-39486407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-286
               
               
               Cow position:chr12:1284712-1284475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 162

               
               
               Conread position:56-286
               
               
               Cow position:chr12:17495446-17495221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 132

               
               
               Conread position:56-286
               
               
               Cow position:chr12:19865988-19866226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:56-286
               
               
               Cow position:chr12:27563635-27563390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:56-286
               
               
               Cow position:chr12:34385768-34385520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):26, 98

               
               
               Conread position:56-286
               
               
               Cow position:chr12:40910545-40910302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-286
               
               
               Cow position:chr12:42602494-42602256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-287
               
               
               Cow position:chr12:3055883-3056122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 121

               
               
               Conread position:56-287
               
               
               Cow position:chr12:9710458-9710219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):103, 36

               
               
               Conread position:56-288
               
               
               Cow position:chr12:1343357-1343120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:56-288
               
               
               Cow position:chr12:12178667-12178913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:56-288
               
               
               Cow position:chr12:24107792-24107555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 178

               
               
               Conread position:56-288
               
               
               Cow position:chr12:44014094-44013850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-288
               
               
               Cow position:chr12:44846139-44846375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:56-291
               
               
               Cow position:chr12:28572448-28572680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-291
               
               
               Cow position:chr12:29411743-29411497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-312
               
               
               Cow position:chr12:23154721-23154455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 208

               
               
               Conread position:56-314
               
               
               Cow position:chr12:18040845-18040583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-319
               
               
               Cow position:chr12:15938521-15938235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:56-326
               
               
               Cow position:chr12:15240978-15240700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-338
               
               
               Cow position:chr12:34673584-34673290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:56-339
               
               
               Cow position:chr12:34148605-34148310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 109

               
               
               Conread position:56-340
               
               
               Cow position:chr12:36954629-36954341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:56-342
               
               
               Cow position:chr12:30170413-30170723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:56-344
               
               
               Cow position:chr12:12304145-12304436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 43

               
               
               Conread position:56-344
               
               
               Cow position:chr12:33323753-33323440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-344
               
               
               Cow position:chr12:34007045-34007357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:56-345
               
               
               Cow position:chr12:37727893-37728201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:56-346
               
               
               Cow position:chr12:6410982-6410676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-346
               
               
               Cow position:chr12:32169282-32169598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-346
               
               
               Cow position:chr12:37733031-37732722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:56-347
               
               
               Cow position:chr12:8943474-8943165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-347
               
               
               Cow position:chr12:18943898-18943599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-347
               
               
               Cow position:chr12:47803901-47804215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-347
               
               
               Cow position:chr12:47928961-47929259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 207

               
               
               Conread position:56-349
               
               
               Cow position:chr12:18769328-18769011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:56-349
               
               
               Cow position:chr12:30064690-30064995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:56-350
               
               
               Cow position:chr12:2711238-2711560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr12:3510309-3510615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr12:5800781-5801104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 230

               
               
               Conread position:56-350
               
               
               Cow position:chr12:6241055-6241381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr12:6489231-6488931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr12:7977793-7978098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 61

               
               
               Conread position:56-350
               
               
               Cow position:chr12:9229736-9229438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr12:9914535-9914850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:56-350
               
               
               Cow position:chr12:10895802-10895492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:56-350
               
               
               Cow position:chr12:11835988-11836296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):130, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr12:15122082-15122388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:56-350
               
               
               Cow position:chr12:17031367-17031676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr12:18020599-18020919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr12:18123432-18123731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr12:18388536-18388229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr12:18421181-18420871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr12:18572387-18572686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:56-350
               
               
               Cow position:chr12:18577595-18577902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr12:19691492-19691172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):27, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr12:20479568-20479276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:56-350
               
               
               Cow position:chr12:20777185-20776863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr12:25561116-25561431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr12:30437996-30438298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:56-350
               
               
               Cow position:chr12:30605410-30605104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr12:30745459-30745778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr12:30919178-30919487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):107, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr12:31429815-31429509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr12:31532658-31532342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:56-350
               
               
               Cow position:chr12:32714788-32715106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 146

               
               
               Conread position:56-350
               
               
               Cow position:chr12:35368389-35368703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr12:35771286-35770960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr12:39465324-39465641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr12:43942226-43942543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr12:44596068-44595748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr12:44622105-44622410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:56-351
               
               
               Cow position:chr12:42879452-42879757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-352
               
               
               Cow position:chr12:29969322-29969643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):29, 173

               
               
               Conread position:56-352
               
               
               Cow position:chr12:31228320-31228635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:56-352
               
               
               Cow position:chr12:41473841-41474153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:56-353
               
               
               Cow position:chr12:18518417-18518738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-353
               
               
               Cow position:chr12:34473869-34473560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-353
               
               
               Cow position:chr12:40110135-40110436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-355
               
               
               Cow position:chr12:8869137-8868815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:56-355
               
               
               Cow position:chr12:45814519-45814196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 186

               
               
               Conread position:56-355
               
               
               Cow position:chr12:46333108-46333411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:56-363
               
               
               Cow position:chr12:9143139-9143462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-363
               
               
               Cow position:chr12:27563091-27562765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:56-364
               
               
               Cow position:chr12:3950605-3950268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-364
               
               
               Cow position:chr12:4341974-4341666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-364
               
               
               Cow position:chr12:5714374-5714704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-364
               
               
               Cow position:chr12:7000846-7000527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:56-364
               
               
               Cow position:chr12:36012863-36012552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 234

               
               
               Conread position:56-364
               
               
               Cow position:chr12:37770621-37770946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:56-364
               
               
               Cow position:chr12:42254404-42254744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):48, 198

               
               
               Conread position:56-364
               
               
               Cow position:chr12:42966746-42967072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-366
               
               
               Cow position:chr12:6210411-6210080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-367
               
               
               Cow position:chr12:19697161-19697478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:56-367
               
               
               Cow position:chr12:37993980-37993651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:56-368
               
               
               Cow position:chr12:48415767-48415434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:56-410
               
               
               Cow position:chr12:9482553-9482185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 170

               
               
               Conread position:57-260
               
               
               Cow position:chr12:6226900-6226690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:57-260
               
               
               Cow position:chr12:44766831-44767038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:57-276
               
               
               Cow position:chr12:28650699-28650935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:57-286
               
               
               Cow position:chr12:36501205-36500960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):42, 184

               
               
               Conread position:57-290
               
               
               Cow position:chr12:20326517-20326764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-314
               
               
               Cow position:chr12:26782628-26782896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 199

               
               
               Conread position:57-350
               
               
               Cow position:chr12:11109516-11109815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:57-350
               
               
               Cow position:chr12:30805605-30805920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:57-350
               
               
               Cow position:chr12:42283090-42282775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 182

               
               
               Conread position:57-350
               
               
               Cow position:chr12:44517988-44517676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:57-353
               
               
               Cow position:chr12:23797850-23798163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:57-353
               
               
               Cow position:chr12:28582745-28582445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):42, 49

               
               
               Conread position:57-366
               
               
               Cow position:chr12:31959641-31959956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:58-260
               
               
               Cow position:chr12:45431230-45431039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:58-271
               
               
               Cow position:chr12:17702485-17702253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):41, 116

               
               
               Conread position:58-286
               
               
               Cow position:chr12:21393453-21393693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:58-334
               
               
               Cow position:chr12:17716831-17717111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:58-350
               
               
               Cow position:chr12:28213266-28213571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:58-350
               
               
               Cow position:chr12:30662201-30661889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:58-353
               
               
               Cow position:chr12:17774553-17774858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):42, 56

               
               
               Conread position:58-364
               
               
               Cow position:chr12:5940091-5940418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):38, 157

               
               
               Conread position:59-350
               
               
               Cow position:chr12:26223237-26222928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):22, 99

               
               
               Conread position:59-350
               
               
               Cow position:chr12:27803301-27802988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:59-350
               
               
               Cow position:chr12:29484141-29483825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:62-346
               
               
               Cow position:chr12:30753474-30753777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 180

               
               
               Conread position:62-350
               
               
               Cow position:chr12:18766229-18765911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):37, 103

               
               
               Conread position:62-350
               
               
               Cow position:chr12:29780150-29779852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):37, 154

               
               
               Conread position:63-252
               
               
               Cow position:chr12:46673477-46673276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 150

               
               
               Conread position:63-274
               
               
               Cow position:chr12:19372353-19372131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:63-350
               
               
               Cow position:chr12:30590529-30590829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:64-285
               
               
               Cow position:chr12:11583155-11583376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:64-350
               
               
               Cow position:chr12:24211170-24211468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:64-352
               
               
               Cow position:chr12:23574524-23574827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:66-355
               
               
               Cow position:chr12:29770817-29770512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:67-288
               
               
               Cow position:chr12:42954137-42953910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):27, 156

               
               
               Conread position:67-350
               
               
               Cow position:chr12:34161174-34161475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:69-286
               
               
               Cow position:chr12:12031076-12030841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):13, 231

               
               
               Conread position:70-286
               
               
               Cow position:chr12:40028995-40028767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:70-293
               
               
               Cow position:chr12:43582538-43582770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:70-295
               
               
               Cow position:chr12:28471399-28471635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:70-346
               
               
               Cow position:chr12:31198526-31198825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 79

               
               
               Conread position:70-350
               
               
               Cow position:chr12:17881626-17881923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:72-288
               
               
               Cow position:chr12:30476239-30476471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):27, 168

               
               
               Conread position:73-347
               
               
               Cow position:chr12:1889817-1889519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:74-348
               
               
               Cow position:chr12:15162914-15163198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:75-286
               
               
               Cow position:chr12:4162606-4162376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 227

               
               
               Conread position:77-346
               
               
               Cow position:chr12:38454685-38454962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:80-330
               
               
               Cow position:chr12:3906238-3906515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:81-350
               
               
               Cow position:chr12:45820592-45820304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:81-364
               
               
               Cow position:chr12:24662886-24663191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:82-287
               
               
               Cow position:chr12:28748706-28748931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:82-350
               
               
               Cow position:chr12:27037677-27037388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:82-368
               
               
               Cow position:chr12:12579253-12578953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:83-346
               
               
               Cow position:chr12:25452669-25452389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:84-366
               
               
               Cow position:chr12:4596223-4596544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 171

               
               
               Conread position:85-263
               
               
               Cow position:chr12:44559361-44559553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 153

               
               
               Conread position:85-277
               
               
               Cow position:chr12:38512067-38511857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:85-366
               
               
               Cow position:chr12:18964154-18963849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:87-290
               
               
               Cow position:chr12:4714154-4714353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):103, 9

               
               
               Conread position:88-290
               
               
               Cow position:chr12:4116271-4116480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:89-286
               
               
               Cow position:chr12:31947902-31948102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:90-350
               
               
               Cow position:chr12:30210258-30210545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:91-347
               
               
               Cow position:chr12:21862003-21861749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:98-364
               
               
               Cow position:chr12:42162828-42163116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):15, 174

               
               
               Conread position:100-273
               
               
               Cow position:chr12:18021388-18021567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):81, 138

               
               
               Conread position:100-350
               
               
               Cow position:chr12:30194500-30194763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):85, 180

               
               
               Conread position:100-350
               
               
               Cow position:chr12:36544858-36544580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:100-367
               
               
               Cow position:chr12:33851150-33851435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:101-346
               
               
               Cow position:chr12:1030776-1031037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:103-350
               
               
               Cow position:chr12:2805250-2805012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:105-286
               
               
               Cow position:chr12:7960779-7960594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 174

               
               
               Conread position:107-343
               
               
               Cow position:chr12:23916643-23916897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:108-286
               
               
               Cow position:chr12:29921978-29921798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:108-366
               
               
               Cow position:chr12:33976002-33976277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:109-288
               
               
               Cow position:chr12:10491077-10491262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:109-350
               
               
               Cow position:chr12:4768726-4768987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 141

               
               
               Conread position:110-343
               
               
               Cow position:chr12:25280692-25280447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:115-348
               
               
               Cow position:chr12:19664722-19664471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:117-350
               
               
               Cow position:chr12:3623504-3623755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:123-333
               
               
               Cow position:chr12:23855652-23855881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):37, 116

               
               
               Conread position:124-323
               
               
               Cow position:chr12:18420288-18420504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 214

               
               
               Conread position:125-342
               
               
               Cow position:chr12:11587586-11587828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:126-350
               
               
               Cow position:chr12:7884850-7884619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):156, 25

               
               
               Conread position:128-342
               
               
               Cow position:chr12:15050798-15050571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 215

               
               
               Conread position:130-350
               
               
               Cow position:chr12:25110612-25110379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:144-346
               
               
               Cow position:chr12:41216046-41215827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:149-347
               
               
               Cow position:chr12:31517326-31517112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:151-350
               
               
               Cow position:chr12:3197120-3197330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:180-350
               
               
               Cow position:chr12:37008821-37008645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:186-348
               
               
               Cow position:chr12:19258168-19258336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):90, 122

               
               
               Conread position:186-350
               
               
               Cow position:chr12:26217937-26217762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:186-352
               
               
               Cow position:chr12:7110089-7110261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:186-367
               
               
               Cow position:chr12:10942174-10942365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 169

               
               
               Conread position:188-345
               
               
               Cow position:chr12:1333119-1333288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:189-350
               
               
               Cow position:chr12:42285860-42286031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 168

               
               
               Conread position:207-350
               
               
               Cow position:chr12:3615910-3616059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:47-339
               
               
               Cow position:chr13:15194996-15195309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:49-347
               
               
               Cow position:chr13:46458829-46458511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:49-350
               
               
               Cow position:chr13:17622491-17622174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:49-373
               
               
               Cow position:chr13:52749280-52749605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:51-352
               
               
               Cow position:chr13:15624818-15624511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):46, 151

               
               
               Conread position:52-263
               
               
               Cow position:chr13:43839341-43839561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:53-337
               
               
               Cow position:chr13:47356831-47356549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:54-330
               
               
               Cow position:chr13:11954910-11955212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:55-172
               
               
               Cow position:chr13:21988904-21989025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr13:33900717-33900841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:55-190
               
               
               Cow position:chr13:60599740-60599877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:55-225
               
               
               Cow position:chr13:48944863-48944689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:55-231
               
               
               Cow position:chr13:60690520-60690714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-252
               
               
               Cow position:chr13:21904864-21904656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:55-267
               
               
               Cow position:chr13:562936-563165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:55-276
               
               
               Cow position:chr13:20041759-20042001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-276
               
               
               Cow position:chr13:36352768-36352988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:55-278
               
               
               Cow position:chr13:5091459-5091702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 222

               
               
               Conread position:55-287
               
               
               Cow position:chr13:20605917-20606159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-288
               
               
               Cow position:chr13:1780035-1779786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 201

               
               
               Conread position:55-288
               
               
               Cow position:chr13:8838792-8839033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-294
               
               
               Cow position:chr13:22115906-22115644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:55-311
               
               
               Cow position:chr13:37795636-37795383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):133, 62

               
               
               Conread position:55-336
               
               
               Cow position:chr13:4464209-4463912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:55-343
               
               
               Cow position:chr13:2192910-2192623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:55-344
               
               
               Cow position:chr13:9643680-9643996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):44, 194

               
               
               Conread position:55-350
               
               
               Cow position:chr13:4664660-4664972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:55-350
               
               
               Cow position:chr13:6060805-6061123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-350
               
               
               Cow position:chr13:15041270-15041587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:55-350
               
               
               Cow position:chr13:15192692-15193001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:55-350
               
               
               Cow position:chr13:18835388-18835089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:55-350
               
               
               Cow position:chr13:19882833-19883151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:55-350
               
               
               Cow position:chr13:28683561-28683247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:55-350
               
               
               Cow position:chr13:43139023-43139328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:55-350
               
               
               Cow position:chr13:51821690-51821988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:55-351
               
               
               Cow position:chr13:60974280-60973963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:55-353
               
               
               Cow position:chr13:15167025-15166700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:55-353
               
               
               Cow position:chr13:48598106-48597792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:55-355
               
               
               Cow position:chr13:11808747-11808457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):125, 41

               
               
               Conread position:55-364
               
               
               Cow position:chr13:18166932-18166602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:55-364
               
               
               Cow position:chr13:24369786-24369451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-364
               
               
               Cow position:chr13:43184671-43185010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:55-366
               
               
               Cow position:chr13:2414228-2413899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:55-366
               
               
               Cow position:chr13:25817715-25817397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):116, 44

               
               
               Conread position:56-182
               
               
               Cow position:chr13:11147507-11147374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr13:15740270-15740135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr13:27027567-27027703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr13:33875863-33875738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:56-184
               
               
               Cow position:chr13:27985228-27985359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:56-197
               
               
               Cow position:chr13:43629575-43629710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-203
               
               
               Cow position:chr13:21210063-21209908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:56-205
               
               
               Cow position:chr13:19555953-19555797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-214
               
               
               Cow position:chr13:34508077-34507906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-216
               
               
               Cow position:chr13:21708382-21708213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 139

               
               
               Conread position:56-246
               
               
               Cow position:chr13:38012562-38012352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 169

               
               
               Conread position:56-260
               
               
               Cow position:chr13:54237547-54237338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-267
               
               
               Cow position:chr13:34299440-34299644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:56-268
               
               
               Cow position:chr13:20530940-20531172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-269
               
               
               Cow position:chr13:5278988-5279217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:56-269
               
               
               Cow position:chr13:19261999-19261802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):174, 43

               
               
               Conread position:56-274
               
               
               Cow position:chr13:22775110-22775327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-276
               
               
               Cow position:chr13:12574835-12574609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 181

               
               
               Conread position:56-276
               
               
               Cow position:chr13:25261607-25261843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr13:54093941-54093714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-277
               
               
               Cow position:chr13:13266003-13265774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:56-279
               
               
               Cow position:chr13:2463028-2463269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr13:9107778-9107553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-280
               
               
               Cow position:chr13:12682340-12682581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-280
               
               
               Cow position:chr13:18215627-18215409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:56-280
               
               
               Cow position:chr13:30693902-30693679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:56-285
               
               
               Cow position:chr13:34052400-34052629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 123

               
               
               Conread position:56-286
               
               
               Cow position:chr13:6835609-6835834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:56-286
               
               
               Cow position:chr13:16024790-16024549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:56-286
               
               
               Cow position:chr13:19033747-19033518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-286
               
               
               Cow position:chr13:52879613-52879372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-287
               
               
               Cow position:chr13:17855575-17855330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:56-287
               
               
               Cow position:chr13:24376691-24376451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:56-287
               
               
               Cow position:chr13:34035569-34035324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 176

               
               
               Conread position:56-287
               
               
               Cow position:chr13:47313108-47312875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:56-287
               
               
               Cow position:chr13:52284110-52283870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-288
               
               
               Cow position:chr13:26383030-26383278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-290
               
               
               Cow position:chr13:5752222-5752474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:56-290
               
               
               Cow position:chr13:19178477-19178227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-291
               
               
               Cow position:chr13:20174940-20174702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:56-291
               
               
               Cow position:chr13:30026313-30026063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-291
               
               
               Cow position:chr13:55295424-55295668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:56-295
               
               
               Cow position:chr13:37516935-37517191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-312
               
               
               Cow position:chr13:21039397-21039675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr13:31808713-31808443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:56-317
               
               
               Cow position:chr13:42114222-42113938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 188

               
               
               Conread position:56-320
               
               
               Cow position:chr13:20820639-20820914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-320
               
               
               Cow position:chr13:61166257-61166535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:56-323
               
               
               Cow position:chr13:54702392-54702098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-326
               
               
               Cow position:chr13:47502521-47502805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 214

               
               
               Conread position:56-327
               
               
               Cow position:chr13:17613547-17613248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-332
               
               
               Cow position:chr13:1155507-1155800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-334
               
               
               Cow position:chr13:1042755-1043068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:56-336
               
               
               Cow position:chr13:18244057-18243761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:56-337
               
               
               Cow position:chr13:8524421-8524720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:56-337
               
               
               Cow position:chr13:60429877-60430180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-342
               
               
               Cow position:chr13:20649782-20650094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-342
               
               
               Cow position:chr13:25531587-25531897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-343
               
               
               Cow position:chr13:8201285-8201591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-343
               
               
               Cow position:chr13:52894345-52894039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:56-344
               
               
               Cow position:chr13:23270012-23270314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 162

               
               
               Conread position:56-344
               
               
               Cow position:chr13:26480013-26480313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:56-344
               
               
               Cow position:chr13:46284419-46284716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:56-344
               
               
               Cow position:chr13:56686628-56686325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:56-345
               
               
               Cow position:chr13:61990133-61990434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-346
               
               
               Cow position:chr13:6079218-6079523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-346
               
               
               Cow position:chr13:6153578-6153895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-346
               
               
               Cow position:chr13:9593708-9593395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:56-346
               
               
               Cow position:chr13:18852277-18851972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-346
               
               
               Cow position:chr13:32017321-32017622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:56-346
               
               
               Cow position:chr13:42200820-42200508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr13:547689-547383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 169

               
               
               Conread position:56-347
               
               
               Cow position:chr13:8245131-8245443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:56-347
               
               
               Cow position:chr13:19393488-19393180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-347
               
               
               Cow position:chr13:20839768-20839454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-347
               
               
               Cow position:chr13:25434928-25435235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-347
               
               
               Cow position:chr13:31814068-31813764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-347
               
               
               Cow position:chr13:33352166-33352465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-347
               
               
               Cow position:chr13:51528245-51528550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr13:54095007-54094698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:56-349
               
               
               Cow position:chr13:17347008-17346697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 166

               
               
               Conread position:56-349
               
               
               Cow position:chr13:35718933-35719250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr13:152152-151848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:56-350
               
               
               Cow position:chr13:311631-311323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr13:889978-890287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr13:5263085-5263395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:56-350
               
               
               Cow position:chr13:6616547-6616873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:56-350
               
               
               Cow position:chr13:6974361-6974047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr13:8609346-8609662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr13:9142485-9142166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):125, 54

               
               
               Conread position:56-350
               
               
               Cow position:chr13:10845794-10845489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr13:10928789-10929103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:56-350
               
               
               Cow position:chr13:11061188-11060872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):23, 170

               
               
               Conread position:56-350
               
               
               Cow position:chr13:12990048-12989735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr13:13501418-13501732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr13:13765969-13765675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:56-350
               
               
               Cow position:chr13:14544323-14544021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr13:15162464-15162746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:56-350
               
               
               Cow position:chr13:15257177-15257482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:56-350
               
               
               Cow position:chr13:15288725-15289036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr13:15884812-15885137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:56-350
               
               
               Cow position:chr13:17021519-17021840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr13:17745440-17745133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr13:17977530-17977239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr13:20378136-20378434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr13:20683921-20684243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:56-350
               
               
               Cow position:chr13:20706001-20706320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr13:20784789-20784475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr13:21155288-21155601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr13:21241891-21242199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr13:21287889-21288200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:56-350
               
               
               Cow position:chr13:23166895-23167215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 314

               
               
               Conread position:56-350
               
               
               Cow position:chr13:23479230-23478915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:56-350
               
               
               Cow position:chr13:24754085-24753772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 179

               
               
               Conread position:56-350
               
               
               Cow position:chr13:25547392-25547696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr13:25926993-25926676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-350
               
               
               Cow position:chr13:27525060-27525375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr13:33054194-33054487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-350
               
               
               Cow position:chr13:34281881-34281564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr13:35659954-35659645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr13:37592737-37593062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr13:37818556-37818866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):127, 25

               
               
               Conread position:56-350
               
               
               Cow position:chr13:37981551-37981858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr13:38283783-38284094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr13:38329831-38329501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr13:42229529-42229197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr13:43480262-43479944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-350
               
               
               Cow position:chr13:43594914-43595218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):45, 199

               
               
               Conread position:56-350
               
               
               Cow position:chr13:44202190-44201894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr13:45073734-45074029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr13:45353247-45352917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 325

               
               
               Conread position:56-350
               
               
               Cow position:chr13:47964000-47964296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-350
               
               
               Cow position:chr13:56148742-56148406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 208

               
               
               Conread position:56-350
               
               
               Cow position:chr13:56154960-56155266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr13:56160225-56160561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 208

               
               
               Conread position:56-350
               
               
               Cow position:chr13:59170858-59170539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr13:60508915-60509234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 313

               
               
               Conread position:56-351
               
               
               Cow position:chr13:15349069-15349362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):125, 55

               
               
               Conread position:56-351
               
               
               Cow position:chr13:19022479-19022154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:56-351
               
               
               Cow position:chr13:20563198-20562876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-351
               
               
               Cow position:chr13:34263172-34263486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-351
               
               
               Cow position:chr13:34728636-34728953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 291

               
               
               Conread position:56-351
               
               
               Cow position:chr13:38277936-38278264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 202

               
               
               Conread position:56-351
               
               
               Cow position:chr13:62247332-62247020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):44, 240

               
               
               Conread position:56-352
               
               
               Cow position:chr13:11096373-11096065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-352
               
               
               Cow position:chr13:11260455-11260158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):125, 38

               
               
               Conread position:56-352
               
               
               Cow position:chr13:54344977-54344664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-353
               
               
               Cow position:chr13:14927440-14927144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-353
               
               
               Cow position:chr13:19223850-19223538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-353
               
               
               Cow position:chr13:45604217-45604533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 306

               
               
               Conread position:56-353
               
               
               Cow position:chr13:52227899-52228217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 182

               
               
               Conread position:56-353
               
               
               Cow position:chr13:60966965-60966651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-355
               
               
               Cow position:chr13:17800273-17799960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-355
               
               
               Cow position:chr13:46525241-46525546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):57, 102

               
               
               Conread position:56-355
               
               
               Cow position:chr13:57493982-57494309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:56-356
               
               
               Cow position:chr13:12670244-12670572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-356
               
               
               Cow position:chr13:13465589-13465887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:56-359
               
               
               Cow position:chr13:47007535-47007842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-361
               
               
               Cow position:chr13:37484069-37484406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:247
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-364
               
               
               Cow position:chr13:3315473-3315803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:56-364
               
               
               Cow position:chr13:15281735-15282065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):40, 195

               
               
               Conread position:56-364
               
               
               Cow position:chr13:43762366-43762038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-366
               
               
               Cow position:chr13:13320977-13320667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:56-366
               
               
               Cow position:chr13:36771224-36771550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-367
               
               
               Cow position:chr13:18491795-18491462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-367
               
               
               Cow position:chr13:37069550-37069211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-368
               
               
               Cow position:chr13:15869320-15868979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:56-396
               
               
               Cow position:chr13:12546704-12547067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:57-220
               
               
               Cow position:chr13:44323102-44322928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:57-251
               
               
               Cow position:chr13:2339630-2339430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:57-278
               
               
               Cow position:chr13:61170515-61170751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 190

               
               
               Conread position:57-280
               
               
               Cow position:chr13:33517724-33517960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-285
               
               
               Cow position:chr13:1011532-1011291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:57-286
               
               
               Cow position:chr13:4038080-4037853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:57-293
               
               
               Cow position:chr13:59687679-59687926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):42, 172

               
               
               Conread position:57-346
               
               
               Cow position:chr13:48037820-48037512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:57-347
               
               
               Cow position:chr13:34995126-34995441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:57-347
               
               
               Cow position:chr13:45023008-45023321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-347
               
               
               Cow position:chr13:46181989-46181680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:57-350
               
               
               Cow position:chr13:9246914-9246617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:57-350
               
               
               Cow position:chr13:12875785-12876086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:57-350
               
               
               Cow position:chr13:13176849-13176535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):69, 78

               
               
               Conread position:57-350
               
               
               Cow position:chr13:16015007-16014696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):101, 42

               
               
               Conread position:57-350
               
               
               Cow position:chr13:20666186-20666501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:57-350
               
               
               Cow position:chr13:21276055-21275744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:57-350
               
               
               Cow position:chr13:24230413-24230099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 181

               
               
               Conread position:57-350
               
               
               Cow position:chr13:26261594-26261902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 215

               
               
               Conread position:57-350
               
               
               Cow position:chr13:52285016-52284701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 202

               
               
               Conread position:57-351
               
               
               Cow position:chr13:38872772-38873060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):41, 61

               
               
               Conread position:57-367
               
               
               Cow position:chr13:17970834-17971160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:57-367
               
               
               Cow position:chr13:46112167-46111837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):42, 188

               
               
               Conread position:58-263
               
               
               Cow position:chr13:9884967-9884749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:58-269
               
               
               Cow position:chr13:51108690-51108467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:58-271
               
               
               Cow position:chr13:52199288-52199060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:58-278
               
               
               Cow position:chr13:60329949-60329725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:58-280
               
               
               Cow position:chr13:61976764-61976995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:58-312
               
               
               Cow position:chr13:17815970-17815709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:58-326
               
               
               Cow position:chr13:34941457-34941741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:58-333
               
               
               Cow position:chr13:48251793-48252058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:58-341
               
               
               Cow position:chr13:23512558-23512264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:58-346
               
               
               Cow position:chr13:12448789-12449098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 193

               
               
               Conread position:58-346
               
               
               Cow position:chr13:21235486-21235782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:58-350
               
               
               Cow position:chr13:7663230-7663537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:58-350
               
               
               Cow position:chr13:11460824-11460518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-350
               
               
               Cow position:chr13:34261431-34261116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:58-351
               
               
               Cow position:chr13:7076455-7076142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:58-353
               
               
               Cow position:chr13:26369725-26369407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):41, 270

               
               
               Conread position:58-366
               
               
               Cow position:chr13:23856414-23856081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:59-344
               
               
               Cow position:chr13:57475218-57475515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):40, 236

               
               
               Conread position:59-350
               
               
               Cow position:chr13:12207241-12206933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:60-184
               
               
               Cow position:chr13:52585823-52585952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:60-263
               
               
               Cow position:chr13:43812281-43812068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:60-344
               
               
               Cow position:chr13:53566796-53566492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:60-350
               
               
               Cow position:chr13:8652240-8652556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:60-350
               
               
               Cow position:chr13:20879637-20879938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:60-350
               
               
               Cow position:chr13:24715439-24715126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:60-350
               
               
               Cow position:chr13:51940928-51940619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:62-286
               
               
               Cow position:chr13:26847629-26847856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:62-350
               
               
               Cow position:chr13:17439571-17439883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:64-286
               
               
               Cow position:chr13:41253811-41253581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:65-179
               
               
               Cow position:chr13:5079033-5079149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:66-346
               
               
               Cow position:chr13:15991031-15991341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:66-350
               
               
               Cow position:chr13:21283515-21283818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:69-279
               
               
               Cow position:chr13:62474611-62474833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:70-182
               
               
               Cow position:chr13:22025522-22025637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:70-286
               
               
               Cow position:chr13:55583386-55583154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 180

               
               
               Conread position:70-337
               
               
               Cow position:chr13:2404930-2404652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:71-347
               
               
               Cow position:chr13:14771647-14771341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):28, 303

               
               
               Conread position:74-350
               
               
               Cow position:chr13:11644116-11643825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):52, 118

               
               
               Conread position:74-350
               
               
               Cow position:chr13:49503345-49503647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:75-367
               
               
               Cow position:chr13:19188486-19188170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:75-367
               
               
               Cow position:chr13:52055414-52055726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 142

               
               
               Conread position:76-350
               
               
               Cow position:chr13:5758164-5758457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:77-337
               
               
               Cow position:chr13:966257-965998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:81-350
               
               
               Cow position:chr13:49022694-49022983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:81-352
               
               
               Cow position:chr13:24586222-24585930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:82-295
               
               
               Cow position:chr13:46636959-46637174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:83-302
               
               
               Cow position:chr13:7790189-7789950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 72

               
               
               Conread position:87-286
               
               
               Cow position:chr13:4420517-4420302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 212

               
               
               Conread position:87-289
               
               
               Cow position:chr13:9800669-9800466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:88-344
               
               
               Cow position:chr13:46430132-46430412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 274

               
               
               Conread position:88-350
               
               
               Cow position:chr13:29831265-29831551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:98-276
               
               
               Cow position:chr13:22030246-22030065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:98-350
               
               
               Cow position:chr13:9900307-9900045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:98-350
               
               
               Cow position:chr13:15903175-15902909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):13, 6

               
               
               Conread position:100-340
               
               
               Cow position:chr13:25604470-25604718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 103

               
               
               Conread position:100-350
               
               
               Cow position:chr13:17158719-17158993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:100-350
               
               
               Cow position:chr13:20231048-20231304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:100-350
               
               
               Cow position:chr13:49824179-49823913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:100-350
               
               
               Cow position:chr13:54583033-54582759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:100-351
               
               
               Cow position:chr13:15110476-15110198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:100-353
               
               
               Cow position:chr13:45726048-45725774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:100-355
               
               
               Cow position:chr13:10988919-10989189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 141

               
               
               Conread position:101-290
               
               
               Cow position:chr13:41154877-41155082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:103-327
               
               
               Cow position:chr13:52929862-52929619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 145

               
               
               Conread position:104-286
               
               
               Cow position:chr13:37979024-37979203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:105-347
               
               
               Cow position:chr13:9265681-9265939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:105-350
               
               
               Cow position:chr13:37640737-37640474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:107-350
               
               
               Cow position:chr13:39368104-39367844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:107-350
               
               
               Cow position:chr13:43829384-43829129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:109-314
               
               
               Cow position:chr13:1363841-1363616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:109-347
               
               
               Cow position:chr13:18696989-18696729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:109-347
               
               
               Cow position:chr13:26698350-26698610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:109-350
               
               
               Cow position:chr13:17568952-17569216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:109-355
               
               
               Cow position:chr13:54388874-54389141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:110-350
               
               
               Cow position:chr13:8374626-8374887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:111-288
               
               
               Cow position:chr13:14870674-14870489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:111-345
               
               
               Cow position:chr13:18058104-18058360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:113-350
               
               
               Cow position:chr13:20360413-20360164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:117-350
               
               
               Cow position:chr13:18929667-18929415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 246

               
               
               Conread position:122-350
               
               
               Cow position:chr13:6389511-6389281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:123-286
               
               
               Cow position:chr13:2803598-2803432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 5

               
               
               Conread position:124-346
               
               
               Cow position:chr13:11591875-11591640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:125-350
               
               
               Cow position:chr13:51115900-51116139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:126-350
               
               
               Cow position:chr13:18995256-18995012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 232

               
               
               Conread position:130-335
               
               
               Cow position:chr13:50713325-50713110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:134-350
               
               
               Cow position:chr13:19279209-19278980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:139-350
               
               
               Cow position:chr13:8355313-8355090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:139-350
               
               
               Cow position:chr13:56678129-56677900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:150-347
               
               
               Cow position:chr13:7265021-7265232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:151-326
               
               
               Cow position:chr13:620158-620340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:179-350
               
               
               Cow position:chr13:62008177-62007993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):48, 181

               
               
               Conread position:179-367
               
               
               Cow position:chr13:17838014-17837817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:182-366
               
               
               Cow position:chr13:12925836-12925647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:186-336
               
               
               Cow position:chr13:8369215-8369065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:186-346
               
               
               Cow position:chr13:5006050-5005890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:186-350
               
               
               Cow position:chr13:17822893-17823064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:186-351
               
               
               Cow position:chr13:17563794-17563623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:186-353
               
               
               Cow position:chr13:25428170-25428341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:187-350
               
               
               Cow position:chr13:20400935-20401100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:189-347
               
               
               Cow position:chr13:17350408-17350243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 120

               
               
               Conread position:189-350
               
               
               Cow position:chr13:3211606-3211434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:192-350
               
               
               Cow position:chr13:16020904-16020736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:200-345
               
               
               Cow position:chr13:60393827-60393674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:233-350
               
               
               Cow position:chr13:15083671-15083549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:41-245
               
               
               Cow position:chr14:22952727-22952936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:49-357
               
               
               Cow position:chr14:39302098-39302422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:51-350
               
               
               Cow position:chr14:1645925-1646242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:53-288
               
               
               Cow position:chr14:39434000-39434245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):72, 92

               
               
               Conread position:55-155
               
               
               Cow position:chr14:19513117-19513221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-181
               
               
               Cow position:chr14:29300105-29300236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:55-183
               
               
               Cow position:chr14:16310645-16310777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-269
               
               
               Cow position:chr14:11748661-11748877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):129, 176

               
               
               Conread position:55-276
               
               
               Cow position:chr14:19222141-19221904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:55-280
               
               
               Cow position:chr14:47609327-47609560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 161

               
               
               Conread position:55-286
               
               
               Cow position:chr14:33326134-33326378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:55-293
               
               
               Cow position:chr14:38296016-38296273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:55-314
               
               
               Cow position:chr14:6190678-6190951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):39, 187

               
               
               Conread position:55-334
               
               
               Cow position:chr14:39821427-39821124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 210

               
               
               Conread position:55-346
               
               
               Cow position:chr14:5836160-5835858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:55-346
               
               
               Cow position:chr14:13427078-13426796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):212, 8

               
               
               Conread position:55-347
               
               
               Cow position:chr14:8786289-8786602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 190

               
               
               Conread position:55-347
               
               
               Cow position:chr14:25779354-25779047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:55-347
               
               
               Cow position:chr14:40721665-40721977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:55-349
               
               
               Cow position:chr14:25385631-25385943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 205

               
               
               Conread position:55-350
               
               
               Cow position:chr14:6175843-6175539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 166

               
               
               Conread position:55-350
               
               
               Cow position:chr14:18345470-18345786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr14:28114923-28115244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr14:30662247-30661940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 182

               
               
               Conread position:55-350
               
               
               Cow position:chr14:35544255-35544562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr14:44848124-44848427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):127, 50

               
               
               Conread position:55-351
               
               
               Cow position:chr14:20932878-20932558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:55-353
               
               
               Cow position:chr14:16834590-16834261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-355
               
               
               Cow position:chr14:10697266-10697564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:56-166
               
               
               Cow position:chr14:37890109-37889998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr14:21534781-21534906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:56-182
               
               
               Cow position:chr14:35509715-35509838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr14:25695639-25695501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-190
               
               
               Cow position:chr14:39518955-39518815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr14:47036541-47036679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-193
               
               
               Cow position:chr14:19996577-19996434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-204
               
               
               Cow position:chr14:11981912-11981753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-207
               
               
               Cow position:chr14:12613843-12613987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:56-212
               
               
               Cow position:chr14:41190621-41190787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-214
               
               
               Cow position:chr14:47507363-47507197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 147

               
               
               Conread position:56-217
               
               
               Cow position:chr14:7317095-7316911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-217
               
               
               Cow position:chr14:34082896-34083062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-218
               
               
               Cow position:chr14:19975476-19975311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 59

               
               
               Conread position:56-232
               
               
               Cow position:chr14:5501893-5502094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-260
               
               
               Cow position:chr14:24797318-24797536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-270
               
               
               Cow position:chr14:19624349-19624118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-272
               
               
               Cow position:chr14:6419053-6419272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-272
               
               
               Cow position:chr14:12249937-12250164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 181

               
               
               Conread position:56-273
               
               
               Cow position:chr14:14280676-14280440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:56-273
               
               
               Cow position:chr14:39422329-39422564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:56-273
               
               
               Cow position:chr14:46489996-46490230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-276
               
               
               Cow position:chr14:7270757-7270977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:56-276
               
               
               Cow position:chr14:24786192-24785971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-276
               
               
               Cow position:chr14:27312683-27312449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:56-276
               
               
               Cow position:chr14:34355443-34355668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:56-279
               
               
               Cow position:chr14:8754585-8754342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:56-279
               
               
               Cow position:chr14:13006765-13006527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):90, 223

               
               
               Conread position:56-279
               
               
               Cow position:chr14:33209100-33209328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr14:33828408-33828184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:56-280
               
               
               Cow position:chr14:41756518-41756286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:56-286
               
               
               Cow position:chr14:445660-445423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):141, 15

               
               
               Conread position:56-286
               
               
               Cow position:chr14:17238621-17238369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 249

               
               
               Conread position:56-286
               
               
               Cow position:chr14:25231390-25231633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-286
               
               
               Cow position:chr14:28304527-28304766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:56-286
               
               
               Cow position:chr14:33538667-33538919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-287
               
               
               Cow position:chr14:6599695-6599942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-287
               
               
               Cow position:chr14:24683871-24684117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 49

               
               
               Conread position:56-287
               
               
               Cow position:chr14:32574408-32574177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-287
               
               
               Cow position:chr14:36437227-36437471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-288
               
               
               Cow position:chr14:15033014-15032768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-288
               
               
               Cow position:chr14:38379280-38379035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:56-291
               
               
               Cow position:chr14:11819865-11820108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-291
               
               
               Cow position:chr14:41716366-41716128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:56-293
               
               
               Cow position:chr14:7482314-7482067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):57, 108

               
               
               Conread position:56-304
               
               
               Cow position:chr14:21284889-21284617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr14:11043231-11043512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):38, 190

               
               
               Conread position:56-330
               
               
               Cow position:chr14:33773792-33774085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-332
               
               
               Cow position:chr14:15913292-15913579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 208

               
               
               Conread position:56-332
               
               
               Cow position:chr14:28795935-28795632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-335
               
               
               Cow position:chr14:37884152-37884453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:56-338
               
               
               Cow position:chr14:24796164-24796480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:56-341
               
               
               Cow position:chr14:28378623-28378310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-342
               
               
               Cow position:chr14:22967011-22966706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-343
               
               
               Cow position:chr14:18941045-18941336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:56-344
               
               
               Cow position:chr14:25378232-25378546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:56-344
               
               
               Cow position:chr14:25403685-25403987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-344
               
               
               Cow position:chr14:37333950-37333648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-344
               
               
               Cow position:chr14:37678739-37679054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 309

               
               
               Conread position:56-344
               
               
               Cow position:chr14:41128152-41127851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-345
               
               
               Cow position:chr14:7960024-7959734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-345
               
               
               Cow position:chr14:36709382-36709071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-346
               
               
               Cow position:chr14:9837633-9837948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:56-346
               
               
               Cow position:chr14:33714429-33714727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-346
               
               
               Cow position:chr14:40433180-40432872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-347
               
               
               Cow position:chr14:7647780-7648074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 115

               
               
               Conread position:56-347
               
               
               Cow position:chr14:34199583-34199898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-347
               
               
               Cow position:chr14:38355441-38355133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:56-347
               
               
               Cow position:chr14:49021644-49021953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-348
               
               
               Cow position:chr14:12856855-12856544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:56-349
               
               
               Cow position:chr14:31399834-31399540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr14:6735607-6735921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr14:7695509-7695208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-350
               
               
               Cow position:chr14:8102037-8101735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:56-350
               
               
               Cow position:chr14:8848507-8848210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr14:9901429-9901126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr14:10078519-10078210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:56-350
               
               
               Cow position:chr14:12036583-12036883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr14:13810196-13809882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr14:14187592-14187274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:56-350
               
               
               Cow position:chr14:14317124-14316829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:56-350
               
               
               Cow position:chr14:14466220-14466514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr14:17841028-17841349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:56-350
               
               
               Cow position:chr14:18904349-18904663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-350
               
               
               Cow position:chr14:19129770-19129449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 316

               
               
               Conread position:56-350
               
               
               Cow position:chr14:19372602-19372281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr14:19593881-19594194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 310

               
               
               Conread position:56-350
               
               
               Cow position:chr14:19618507-19618808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr14:19863181-19863492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):105, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr14:20600640-20600327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:56-350
               
               
               Cow position:chr14:20640365-20640687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):42, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr14:20666762-20667066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr14:20712423-20712744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):27, 281

               
               
               Conread position:56-350
               
               
               Cow position:chr14:21018371-21018057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 242

               
               
               Conread position:56-350
               
               
               Cow position:chr14:21964379-21964079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-350
               
               
               Cow position:chr14:24922365-24922043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 316

               
               
               Conread position:56-350
               
               
               Cow position:chr14:24981713-24981402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr14:26097428-26097751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr14:29632624-29632939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr14:31130130-31130432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr14:32452515-32452192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):43, 198

               
               
               Conread position:56-350
               
               
               Cow position:chr14:33247179-33247487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 49

               
               
               Conread position:56-350
               
               
               Cow position:chr14:35018497-35018811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr14:35381847-35381535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr14:35420498-35420821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 317

               
               
               Conread position:56-350
               
               
               Cow position:chr14:35498242-35498547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:56-350
               
               
               Cow position:chr14:36554893-36555204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):47, 190

               
               
               Conread position:56-350
               
               
               Cow position:chr14:37883660-37883973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 310

               
               
               Conread position:56-350
               
               
               Cow position:chr14:38143854-38144164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr14:39618117-39618434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-350
               
               
               Cow position:chr14:39769971-39770285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr14:39779012-39778694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-350
               
               
               Cow position:chr14:40034229-40033937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr14:40230378-40230692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-350
               
               
               Cow position:chr14:41211115-41210796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr14:42154702-42155029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr14:42330613-42330295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr14:45068828-45069122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-350
               
               
               Cow position:chr14:45605349-45605040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr14:45677482-45677172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr14:47672624-47672939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-350
               
               
               Cow position:chr14:48412618-48412940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr14:50363064-50362737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):40, 205

               
               
               Conread position:56-351
               
               
               Cow position:chr14:37156127-37155818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-351
               
               
               Cow position:chr14:46965818-46965535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:56-352
               
               
               Cow position:chr14:17755817-17755508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:56-352
               
               
               Cow position:chr14:36167192-36166882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):125, 94

               
               
               Conread position:56-353
               
               
               Cow position:chr14:40269587-40269901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 183

               
               
               Conread position:56-353
               
               
               Cow position:chr14:43249844-43249528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:56-364
               
               
               Cow position:chr14:5630420-5630090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:56-364
               
               
               Cow position:chr14:8540957-8541285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-364
               
               
               Cow position:chr14:39926450-39926136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 219

               
               
               Conread position:56-366
               
               
               Cow position:chr14:4991250-4990929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 30

               
               
               Conread position:56-366
               
               
               Cow position:chr14:33751770-33751464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-368
               
               
               Cow position:chr14:11641316-11641618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:57-187
               
               
               Cow position:chr14:36775858-36775729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:57-219
               
               
               Cow position:chr14:12484045-12484218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:57-219
               
               
               Cow position:chr14:21230293-21230131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:57-254
               
               
               Cow position:chr14:10912715-10912918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:57-276
               
               
               Cow position:chr14:24581182-24580954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-276
               
               
               Cow position:chr14:24992070-24991848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:57-288
               
               
               Cow position:chr14:24894018-24893785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 136

               
               
               Conread position:57-290
               
               
               Cow position:chr14:9020284-9020038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:57-291
               
               
               Cow position:chr14:23464557-23464806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:57-346
               
               
               Cow position:chr14:20384723-20385039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):14, 194

               
               
               Conread position:57-346
               
               
               Cow position:chr14:23712944-23712627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:57-350
               
               
               Cow position:chr14:15054728-15055049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr14:18309052-18309365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:57-350
               
               
               Cow position:chr14:20016449-20016764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 42

               
               
               Conread position:57-350
               
               
               Cow position:chr14:24387709-24387383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr14:27848458-27848127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:57-350
               
               
               Cow position:chr14:34984122-34983809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:57-350
               
               
               Cow position:chr14:38921196-38920894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:57-350
               
               
               Cow position:chr14:40165679-40165367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:57-350
               
               
               Cow position:chr14:48689787-48689473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:58-263
               
               
               Cow position:chr14:22381298-22381514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 182

               
               
               Conread position:58-269
               
               
               Cow position:chr14:27865875-27866088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:58-288
               
               
               Cow position:chr14:8964800-8964563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:58-335
               
               
               Cow position:chr14:28987949-28987661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:58-337
               
               
               Cow position:chr14:34221311-34221016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):41, 238

               
               
               Conread position:58-337
               
               
               Cow position:chr14:50589133-50589448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:58-338
               
               
               Cow position:chr14:33338223-33338522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:58-350
               
               
               Cow position:chr14:10858688-10858375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 191

               
               
               Conread position:58-350
               
               
               Cow position:chr14:16237249-16237569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 314

               
               
               Conread position:58-350
               
               
               Cow position:chr14:22583396-22583095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:58-350
               
               
               Cow position:chr14:24237078-24236766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:58-350
               
               
               Cow position:chr14:33309252-33309561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:60-280
               
               
               Cow position:chr14:37103465-37103232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:60-341
               
               
               Cow position:chr14:42785194-42784914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:60-351
               
               
               Cow position:chr14:38337889-38338192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 177

               
               
               Conread position:61-186
               
               
               Cow position:chr14:35650952-35651080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:63-301
               
               
               Cow position:chr14:29030080-29029831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:63-350
               
               
               Cow position:chr14:10721483-10721764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:64-280
               
               
               Cow position:chr14:20483216-20483435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):120, 30

               
               
               Conread position:64-345
               
               
               Cow position:chr14:1977828-1978126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:64-350
               
               
               Cow position:chr14:8784430-8784143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:65-331
               
               
               Cow position:chr14:3564525-3564245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):34, 171

               
               
               Conread position:65-350
               
               
               Cow position:chr14:39037479-39037168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:66-274
               
               
               Cow position:chr14:15518125-15518348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 182

               
               
               Conread position:66-343
               
               
               Cow position:chr14:32732999-32732701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:70-280
               
               
               Cow position:chr14:44233938-44234156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:70-292
               
               
               Cow position:chr14:34697873-34697640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 173

               
               
               Conread position:70-346
               
               
               Cow position:chr14:8750319-8750023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:71-286
               
               
               Cow position:chr14:33643547-33643763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:72-353
               
               
               Cow position:chr14:16352565-16352288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:72-360
               
               
               Cow position:chr14:27919495-27919800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:73-228
               
               
               Cow position:chr14:18913552-18913388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:76-350
               
               
               Cow position:chr14:42596619-42596342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:77-350
               
               
               Cow position:chr14:12520071-12520359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):22, 161

               
               
               Conread position:85-350
               
               
               Cow position:chr14:37447247-37447521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:86-350
               
               
               Cow position:chr14:44258156-44257866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:88-327
               
               
               Cow position:chr14:3162928-3162692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):138, 33

               
               
               Conread position:92-350
               
               
               Cow position:chr14:15997547-15997823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:97-286
               
               
               Cow position:chr14:14581082-14580886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):29, 138

               
               
               Conread position:97-350
               
               
               Cow position:chr14:38747879-38747620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:98-350
               
               
               Cow position:chr14:2974880-2975141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 181

               
               
               Conread position:98-350
               
               
               Cow position:chr14:19394575-19394306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 132

               
               
               Conread position:99-352
               
               
               Cow position:chr14:46973648-46973380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 261

               
               
               Conread position:99-367
               
               
               Cow position:chr14:33830511-33830228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):23, 142

               
               
               Conread position:100-314
               
               
               Cow position:chr14:15313767-15313540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:100-344
               
               
               Cow position:chr14:25002246-25001983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:100-346
               
               
               Cow position:chr14:10742716-10742462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:104-343
               
               
               Cow position:chr14:36289595-36289849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:108-355
               
               
               Cow position:chr14:9538987-9539248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 177

               
               
               Conread position:111-286
               
               
               Cow position:chr14:41966442-41966261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:112-341
               
               
               Cow position:chr14:24608163-24607918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:113-350
               
               
               Cow position:chr14:40283818-40283561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 251

               
               
               Conread position:117-350
               
               
               Cow position:chr14:23478998-23478769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:119-364
               
               
               Cow position:chr14:12035598-12035337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:123-344
               
               
               Cow position:chr14:21933154-21933395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:125-350
               
               
               Cow position:chr14:4877046-4877286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:127-267
               
               
               Cow position:chr14:19513236-19513378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:128-350
               
               
               Cow position:chr14:44084297-44084547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:129-350
               
               
               Cow position:chr14:4202912-4203156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:135-367
               
               
               Cow position:chr14:12511726-12511970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:151-350
               
               
               Cow position:chr14:22941562-22941786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:174-341
               
               
               Cow position:chr14:1796318-1796142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 61

               
               
               Conread position:174-351
               
               
               Cow position:chr14:25381549-25381371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:186-347
               
               
               Cow position:chr14:41180594-41180769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:186-350
               
               
               Cow position:chr14:4282393-4282564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr14:29965132-29964963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:186-350
               
               
               Cow position:chr14:37422673-37422840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:186-350
               
               
               Cow position:chr14:42437140-42436968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:187-331
               
               
               Cow position:chr14:43192952-43192808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:188-350
               
               
               Cow position:chr14:40209013-40208838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:194-350
               
               
               Cow position:chr14:803794-803628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:233-350
               
               
               Cow position:chr14:33644026-33643902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:45-226
               
               
               Cow position:chr15:7827725-7827916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:49-350
               
               
               Cow position:chr15:1804018-1804348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:55-259
               
               
               Cow position:chr15:12316230-12316016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):44, 187

               
               
               Conread position:55-271
               
               
               Cow position:chr15:6586407-6586639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:55-280
               
               
               Cow position:chr15:44256783-44256546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:55-286
               
               
               Cow position:chr15:6905847-6905597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 205

               
               
               Conread position:55-286
               
               
               Cow position:chr15:40009344-40009590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:55-290
               
               
               Cow position:chr15:2669210-2668964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 144

               
               
               Conread position:55-327
               
               
               Cow position:chr15:42143159-42142871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:55-343
               
               
               Cow position:chr15:10088620-10088315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):117, 70

               
               
               Conread position:55-345
               
               
               Cow position:chr15:35417315-35417631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):44, 185

               
               
               Conread position:55-346
               
               
               Cow position:chr15:32226580-32226879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:55-349
               
               
               Cow position:chr15:31599639-31599325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:55-350
               
               
               Cow position:chr15:225497-225815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:55-350
               
               
               Cow position:chr15:794707-795032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:55-350
               
               
               Cow position:chr15:16823243-16822928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:55-350
               
               
               Cow position:chr15:29604411-29604711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:55-350
               
               
               Cow position:chr15:40798119-40798427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 113

               
               
               Conread position:55-351
               
               
               Cow position:chr15:7191955-7192274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:55-351
               
               
               Cow position:chr15:29810415-29810111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:55-352
               
               
               Cow position:chr15:17353344-17353659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:56-182
               
               
               Cow position:chr15:31085839-31085711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr15:34284057-34284187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:56-193
               
               
               Cow position:chr15:15881240-15881093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr15:34104571-34104435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-196
               
               
               Cow position:chr15:12837015-12837155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:56-210
               
               
               Cow position:chr15:241152-240992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 136

               
               
               Conread position:56-210
               
               
               Cow position:chr15:13669598-13669755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-214
               
               
               Cow position:chr15:30800187-30800016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:56-229
               
               
               Cow position:chr15:38846401-38846222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:56-231
               
               
               Cow position:chr15:23332576-23332759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-235
               
               
               Cow position:chr15:24128954-24128762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-238
               
               
               Cow position:chr15:52778224-52778420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-246
               
               
               Cow position:chr15:33679000-33678803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 49

               
               
               Conread position:56-258
               
               
               Cow position:chr15:36422962-36422749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 128

               
               
               Conread position:56-264
               
               
               Cow position:chr15:36621723-36621494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-267
               
               
               Cow position:chr15:11362877-11363094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:56-267
               
               
               Cow position:chr15:51632745-51632955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):136, 43

               
               
               Conread position:56-271
               
               
               Cow position:chr15:41583215-41582986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-273
               
               
               Cow position:chr15:7430286-7430054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-273
               
               
               Cow position:chr15:28126744-28126969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-274
               
               
               Cow position:chr15:23775656-23775864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:56-276
               
               
               Cow position:chr15:4501285-4501059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):20, 72

               
               
               Conread position:56-276
               
               
               Cow position:chr15:6046008-6046243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 165

               
               
               Conread position:56-276
               
               
               Cow position:chr15:29792607-29792832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:56-278
               
               
               Cow position:chr15:13683979-13684197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):131, 40

               
               
               Conread position:56-278
               
               
               Cow position:chr15:16936552-16936777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:56-278
               
               
               Cow position:chr15:20725309-20725545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-279
               
               
               Cow position:chr15:10846027-10845789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-279
               
               
               Cow position:chr15:41225256-41225493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-280
               
               
               Cow position:chr15:15707813-15708045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:56-280
               
               
               Cow position:chr15:18206207-18206445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr15:46611224-46611001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):127, 43

               
               
               Conread position:56-281
               
               
               Cow position:chr15:23703078-23702847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-285
               
               
               Cow position:chr15:25666918-25667157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-286
               
               
               Cow position:chr15:6462197-6462433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-286
               
               
               Cow position:chr15:9871105-9871353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-286
               
               
               Cow position:chr15:14856172-14856403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:56-286
               
               
               Cow position:chr15:21941540-21941782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 239

               
               
               Conread position:56-286
               
               
               Cow position:chr15:22751756-22751516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:56-286
               
               
               Cow position:chr15:22938472-22938698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-286
               
               
               Cow position:chr15:33605227-33604999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-286
               
               
               Cow position:chr15:42415563-42415318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 186

               
               
               Conread position:56-286
               
               
               Cow position:chr15:47105342-47105105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-286
               
               
               Cow position:chr15:53164327-53164085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:56-287
               
               
               Cow position:chr15:18605689-18605469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:56-287
               
               
               Cow position:chr15:25584784-25585028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-288
               
               
               Cow position:chr15:6331753-6331978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:56-288
               
               
               Cow position:chr15:36782027-36782264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-288
               
               
               Cow position:chr15:50957490-50957739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 199

               
               
               Conread position:56-288
               
               
               Cow position:chr15:53281200-53280960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:56-290
               
               
               Cow position:chr15:15215325-15215075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-290
               
               
               Cow position:chr15:21365892-21366138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:56-291
               
               
               Cow position:chr15:5632977-5632744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-291
               
               
               Cow position:chr15:33976388-33976630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-302
               
               
               Cow position:chr15:52739816-52740079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-313
               
               
               Cow position:chr15:27281169-27280898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-314
               
               
               Cow position:chr15:5571331-5571603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:56-314
               
               
               Cow position:chr15:11658260-11658547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:56-314
               
               
               Cow position:chr15:21832119-21832410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr15:37381936-37381653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-326
               
               
               Cow position:chr15:37985255-37985526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-334
               
               
               Cow position:chr15:34255442-34255720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:56-336
               
               
               Cow position:chr15:45323089-45322783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-336
               
               
               Cow position:chr15:49738742-49739031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:56-338
               
               
               Cow position:chr15:30820530-30820826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:56-338
               
               
               Cow position:chr15:32287453-32287739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 183

               
               
               Conread position:56-341
               
               
               Cow position:chr15:6970291-6969985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-341
               
               
               Cow position:chr15:16583406-16583694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:56-342
               
               
               Cow position:chr15:6647751-6647447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-342
               
               
               Cow position:chr15:23567821-23568130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-344
               
               
               Cow position:chr15:13387388-13387072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 111

               
               
               Conread position:56-344
               
               
               Cow position:chr15:22886854-22886554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-344
               
               
               Cow position:chr15:43626767-43626464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-345
               
               
               Cow position:chr15:5727943-5727649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:56-345
               
               
               Cow position:chr15:37931464-37931765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-346
               
               
               Cow position:chr15:1329794-1330110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-346
               
               
               Cow position:chr15:5536058-5535753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:56-346
               
               
               Cow position:chr15:5730242-5729933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:56-346
               
               
               Cow position:chr15:20486912-20487210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:56-346
               
               
               Cow position:chr15:26903499-26903184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:56-346
               
               
               Cow position:chr15:50322900-50322587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr15:3572399-3572707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:56-347
               
               
               Cow position:chr15:4535212-4534903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:56-347
               
               
               Cow position:chr15:8230276-8230575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:56-347
               
               
               Cow position:chr15:20390973-20391283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 83

               
               
               Conread position:56-347
               
               
               Cow position:chr15:33625257-33624949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 241

               
               
               Conread position:56-348
               
               
               Cow position:chr15:20370158-20370463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-348
               
               
               Cow position:chr15:23767960-23768266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:56-348
               
               
               Cow position:chr15:30001995-30001686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-349
               
               
               Cow position:chr15:9177908-9178211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:56-350
               
               
               Cow position:chr15:2952824-2953144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 315

               
               
               Conread position:56-350
               
               
               Cow position:chr15:3699977-3700298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr15:4138442-4138126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 200

               
               
               Conread position:56-350
               
               
               Cow position:chr15:4485448-4485143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-350
               
               
               Cow position:chr15:5234699-5235008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr15:10245702-10246004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:56-350
               
               
               Cow position:chr15:10336060-10335746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr15:14871051-14870732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr15:16543159-16543464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr15:17084517-17084199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 312

               
               
               Conread position:56-350
               
               
               Cow position:chr15:17233499-17233183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:56-350
               
               
               Cow position:chr15:19186310-19186624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 185

               
               
               Conread position:56-350
               
               
               Cow position:chr15:19403283-19402994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr15:20082065-20081761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr15:20352139-20351821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr15:21388859-21389174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 189

               
               
               Conread position:56-350
               
               
               Cow position:chr15:21803352-21803668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 119

               
               
               Conread position:56-350
               
               
               Cow position:chr15:22095426-22095128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr15:22136987-22136679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr15:22532546-22532241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr15:23798215-23798540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-350
               
               
               Cow position:chr15:24976886-24977184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr15:24994220-24994524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr15:26158312-26158607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr15:26421291-26421607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr15:26752707-26752992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr15:26896406-26896705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr15:27863017-27863336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:56-350
               
               
               Cow position:chr15:27900199-27900520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr15:27972910-27973228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-350
               
               
               Cow position:chr15:28924461-28924765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:56-350
               
               
               Cow position:chr15:30982221-30981930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):179, 19

               
               
               Conread position:56-350
               
               
               Cow position:chr15:33306413-33306099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr15:35112583-35112893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr15:35642325-35642005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-350
               
               
               Cow position:chr15:36391977-36391664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 141

               
               
               Conread position:56-350
               
               
               Cow position:chr15:38883461-38883138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr15:39598543-39598231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):68, 51

               
               
               Conread position:56-350
               
               
               Cow position:chr15:39599745-39599436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr15:39621643-39621328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):95, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr15:42788849-42789159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr15:44641203-44640885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-350
               
               
               Cow position:chr15:47843802-47844104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr15:50302491-50302173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr15:50341420-50341110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr15:52482522-52482838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:56-351
               
               
               Cow position:chr15:10456705-10457024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:56-351
               
               
               Cow position:chr15:11995720-11996039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:56-351
               
               
               Cow position:chr15:22531967-22531655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-351
               
               
               Cow position:chr15:45217125-45216826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:56-353
               
               
               Cow position:chr15:17100409-17100723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-353
               
               
               Cow position:chr15:20472241-20472561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:56-353
               
               
               Cow position:chr15:23180727-23180427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:56-353
               
               
               Cow position:chr15:29340367-29340047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:56-355
               
               
               Cow position:chr15:11011304-11011619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-355
               
               
               Cow position:chr15:16112710-16112384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 169

               
               
               Conread position:56-355
               
               
               Cow position:chr15:21894087-21893763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-362
               
               
               Cow position:chr15:39406040-39405721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-363
               
               
               Cow position:chr15:22168363-22168048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-365
               
               
               Cow position:chr15:4373780-4373460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 221

               
               
               Conread position:56-368
               
               
               Cow position:chr15:32979729-32980062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 191

               
               
               Conread position:56-373
               
               
               Cow position:chr15:15041130-15041455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 130

               
               
               Conread position:57-260
               
               
               Cow position:chr15:21523094-21522875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 199

               
               
               Conread position:57-286
               
               
               Cow position:chr15:51898535-51898292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 240

               
               
               Conread position:57-329
               
               
               Cow position:chr15:40957883-40957589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:57-335
               
               
               Cow position:chr15:21421246-21420942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):67, 195

               
               
               Conread position:57-344
               
               
               Cow position:chr15:15573516-15573840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 195

               
               
               Conread position:57-347
               
               
               Cow position:chr15:12170550-12170236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:57-347
               
               
               Cow position:chr15:37645275-37644982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:57-350
               
               
               Cow position:chr15:12723390-12723078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 47

               
               
               Conread position:57-350
               
               
               Cow position:chr15:14020775-14020474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:57-350
               
               
               Cow position:chr15:20458996-20459319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-350
               
               
               Cow position:chr15:24968096-24967783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 84

               
               
               Conread position:57-350
               
               
               Cow position:chr15:34206893-34207198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:57-350
               
               
               Cow position:chr15:46868409-46868725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:57-350
               
               
               Cow position:chr15:47042333-47042642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:57-350
               
               
               Cow position:chr15:47822105-47821805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 42

               
               
               Conread position:57-364
               
               
               Cow position:chr15:13554645-13554327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:57-371
               
               
               Cow position:chr15:44658664-44658332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 174

               
               
               Conread position:58-182
               
               
               Cow position:chr15:37777654-37777532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:58-209
               
               
               Cow position:chr15:9267760-9267914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:58-212
               
               
               Cow position:chr15:14259632-14259791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:58-271
               
               
               Cow position:chr15:28177766-28177550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:58-280
               
               
               Cow position:chr15:24044795-24045030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-290
               
               
               Cow position:chr15:41619884-41620132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 191

               
               
               Conread position:58-332
               
               
               Cow position:chr15:33285185-33284884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:58-350
               
               
               Cow position:chr15:1722548-1722860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:58-350
               
               
               Cow position:chr15:16616497-16616181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:58-350
               
               
               Cow position:chr15:25208462-25208768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-350
               
               
               Cow position:chr15:26911776-26912083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-350
               
               
               Cow position:chr15:53036677-53036976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:58-353
               
               
               Cow position:chr15:16476442-16476744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:59-325
               
               
               Cow position:chr15:18720616-18720328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 176

               
               
               Conread position:59-341
               
               
               Cow position:chr15:24031481-24031198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:60-259
               
               
               Cow position:chr15:53402697-53402901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 46

               
               
               Conread position:60-346
               
               
               Cow position:chr15:50351118-50350842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):256, 39

               
               
               Conread position:60-350
               
               
               Cow position:chr15:26918972-26919285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 98

               
               
               Conread position:60-350
               
               
               Cow position:chr15:47842957-47843261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:61-286
               
               
               Cow position:chr15:11646189-11646428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:61-347
               
               
               Cow position:chr15:16604122-16603817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:62-182
               
               
               Cow position:chr15:18284541-18284412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:62-347
               
               
               Cow position:chr15:9970684-9970986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:62-350
               
               
               Cow position:chr15:44051198-44051493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:62-367
               
               
               Cow position:chr15:5071801-5072111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 172

               
               
               Conread position:64-288
               
               
               Cow position:chr15:19119314-19119550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:64-337
               
               
               Cow position:chr15:1083076-1083374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:66-350
               
               
               Cow position:chr15:36259307-36259615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:66-364
               
               
               Cow position:chr15:40999764-41000096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:68-350
               
               
               Cow position:chr15:45585019-45584722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):9, 177

               
               
               Conread position:69-280
               
               
               Cow position:chr15:4350308-4350534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:70-280
               
               
               Cow position:chr15:45125-45347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 172

               
               
               Conread position:70-350
               
               
               Cow position:chr15:16667208-16667505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:70-350
               
               
               Cow position:chr15:21821629-21821934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):29, 170

               
               
               Conread position:70-353
               
               
               Cow position:chr15:44437025-44436740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:71-350
               
               
               Cow position:chr15:33643376-33643077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:72-276
               
               
               Cow position:chr15:34144866-34145081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:72-286
               
               
               Cow position:chr15:25306833-25306609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 168

               
               
               Conread position:73-266
               
               
               Cow position:chr15:7749849-7750054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 89

               
               
               Conread position:73-343
               
               
               Cow position:chr15:2968621-2968333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:73-350
               
               
               Cow position:chr15:36773406-36773704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:77-245
               
               
               Cow position:chr15:39619442-39619263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 158

               
               
               Conread position:81-350
               
               
               Cow position:chr15:608430-608136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 160

               
               
               Conread position:81-350
               
               
               Cow position:chr15:7535388-7535665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 183

               
               
               Conread position:81-350
               
               
               Cow position:chr15:25907193-25906896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:81-350
               
               
               Cow position:chr15:36888100-36887826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:83-350
               
               
               Cow position:chr15:30986013-30986306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:85-280
               
               
               Cow position:chr15:38877027-38877235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:85-350
               
               
               Cow position:chr15:32323929-32324215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:88-291
               
               
               Cow position:chr15:12441552-12441766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):13, 156

               
               
               Conread position:88-350
               
               
               Cow position:chr15:84974-85255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 152

               
               
               Conread position:92-364
               
               
               Cow position:chr15:5726590-5726301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 141

               
               
               Conread position:95-350
               
               
               Cow position:chr15:39316570-39316852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):31, 277

               
               
               Conread position:96-350
               
               
               Cow position:chr15:2141036-2141314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:97-350
               
               
               Cow position:chr15:34140239-34139970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):29, 6

               
               
               Conread position:98-288
               
               
               Cow position:chr15:16657754-16657553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:100-343
               
               
               Cow position:chr15:35945781-35945526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):5, 28

               
               
               Conread position:100-350
               
               
               Cow position:chr15:23275794-23275531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:104-345
               
               
               Cow position:chr15:12655656-12655922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:104-350
               
               
               Cow position:chr15:10608049-10608316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):5, 49

               
               
               Conread position:105-347
               
               
               Cow position:chr15:53045624-53045885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):18, 57

               
               
               Conread position:105-350
               
               
               Cow position:chr15:4296019-4295753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:105-350
               
               
               Cow position:chr15:22871861-22871603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 127

               
               
               Conread position:107-350
               
               
               Cow position:chr15:10737496-10737751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):52, 112

               
               
               Conread position:109-276
               
               
               Cow position:chr15:23927219-23927401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:109-350
               
               
               Cow position:chr15:6905312-6905066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:113-346
               
               
               Cow position:chr15:915604-915849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:113-350
               
               
               Cow position:chr15:22553299-22553552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:114-350
               
               
               Cow position:chr15:8354289-8354030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:115-350
               
               
               Cow position:chr15:18671211-18671465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:117-347
               
               
               Cow position:chr15:28823579-28823826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:121-367
               
               
               Cow position:chr15:4418165-4418429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:123-346
               
               
               Cow position:chr15:286712-286471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:123-350
               
               
               Cow position:chr15:10512037-10512276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:123-350
               
               
               Cow position:chr15:37205278-37205038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:123-350
               
               
               Cow position:chr15:43599418-43599178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:123-417
               
               
               Cow position:chr15:20422545-20422855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 231

               
               
               Conread position:125-350
               
               
               Cow position:chr15:12870632-12870875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:126-350
               
               
               Cow position:chr15:662241-662479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:126-350
               
               
               Cow position:chr15:9107267-9107024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):55, 228

               
               
               Conread position:128-364
               
               
               Cow position:chr15:29331232-29330979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:136-350
               
               
               Cow position:chr15:10231521-10231760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 233

               
               
               Conread position:144-352
               
               
               Cow position:chr15:39326299-39326530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:151-344
               
               
               Cow position:chr15:16927891-16928099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:151-350
               
               
               Cow position:chr15:31560196-31560398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:151-366
               
               
               Cow position:chr15:34284205-34284440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:153-350
               
               
               Cow position:chr15:31928694-31928907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:168-351
               
               
               Cow position:chr15:32977667-32977859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):112, 15

               
               
               Conread position:177-350
               
               
               Cow position:chr15:10660382-10660566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:182-350
               
               
               Cow position:chr15:26718755-26718931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:186-350
               
               
               Cow position:chr15:14176338-14176510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:186-350
               
               
               Cow position:chr15:14988151-14987979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:186-350
               
               
               Cow position:chr15:35425652-35425820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 53

               
               
               Conread position:186-350
               
               
               Cow position:chr15:35440914-35441089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:186-355
               
               
               Cow position:chr15:41527815-41527988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:190-350
               
               
               Cow position:chr15:9497342-9497511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:191-344
               
               
               Cow position:chr15:6272731-6272894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:200-350
               
               
               Cow position:chr15:50660778-50660611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:205-350
               
               
               Cow position:chr15:14281694-14281538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:216-348
               
               
               Cow position:chr15:23719350-23719492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:48-337
               
               
               Cow position:chr16:28112143-28111852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:48-342
               
               
               Cow position:chr16:53892003-53891694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:49-348
               
               
               Cow position:chr16:26654962-26655268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:49-350
               
               
               Cow position:chr16:56875875-56875563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:50-214
               
               
               Cow position:chr16:50382980-50383157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:50-291
               
               
               Cow position:chr16:33482216-33482473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 228

               
               
               Conread position:51-267
               
               
               Cow position:chr16:16368950-16368731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:51-273
               
               
               Cow position:chr16:4503059-4503296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 194

               
               
               Conread position:52-280
               
               
               Cow position:chr16:51556524-51556305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:52-350
               
               
               Cow position:chr16:49169602-49169281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:53-350
               
               
               Cow position:chr16:4192638-4192334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):46, 177

               
               
               Conread position:55-190
               
               
               Cow position:chr16:35343692-35343548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:55-203
               
               
               Cow position:chr16:8481308-8481153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-251
               
               
               Cow position:chr16:5293445-5293638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:55-267
               
               
               Cow position:chr16:9790849-9790623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):9, 193

               
               
               Conread position:55-276
               
               
               Cow position:chr16:30311326-30311089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:55-280
               
               
               Cow position:chr16:5845453-5845689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:55-280
               
               
               Cow position:chr16:22868392-22868157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):45, 188

               
               
               Conread position:55-286
               
               
               Cow position:chr16:51399963-51399723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:55-288
               
               
               Cow position:chr16:11274692-11274932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 113

               
               
               Conread position:55-290
               
               
               Cow position:chr16:45534966-45535209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):70, 165

               
               
               Conread position:55-333
               
               
               Cow position:chr16:4972242-4971943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 239

               
               
               Conread position:55-337
               
               
               Cow position:chr16:39514295-39513988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:55-339
               
               
               Cow position:chr16:27701462-27701169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:55-342
               
               
               Cow position:chr16:32327435-32327751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:55-343
               
               
               Cow position:chr16:13969596-13969276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):44, 194

               
               
               Conread position:55-344
               
               
               Cow position:chr16:49229985-49229673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:55-347
               
               
               Cow position:chr16:19003288-19002994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:55-347
               
               
               Cow position:chr16:23737966-23738279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):44, 50

               
               
               Conread position:55-350
               
               
               Cow position:chr16:2750774-2751072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 152

               
               
               Conread position:55-350
               
               
               Cow position:chr16:4399505-4399836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 205

               
               
               Conread position:55-350
               
               
               Cow position:chr16:8933637-8933328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:55-350
               
               
               Cow position:chr16:12361189-12360872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:55-350
               
               
               Cow position:chr16:26649851-26649528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr16:28922571-28922873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 47

               
               
               Conread position:55-350
               
               
               Cow position:chr16:31117837-31117514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:55-350
               
               
               Cow position:chr16:36203832-36203518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:55-350
               
               
               Cow position:chr16:45731592-45731291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:55-350
               
               
               Cow position:chr16:50282648-50282331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:55-351
               
               
               Cow position:chr16:30096347-30096033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 188

               
               
               Conread position:55-352
               
               
               Cow position:chr16:13713131-13712830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:55-364
               
               
               Cow position:chr16:4699187-4698873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:55-367
               
               
               Cow position:chr16:29158911-29159237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 168

               
               
               Conread position:56-166
               
               
               Cow position:chr16:11100013-11099897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-178
               
               
               Cow position:chr16:14721959-14721837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 95

               
               
               Conread position:56-181
               
               
               Cow position:chr16:41654070-41654201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr16:14360888-14361020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr16:24403514-24403653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr16:47336514-47336656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-200
               
               
               Cow position:chr16:594445-594294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-206
               
               
               Cow position:chr16:45046412-45046569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-208
               
               
               Cow position:chr16:8706767-8706611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:56-214
               
               
               Cow position:chr16:47662497-47662669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-215
               
               
               Cow position:chr16:42970147-42969971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-223
               
               
               Cow position:chr16:43152921-43152750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 59

               
               
               Conread position:56-226
               
               
               Cow position:chr16:30939517-30939702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr16:33751982-33752164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-250
               
               
               Cow position:chr16:51531189-51530976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:56-251
               
               
               Cow position:chr16:7997828-7997630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:56-263
               
               
               Cow position:chr16:30209546-30209754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 52

               
               
               Conread position:56-263
               
               
               Cow position:chr16:43804281-43804497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-266
               
               
               Cow position:chr16:23810706-23810918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):132, 37

               
               
               Conread position:56-268
               
               
               Cow position:chr16:15188982-15189195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:56-269
               
               
               Cow position:chr16:11621019-11620802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:56-269
               
               
               Cow position:chr16:31159794-31159562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-271
               
               
               Cow position:chr16:16177602-16177830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-272
               
               
               Cow position:chr16:47620164-47620392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-273
               
               
               Cow position:chr16:4103373-4103148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:56-274
               
               
               Cow position:chr16:24147938-24148176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-275
               
               
               Cow position:chr16:44973280-44973510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:56-276
               
               
               Cow position:chr16:29066952-29067178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-276
               
               
               Cow position:chr16:42253790-42253541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr16:45603463-45603686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:56-277
               
               
               Cow position:chr16:30143429-30143188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-277
               
               
               Cow position:chr16:42092592-42092370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):124, 44

               
               
               Conread position:56-278
               
               
               Cow position:chr16:16424820-16424591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:56-278
               
               
               Cow position:chr16:33507847-33508072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-279
               
               
               Cow position:chr16:45047840-45047614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:56-285
               
               
               Cow position:chr16:30705890-30706132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):44, 161

               
               
               Conread position:56-285
               
               
               Cow position:chr16:46434335-46434091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 242

               
               
               Conread position:56-286
               
               
               Cow position:chr16:8367040-8366804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-286
               
               
               Cow position:chr16:13233161-13232923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-286
               
               
               Cow position:chr16:13973497-13973260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-286
               
               
               Cow position:chr16:26342061-26342292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):70, 137

               
               
               Conread position:56-286
               
               
               Cow position:chr16:44676671-44676900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:56-286
               
               
               Cow position:chr16:51869422-51869665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 177

               
               
               Conread position:56-286
               
               
               Cow position:chr16:52636598-52636358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:56-286
               
               
               Cow position:chr16:55308745-55308515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-288
               
               
               Cow position:chr16:7542073-7542317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-288
               
               
               Cow position:chr16:11619538-11619778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-288
               
               
               Cow position:chr16:42217906-42217661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:56-288
               
               
               Cow position:chr16:46521686-46521919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:56-290
               
               
               Cow position:chr16:4372712-4372462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:56-291
               
               
               Cow position:chr16:4144848-4145097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 235

               
               
               Conread position:56-309
               
               
               Cow position:chr16:11568329-11568064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):70, 74

               
               
               Conread position:56-311
               
               
               Cow position:chr16:28692926-28692667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:56-314
               
               
               Cow position:chr16:675277-675554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):44, 196

               
               
               Conread position:56-314
               
               
               Cow position:chr16:28694525-28694793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 204

               
               
               Conread position:56-314
               
               
               Cow position:chr16:34168379-34168650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 197

               
               
               Conread position:56-314
               
               
               Cow position:chr16:35195827-35195549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:56-314
               
               
               Cow position:chr16:37380055-37380334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:56-320
               
               
               Cow position:chr16:24228566-24228288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-321
               
               
               Cow position:chr16:24747093-24747357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:56-321
               
               
               Cow position:chr16:27249193-27249468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 255

               
               
               Conread position:56-326
               
               
               Cow position:chr16:16402543-16402250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-332
               
               
               Cow position:chr16:9728988-9729278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:56-334
               
               
               Cow position:chr16:53267512-53267810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:56-335
               
               
               Cow position:chr16:49216179-49215916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:56-336
               
               
               Cow position:chr16:50288941-50289239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-337
               
               
               Cow position:chr16:13181524-13181825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 127

               
               
               Conread position:56-337
               
               
               Cow position:chr16:29557847-29557543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-337
               
               
               Cow position:chr16:42257236-42257535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:56-338
               
               
               Cow position:chr16:16096521-16096825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:56-340
               
               
               Cow position:chr16:820035-820341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-340
               
               
               Cow position:chr16:35757997-35758293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-342
               
               
               Cow position:chr16:5726710-5727026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:56-344
               
               
               Cow position:chr16:5415969-5415666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 60

               
               
               Conread position:56-344
               
               
               Cow position:chr16:25965290-25965594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:56-344
               
               
               Cow position:chr16:29766127-29766421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:56-344
               
               
               Cow position:chr16:33226748-33226444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-345
               
               
               Cow position:chr16:11105333-11105650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:56-345
               
               
               Cow position:chr16:18141546-18141231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-345
               
               
               Cow position:chr16:25484151-25484431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:56-345
               
               
               Cow position:chr16:45139453-45139762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:56-346
               
               
               Cow position:chr16:7702315-7702616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:56-346
               
               
               Cow position:chr16:11775266-11774951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-346
               
               
               Cow position:chr16:24825854-24826170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-346
               
               
               Cow position:chr16:43105729-43105419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 164

               
               
               Conread position:56-347
               
               
               Cow position:chr16:37062611-37062300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-347
               
               
               Cow position:chr16:48492967-48493278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-347
               
               
               Cow position:chr16:53627639-53627330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-348
               
               
               Cow position:chr16:3614532-3614839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:56-348
               
               
               Cow position:chr16:28833626-28833941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-348
               
               
               Cow position:chr16:49126400-49126088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-349
               
               
               Cow position:chr16:4979597-4979901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-350
               
               
               Cow position:chr16:571133-570819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr16:2223623-2223296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr16:4499222-4499528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr16:4857306-4857001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:56-350
               
               
               Cow position:chr16:4910747-4910425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 316

               
               
               Conread position:56-350
               
               
               Cow position:chr16:4911625-4911346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:56-350
               
               
               Cow position:chr16:5636376-5636685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-350
               
               
               Cow position:chr16:7152389-7152072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:56-350
               
               
               Cow position:chr16:7456681-7456365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 199

               
               
               Conread position:56-350
               
               
               Cow position:chr16:7504883-7505185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr16:8026061-8025755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr16:8438841-8438551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:56-350
               
               
               Cow position:chr16:8522603-8522290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr16:9973718-9973398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr16:10040054-10039747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):47, 301

               
               
               Conread position:56-350
               
               
               Cow position:chr16:10148065-10148382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr16:11615444-11615144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr16:13195549-13195239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr16:13307082-13306771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr16:13579059-13578761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr16:13689448-13689767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr16:13698292-13698615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):38, 311

               
               
               Conread position:56-350
               
               
               Cow position:chr16:14754538-14754222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr16:15320685-15320384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:56-350
               
               
               Cow position:chr16:15824658-15824343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr16:17745619-17745936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr16:18205755-18206059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-350
               
               
               Cow position:chr16:18402481-18402787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr16:19408728-19408427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr16:20025228-20025542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr16:21904946-21905247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr16:22804798-22804497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr16:22842269-22841960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:56-350
               
               
               Cow position:chr16:22850112-22850425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr16:22919281-22919568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):175, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr16:23066453-23066754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr16:23563921-23564232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:56-350
               
               
               Cow position:chr16:26373167-26372851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 188

               
               
               Conread position:56-350
               
               
               Cow position:chr16:26676906-26676586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 215

               
               
               Conread position:56-350
               
               
               Cow position:chr16:28191851-28192154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr16:29037697-29038015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr16:32302203-32301906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:56-350
               
               
               Cow position:chr16:32781146-32781464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr16:33054680-33054380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr16:33645798-33646116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr16:35188038-35188350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-350
               
               
               Cow position:chr16:35623461-35623149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr16:38905442-38905134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:56-350
               
               
               Cow position:chr16:40333541-40333225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:56-350
               
               
               Cow position:chr16:40562011-40562333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr16:41590563-41590864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr16:41752789-41752483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr16:42339989-42340297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr16:43308785-43308463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 233

               
               
               Conread position:56-350
               
               
               Cow position:chr16:43801125-43800818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr16:44210766-44210457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr16:45677068-45676762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr16:46552602-46552895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:56-350
               
               
               Cow position:chr16:47518634-47518947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 118

               
               
               Conread position:56-350
               
               
               Cow position:chr16:47820355-47820668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr16:48087087-48086769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):43, 298

               
               
               Conread position:56-350
               
               
               Cow position:chr16:48385618-48385302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:56-350
               
               
               Cow position:chr16:52835096-52834787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr16:52889626-52889311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr16:53086541-53086240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr16:53509206-53508885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr16:54679451-54679766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-351
               
               
               Cow position:chr16:238045-238370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:56-351
               
               
               Cow position:chr16:5725258-5725569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:56-351
               
               
               Cow position:chr16:13989767-13990078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:56-351
               
               
               Cow position:chr16:18758060-18757738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 226

               
               
               Conread position:56-351
               
               
               Cow position:chr16:19643679-19643991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:56-351
               
               
               Cow position:chr16:42242334-42242015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:56-351
               
               
               Cow position:chr16:43275806-43276121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-351
               
               
               Cow position:chr16:48340908-48340593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:56-351
               
               
               Cow position:chr16:50417903-50417595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-352
               
               
               Cow position:chr16:48006707-48006390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-352
               
               
               Cow position:chr16:54578951-54579269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-353
               
               
               Cow position:chr16:6379326-6379021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:56-353
               
               
               Cow position:chr16:7665415-7665740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:56-353
               
               
               Cow position:chr16:26610417-26610742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 315

               
               
               Conread position:56-353
               
               
               Cow position:chr16:43506014-43505707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 107

               
               
               Conread position:56-364
               
               
               Cow position:chr16:4626611-4626276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-364
               
               
               Cow position:chr16:8812303-8811979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-364
               
               
               Cow position:chr16:14242160-14242483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-364
               
               
               Cow position:chr16:23483072-23483398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:56-366
               
               
               Cow position:chr16:15960511-15960174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-366
               
               
               Cow position:chr16:18354168-18353840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-366
               
               
               Cow position:chr16:19003736-19003416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:56-366
               
               
               Cow position:chr16:23472535-23472866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-366
               
               
               Cow position:chr16:25170174-25170510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:56-366
               
               
               Cow position:chr16:30909147-30908830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 216

               
               
               Conread position:56-366
               
               
               Cow position:chr16:32132312-32132623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:56-366
               
               
               Cow position:chr16:42079058-42078731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-366
               
               
               Cow position:chr16:56082576-56082249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:56-367
               
               
               Cow position:chr16:48370164-48369833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-367
               
               
               Cow position:chr16:49336011-49336340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-367
               
               
               Cow position:chr16:54665019-54664679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 117

               
               
               Conread position:56-369
               
               
               Cow position:chr16:24702636-24702969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 307

               
               
               Conread position:56-391
               
               
               Cow position:chr16:21450632-21450987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:57-182
               
               
               Cow position:chr16:16231867-16232000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-182
               
               
               Cow position:chr16:29380039-29380170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:57-182
               
               
               Cow position:chr16:49141773-49141651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:57-208
               
               
               Cow position:chr16:31558677-31558830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):55, 123

               
               
               Conread position:57-276
               
               
               Cow position:chr16:8807305-8807076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):67, 179

               
               
               Conread position:57-286
               
               
               Cow position:chr16:13791298-13791543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 242

               
               
               Conread position:57-288
               
               
               Cow position:chr16:54287661-54287895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:57-343
               
               
               Cow position:chr16:39394361-39394663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:57-344
               
               
               Cow position:chr16:8323201-8322887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:57-344
               
               
               Cow position:chr16:27262160-27261856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:57-344
               
               
               Cow position:chr16:52789846-52790149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:57-346
               
               
               Cow position:chr16:23681157-23681459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:57-347
               
               
               Cow position:chr16:8315392-8315096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:57-350
               
               
               Cow position:chr16:5363677-5364002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr16:7498853-7499151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:57-350
               
               
               Cow position:chr16:15370464-15370787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-350
               
               
               Cow position:chr16:20634093-20633775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:57-350
               
               
               Cow position:chr16:25839402-25839721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:57-350
               
               
               Cow position:chr16:29095739-29096022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:57-350
               
               
               Cow position:chr16:39616528-39616823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-350
               
               
               Cow position:chr16:48398461-48398153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:58-184
               
               
               Cow position:chr16:15504740-15504604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:58-286
               
               
               Cow position:chr16:30515802-30515563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 162

               
               
               Conread position:58-327
               
               
               Cow position:chr16:13752337-13752054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:58-327
               
               
               Cow position:chr16:33791058-33790760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:58-340
               
               
               Cow position:chr16:23823233-23822936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:58-345
               
               
               Cow position:chr16:10592226-10592526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:58-346
               
               
               Cow position:chr16:29608304-29608606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:58-347
               
               
               Cow position:chr16:16548397-16548707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:58-350
               
               
               Cow position:chr16:3633901-3634217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:58-350
               
               
               Cow position:chr16:8840678-8840992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 175

               
               
               Conread position:58-350
               
               
               Cow position:chr16:14106433-14106738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:58-350
               
               
               Cow position:chr16:14758516-14758836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:58-350
               
               
               Cow position:chr16:19670546-19670252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:58-350
               
               
               Cow position:chr16:28396309-28395980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):97, 8

               
               
               Conread position:58-350
               
               
               Cow position:chr16:33704585-33704906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):24, 104

               
               
               Conread position:59-224
               
               
               Cow position:chr16:3288818-3288985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:59-344
               
               
               Cow position:chr16:13611663-13611359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:59-347
               
               
               Cow position:chr16:30037208-30036893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:59-347
               
               
               Cow position:chr16:51113090-51112782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 183

               
               
               Conread position:59-350
               
               
               Cow position:chr16:42443940-42444257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:59-351
               
               
               Cow position:chr16:29655112-29655428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:59-364
               
               
               Cow position:chr16:17142719-17143049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):40, 183

               
               
               Conread position:59-366
               
               
               Cow position:chr16:50688308-50688637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:60-207
               
               
               Cow position:chr16:590121-589981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:60-280
               
               
               Cow position:chr16:39417329-39417099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:60-286
               
               
               Cow position:chr16:56912933-56912687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 243

               
               
               Conread position:60-318
               
               
               Cow position:chr16:22860971-22860700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:60-343
               
               
               Cow position:chr16:32970278-32969986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):112, 35

               
               
               Conread position:60-350
               
               
               Cow position:chr16:8193233-8193554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):31, 129

               
               
               Conread position:60-350
               
               
               Cow position:chr16:9985602-9985292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:60-350
               
               
               Cow position:chr16:23871863-23871550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):39, 184

               
               
               Conread position:60-350
               
               
               Cow position:chr16:38709039-38708736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 50

               
               
               Conread position:60-350
               
               
               Cow position:chr16:39165033-39165340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):65, 178

               
               
               Conread position:60-350
               
               
               Cow position:chr16:48145611-48145303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:61-220
               
               
               Cow position:chr16:47017456-47017287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:61-280
               
               
               Cow position:chr16:26846023-26846232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:61-329
               
               
               Cow position:chr16:11008131-11008425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:61-334
               
               
               Cow position:chr16:9932949-9933241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:62-344
               
               
               Cow position:chr16:5896209-5896513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:62-346
               
               
               Cow position:chr16:12633683-12633981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):37, 54

               
               
               Conread position:62-350
               
               
               Cow position:chr16:53830799-53830491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:62-367
               
               
               Cow position:chr16:8066091-8065771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:63-196
               
               
               Cow position:chr16:4277923-4277786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:63-291
               
               
               Cow position:chr16:4712692-4712932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 182

               
               
               Conread position:63-350
               
               
               Cow position:chr16:14124947-14125237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 47

               
               
               Conread position:63-350
               
               
               Cow position:chr16:41530500-41530200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):36, 175

               
               
               Conread position:64-288
               
               
               Cow position:chr16:4981588-4981348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:64-350
               
               
               Cow position:chr16:49125732-49125427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:65-305
               
               
               Cow position:chr16:19152490-19152741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 190

               
               
               Conread position:65-338
               
               
               Cow position:chr16:16265309-16265014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:66-242
               
               
               Cow position:chr16:52182068-52182251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:66-286
               
               
               Cow position:chr16:24672567-24672331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):33, 183

               
               
               Conread position:66-350
               
               
               Cow position:chr16:11957790-11957477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:66-350
               
               
               Cow position:chr16:52275336-52275028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:67-280
               
               
               Cow position:chr16:39237738-39237967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 100

               
               
               Conread position:70-185
               
               
               Cow position:chr16:15867931-15867812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:70-212
               
               
               Cow position:chr16:15954362-15954219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:70-276
               
               
               Cow position:chr16:26500958-26501175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:70-288
               
               
               Cow position:chr16:39646353-39646574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:70-337
               
               
               Cow position:chr16:42752658-42752938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:70-355
               
               
               Cow position:chr16:17982346-17982037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:71-288
               
               
               Cow position:chr16:49404356-49404130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:71-350
               
               
               Cow position:chr16:5256795-5257097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:72-268
               
               
               Cow position:chr16:14028820-14028620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 54

               
               
               Conread position:72-350
               
               
               Cow position:chr16:37452818-37452514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):27, 299

               
               
               Conread position:73-332
               
               
               Cow position:chr16:16552363-16552644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 171

               
               
               Conread position:73-350
               
               
               Cow position:chr16:14685588-14685289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:73-351
               
               
               Cow position:chr16:17626731-17627032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):26, 169

               
               
               Conread position:78-347
               
               
               Cow position:chr16:6344633-6344344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:80-346
               
               
               Cow position:chr16:41689515-41689790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:81-238
               
               
               Cow position:chr16:54598069-54598229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:81-350
               
               
               Cow position:chr16:20205261-20205561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 295

               
               
               Conread position:83-319
               
               
               Cow position:chr16:25928385-25928139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:83-341
               
               
               Cow position:chr16:3047530-3047248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:86-286
               
               
               Cow position:chr16:7496016-7496223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):100, 128

               
               
               Conread position:89-350
               
               
               Cow position:chr16:8076691-8076401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:92-364
               
               
               Cow position:chr16:7549788-7550083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:93-309
               
               
               Cow position:chr16:14699744-14699977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:96-263
               
               
               Cow position:chr16:28198121-28198289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:96-291
               
               
               Cow position:chr16:33229902-33230107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 197

               
               
               Conread position:96-364
               
               
               Cow position:chr16:17945349-17945636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:97-346
               
               
               Cow position:chr16:52133689-52133420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:98-285
               
               
               Cow position:chr16:42072900-42072708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:98-286
               
               
               Cow position:chr16:54083861-54084062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 198

               
               
               Conread position:98-350
               
               
               Cow position:chr16:34153747-34153471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 168

               
               
               Conread position:98-352
               
               
               Cow position:chr16:7583225-7583500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 142

               
               
               Conread position:99-350
               
               
               Cow position:chr16:47854770-47855038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:100-346
               
               
               Cow position:chr16:14974703-14974447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:100-350
               
               
               Cow position:chr16:17282496-17282759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:100-350
               
               
               Cow position:chr16:31348938-31348665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:100-350
               
               
               Cow position:chr16:38620791-38621055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:101-288
               
               
               Cow position:chr16:21369314-21369517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:102-343
               
               
               Cow position:chr16:46628003-46627747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:103-342
               
               
               Cow position:chr16:3246374-3246112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:103-353
               
               
               Cow position:chr16:25386813-25387077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:104-350
               
               
               Cow position:chr16:51246781-51247035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:105-350
               
               
               Cow position:chr16:42734179-42733911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:106-269
               
               
               Cow position:chr16:35296908-35297079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:107-280
               
               
               Cow position:chr16:50532901-50533075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:107-350
               
               
               Cow position:chr16:38243826-38243563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):19, 257

               
               
               Conread position:108-319
               
               
               Cow position:chr16:9136013-9136238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 179

               
               
               Conread position:108-350
               
               
               Cow position:chr16:25380659-25380394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):16, 130

               
               
               Conread position:108-350
               
               
               Cow position:chr16:27723053-27723325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 42

               
               
               Conread position:109-281
               
               
               Cow position:chr16:16280605-16280426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:109-348
               
               
               Cow position:chr16:689552-689802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 97

               
               
               Conread position:111-350
               
               
               Cow position:chr16:22380515-22380253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):14, 130

               
               
               Conread position:112-210
               
               
               Cow position:chr16:8084315-8084212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:112-279
               
               
               Cow position:chr16:12273909-12274090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:113-350
               
               
               Cow position:chr16:29712262-29712519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:114-350
               
               
               Cow position:chr16:12320065-12320322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:115-350
               
               
               Cow position:chr16:21317747-21317492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:115-350
               
               
               Cow position:chr16:27161006-27160763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:116-285
               
               
               Cow position:chr16:20614327-20614504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:117-336
               
               
               Cow position:chr16:28879806-28880026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):163, 42

               
               
               Conread position:120-350
               
               
               Cow position:chr16:8448792-8448554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:122-350
               
               
               Cow position:chr16:6319052-6319303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:123-350
               
               
               Cow position:chr16:45677842-45678079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:125-342
               
               
               Cow position:chr16:56565453-56565689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:125-355
               
               
               Cow position:chr16:10772990-10773227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:130-350
               
               
               Cow position:chr16:41578088-41578327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:133-350
               
               
               Cow position:chr16:30136029-30135806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:135-350
               
               
               Cow position:chr16:36121113-36120882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:139-344
               
               
               Cow position:chr16:23955955-23955737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 94

               
               
               Conread position:142-350
               
               
               Cow position:chr16:9160966-9161184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:142-350
               
               
               Cow position:chr16:11082883-11083098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:145-338
               
               
               Cow position:chr16:53089463-53089262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 6

               
               
               Conread position:147-344
               
               
               Cow position:chr16:46452857-46452648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:151-350
               
               
               Cow position:chr16:42240941-42241148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:152-350
               
               
               Cow position:chr16:54226715-54226499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:173-351
               
               
               Cow position:chr16:8206150-8205982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):142, 14

               
               
               Conread position:177-348
               
               
               Cow position:chr16:13648256-13648426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 8

               
               
               Conread position:179-331
               
               
               Cow position:chr16:26030964-26030802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):54, 49

               
               
               Conread position:182-350
               
               
               Cow position:chr16:50931593-50931423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:186-344
               
               
               Cow position:chr16:43674802-43674969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:186-350
               
               
               Cow position:chr16:12501234-12501060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 128

               
               
               Conread position:186-350
               
               
               Cow position:chr16:30359133-30358963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:186-350
               
               
               Cow position:chr16:38091297-38091122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr16:40514553-40514381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:186-351
               
               
               Cow position:chr16:7619250-7619082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:186-352
               
               
               Cow position:chr16:42176572-42176748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:186-353
               
               
               Cow position:chr16:31426271-31426446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 47

               
               
               Conread position:187-347
               
               
               Cow position:chr16:9552989-9553155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:187-350
               
               
               Cow position:chr16:30305886-30305714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:188-350
               
               
               Cow position:chr16:17135657-17135825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 51

               
               
               Conread position:188-352
               
               
               Cow position:chr16:46430223-46430050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:200-350
               
               
               Cow position:chr16:12688167-12688012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:49-350
               
               
               Cow position:chr17:24580481-24580154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:51-279
               
               
               Cow position:chr17:24148997-24149244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 204

               
               
               Conread position:53-267
               
               
               Cow position:chr17:35311243-35311475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 197

               
               
               Conread position:53-285
               
               
               Cow position:chr17:44232897-44232647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):46, 248

               
               
               Conread position:55-182
               
               
               Cow position:chr17:36533485-36533611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:55-216
               
               
               Cow position:chr17:36268220-36268386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:55-248
               
               
               Cow position:chr17:21697556-21697768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-276
               
               
               Cow position:chr17:20358702-20358923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:55-280
               
               
               Cow position:chr17:9079362-9079143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):185, 39

               
               
               Conread position:55-280
               
               
               Cow position:chr17:18929252-18929042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:55-285
               
               
               Cow position:chr17:11278208-11277962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:55-290
               
               
               Cow position:chr17:25815433-25815673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:55-290
               
               
               Cow position:chr17:32366108-32366356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-314
               
               
               Cow position:chr17:38614780-38615064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-332
               
               
               Cow position:chr17:11101970-11101684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:55-334
               
               
               Cow position:chr17:18173981-18173704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:55-344
               
               
               Cow position:chr17:24973775-24974080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-347
               
               
               Cow position:chr17:1410419-1410100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-347
               
               
               Cow position:chr17:21628306-21628615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:55-347
               
               
               Cow position:chr17:29157242-29157554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):45, 60

               
               
               Conread position:55-349
               
               
               Cow position:chr17:20780334-20780655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-350
               
               
               Cow position:chr17:5896087-5895794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:55-350
               
               
               Cow position:chr17:9565133-9565441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 193

               
               
               Conread position:55-350
               
               
               Cow position:chr17:12220114-12219798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:55-350
               
               
               Cow position:chr17:12590987-12591315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr17:13143866-13143566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-350
               
               
               Cow position:chr17:20993215-20992901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 186

               
               
               Conread position:55-350
               
               
               Cow position:chr17:21973309-21972989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:55-350
               
               
               Cow position:chr17:36790963-36791267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:55-353
               
               
               Cow position:chr17:30718595-30718274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:55-366
               
               
               Cow position:chr17:8079141-8079471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:55-369
               
               
               Cow position:chr17:25796516-25796178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:56-149
               
               
               Cow position:chr17:15376148-15376244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-165
               
               
               Cow position:chr17:23680809-23680920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-170
               
               
               Cow position:chr17:20269427-20269544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-182
               
               
               Cow position:chr17:3182760-3182630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 98

               
               
               Conread position:56-182
               
               
               Cow position:chr17:4436406-4436278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:56-182
               
               
               Cow position:chr17:7648045-7648167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-182
               
               
               Cow position:chr17:12054544-12054676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr17:12216252-12216119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-182
               
               
               Cow position:chr17:16117603-16117468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr17:37163702-37163558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr17:23337188-23337051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:56-207
               
               
               Cow position:chr17:27679419-27679260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 138

               
               
               Conread position:56-208
               
               
               Cow position:chr17:21710330-21710490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:56-211
               
               
               Cow position:chr17:30999600-30999760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-214
               
               
               Cow position:chr17:11035746-11035920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:56-215
               
               
               Cow position:chr17:3258321-3258485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:56-216
               
               
               Cow position:chr17:3442843-3442677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-216
               
               
               Cow position:chr17:27162477-27162647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-220
               
               
               Cow position:chr17:32651441-32651622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-223
               
               
               Cow position:chr17:43527802-43527974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:56-224
               
               
               Cow position:chr17:25078171-25078010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:56-226
               
               
               Cow position:chr17:5041851-5041673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr17:5745418-5745245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:56-257
               
               
               Cow position:chr17:4472980-4472777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 57

               
               
               Conread position:56-268
               
               
               Cow position:chr17:32221337-32221118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-269
               
               
               Cow position:chr17:21312980-21312759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-270
               
               
               Cow position:chr17:3387119-3387324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:56-272
               
               
               Cow position:chr17:26224342-26224562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-273
               
               
               Cow position:chr17:5246720-5246948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-273
               
               
               Cow position:chr17:11056549-11056315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 213

               
               
               Conread position:56-273
               
               
               Cow position:chr17:42347396-42347170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-276
               
               
               Cow position:chr17:242461-242695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-276
               
               
               Cow position:chr17:1295746-1295514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-276
               
               
               Cow position:chr17:21031610-21031844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:56-278
               
               
               Cow position:chr17:12059266-12059033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:56-280
               
               
               Cow position:chr17:15333886-15333649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-286
               
               
               Cow position:chr17:2006526-2006760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:56-286
               
               
               Cow position:chr17:3471246-3471485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):70, 185

               
               
               Conread position:56-286
               
               
               Cow position:chr17:5898700-5898466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 165

               
               
               Conread position:56-286
               
               
               Cow position:chr17:15132989-15133211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-286
               
               
               Cow position:chr17:18860894-18860655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:56-286
               
               
               Cow position:chr17:26183047-26183294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 242

               
               
               Conread position:56-286
               
               
               Cow position:chr17:28539862-28540096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:56-286
               
               
               Cow position:chr17:34316884-34316648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-286
               
               
               Cow position:chr17:36746493-36746259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-287
               
               
               Cow position:chr17:27305983-27306227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:56-288
               
               
               Cow position:chr17:5733623-5733399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-288
               
               
               Cow position:chr17:20912722-20912957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-288
               
               
               Cow position:chr17:24549994-24550246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 196

               
               
               Conread position:56-288
               
               
               Cow position:chr17:25590411-25590165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-288
               
               
               Cow position:chr17:32279082-32278839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-288
               
               
               Cow position:chr17:34595764-34596009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-291
               
               
               Cow position:chr17:6624083-6624328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-292
               
               
               Cow position:chr17:27795473-27795720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-301
               
               
               Cow position:chr17:24761401-24761146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-314
               
               
               Cow position:chr17:25541988-25541713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-323
               
               
               Cow position:chr17:26818628-26818344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-333
               
               
               Cow position:chr17:923703-924003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-333
               
               
               Cow position:chr17:9778076-9778351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-336
               
               
               Cow position:chr17:20081954-20081672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):115, 34

               
               
               Conread position:56-337
               
               
               Cow position:chr17:21293220-21292916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:56-337
               
               
               Cow position:chr17:24818078-24818355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:56-338
               
               
               Cow position:chr17:3781870-3782172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:56-340
               
               
               Cow position:chr17:38646889-38647192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-342
               
               
               Cow position:chr17:21739059-21738741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-342
               
               
               Cow position:chr17:41892243-41891928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-344
               
               
               Cow position:chr17:6566296-6566616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:56-344
               
               
               Cow position:chr17:11171620-11171926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-345
               
               
               Cow position:chr17:7132630-7132304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 314

               
               
               Conread position:56-346
               
               
               Cow position:chr17:6423585-6423901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:56-346
               
               
               Cow position:chr17:11216058-11215757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:56-346
               
               
               Cow position:chr17:11664766-11664446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:56-346
               
               
               Cow position:chr17:22564008-22564321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:56-346
               
               
               Cow position:chr17:38363146-38362860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:56-347
               
               
               Cow position:chr17:3503411-3503719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-347
               
               
               Cow position:chr17:8690615-8690314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:56-347
               
               
               Cow position:chr17:20848355-20848660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:56-347
               
               
               Cow position:chr17:24587443-24587762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-348
               
               
               Cow position:chr17:27504951-27505234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:56-349
               
               
               Cow position:chr17:6936838-6936541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-350
               
               
               Cow position:chr17:1035776-1035457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr17:1063014-1063313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-350
               
               
               Cow position:chr17:1493330-1493008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-350
               
               
               Cow position:chr17:2034370-2034653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):118, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr17:4213581-4213884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr17:5006666-5006347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr17:5688523-5688232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 134

               
               
               Conread position:56-350
               
               
               Cow position:chr17:7697878-7698188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-350
               
               
               Cow position:chr17:7760638-7760332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr17:9117468-9117785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr17:9746343-9746653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:56-350
               
               
               Cow position:chr17:9911588-9911898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr17:11397491-11397805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:56-350
               
               
               Cow position:chr17:12289590-12289269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 141

               
               
               Conread position:56-350
               
               
               Cow position:chr17:12536643-12536324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr17:15664494-15664817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):68, 317

               
               
               Conread position:56-350
               
               
               Cow position:chr17:15684330-15684650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):40, 195

               
               
               Conread position:56-350
               
               
               Cow position:chr17:16371076-16371396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-350
               
               
               Cow position:chr17:17059264-17059564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-350
               
               
               Cow position:chr17:17060857-17060542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:56-350
               
               
               Cow position:chr17:18495685-18495379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-350
               
               
               Cow position:chr17:18592265-18592583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr17:19891440-19891764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 212

               
               
               Conread position:56-350
               
               
               Cow position:chr17:21004006-21003689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr17:21243962-21243649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr17:21335873-21335552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr17:21680593-21680919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 132

               
               
               Conread position:56-350
               
               
               Cow position:chr17:24077227-24077542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-350
               
               
               Cow position:chr17:25032647-25032341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr17:25189104-25189425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 315

               
               
               Conread position:56-350
               
               
               Cow position:chr17:25875237-25875535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 136

               
               
               Conread position:56-350
               
               
               Cow position:chr17:25901020-25901341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr17:26230764-26231094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 325

               
               
               Conread position:56-350
               
               
               Cow position:chr17:27429403-27429706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr17:29292542-29292241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:56-350
               
               
               Cow position:chr17:29715361-29715064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr17:30529711-30529405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:56-350
               
               
               Cow position:chr17:32027637-32027311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr17:32419293-32418975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:56-350
               
               
               Cow position:chr17:32554201-32553914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr17:33933912-33933602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):132, 45

               
               
               Conread position:56-350
               
               
               Cow position:chr17:37482254-37481931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 301

               
               
               Conread position:56-350
               
               
               Cow position:chr17:40312546-40312846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):41, 137

               
               
               Conread position:56-350
               
               
               Cow position:chr17:40771655-40771971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:56-350
               
               
               Cow position:chr17:41290193-41289902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:56-350
               
               
               Cow position:chr17:43717488-43717195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-351
               
               
               Cow position:chr17:5767739-5768047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:56-351
               
               
               Cow position:chr17:18109261-18108945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-351
               
               
               Cow position:chr17:18473001-18473305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-351
               
               
               Cow position:chr17:22806716-22806400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-351
               
               
               Cow position:chr17:25097287-25097597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:56-351
               
               
               Cow position:chr17:26084859-26085163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-352
               
               
               Cow position:chr17:10459111-10458789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-352
               
               
               Cow position:chr17:27142581-27142888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-352
               
               
               Cow position:chr17:33052688-33052994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-352
               
               
               Cow position:chr17:40741472-40741794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):45, 190

               
               
               Conread position:56-353
               
               
               Cow position:chr17:11381895-11381584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 196

               
               
               Conread position:56-353
               
               
               Cow position:chr17:20234052-20234354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:56-354
               
               
               Cow position:chr17:24824077-24824386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-355
               
               
               Cow position:chr17:1256679-1256355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:56-355
               
               
               Cow position:chr17:24553829-24554142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-355
               
               
               Cow position:chr17:30539422-30539124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:56-356
               
               
               Cow position:chr17:27047988-27048302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-363
               
               
               Cow position:chr17:8544131-8544459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-363
               
               
               Cow position:chr17:14848698-14848392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:56-364
               
               
               Cow position:chr17:908571-908897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:56-364
               
               
               Cow position:chr17:20157440-20157763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-364
               
               
               Cow position:chr17:21363232-21363538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 168

               
               
               Conread position:56-364
               
               
               Cow position:chr17:38832867-38833200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-365
               
               
               Cow position:chr17:11156668-11156338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-365
               
               
               Cow position:chr17:27697868-27697549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:56-365
               
               
               Cow position:chr17:41029778-41030095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-366
               
               
               Cow position:chr17:11281281-11280941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-366
               
               
               Cow position:chr17:30665097-30665430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-367
               
               
               Cow position:chr17:14033819-14033485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-367
               
               
               Cow position:chr17:17222167-17222498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-367
               
               
               Cow position:chr17:25999941-26000276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:56-367
               
               
               Cow position:chr17:36203665-36203329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 207

               
               
               Conread position:56-367
               
               
               Cow position:chr17:42419556-42419866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:56-368
               
               
               Cow position:chr17:11362008-11362333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:56-369
               
               
               Cow position:chr17:20800641-20800972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-371
               
               
               Cow position:chr17:37480168-37479841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:56-373
               
               
               Cow position:chr17:11296460-11296818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:57-271
               
               
               Cow position:chr17:966913-966694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-277
               
               
               Cow position:chr17:7047712-7047496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:57-327
               
               
               Cow position:chr17:18824616-18824904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:57-341
               
               
               Cow position:chr17:31231288-31230991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:57-346
               
               
               Cow position:chr17:13922301-13922626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:57-350
               
               
               Cow position:chr17:9853812-9854117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 111

               
               
               Conread position:57-350
               
               
               Cow position:chr17:24787195-24786883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr17:32989318-32989617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:57-350
               
               
               Cow position:chr17:32993788-32993483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 93

               
               
               Conread position:57-353
               
               
               Cow position:chr17:24773509-24773823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 140

               
               
               Conread position:57-356
               
               
               Cow position:chr17:3467595-3467899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:58-184
               
               
               Cow position:chr17:22781514-22781648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-285
               
               
               Cow position:chr17:34207993-34207750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:58-337
               
               
               Cow position:chr17:16448158-16448439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:58-350
               
               
               Cow position:chr17:17405965-17406276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-350
               
               
               Cow position:chr17:21755614-21755295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 189

               
               
               Conread position:58-350
               
               
               Cow position:chr17:29472302-29472606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:58-363
               
               
               Cow position:chr17:33275919-33275596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):39, 182

               
               
               Conread position:59-276
               
               
               Cow position:chr17:30734451-30734237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:59-286
               
               
               Cow position:chr17:20839733-20839500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 176

               
               
               Conread position:59-288
               
               
               Cow position:chr17:32950100-32950344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 208

               
               
               Conread position:59-347
               
               
               Cow position:chr17:20072247-20071961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:59-350
               
               
               Cow position:chr17:21495202-21495512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:60-276
               
               
               Cow position:chr17:27765110-27765330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:60-280
               
               
               Cow position:chr17:12447570-12447340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:60-336
               
               
               Cow position:chr17:14762293-14761995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 113

               
               
               Conread position:60-346
               
               
               Cow position:chr17:20932158-20932468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:60-350
               
               
               Cow position:chr17:5900207-5900510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:60-350
               
               
               Cow position:chr17:15103059-15102753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:60-350
               
               
               Cow position:chr17:15340908-15340611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:60-350
               
               
               Cow position:chr17:21115119-21114813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:60-367
               
               
               Cow position:chr17:29080390-29080695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:61-350
               
               
               Cow position:chr17:39485629-39485903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:62-344
               
               
               Cow position:chr17:22032863-22032560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:63-346
               
               
               Cow position:chr17:24883736-24883434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:63-352
               
               
               Cow position:chr17:30359310-30359601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:63-364
               
               
               Cow position:chr17:20126445-20126752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:64-350
               
               
               Cow position:chr17:12306563-12306257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:64-350
               
               
               Cow position:chr17:23246043-23246339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:65-351
               
               
               Cow position:chr17:17683064-17682769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):37, 48

               
               
               Conread position:66-364
               
               
               Cow position:chr17:979318-979012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:67-212
               
               
               Cow position:chr17:10037279-10037434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:67-286
               
               
               Cow position:chr17:43323922-43323699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:67-344
               
               
               Cow position:chr17:21959847-21959553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:69-277
               
               
               Cow position:chr17:1353234-1353455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:69-350
               
               
               Cow position:chr17:13244193-13243909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:70-286
               
               
               Cow position:chr17:25916731-25916961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 179

               
               
               Conread position:70-343
               
               
               Cow position:chr17:7142703-7142995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):29, 170

               
               
               Conread position:70-350
               
               
               Cow position:chr17:1562935-1562646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:70-350
               
               
               Cow position:chr17:27058714-27058417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:70-350
               
               
               Cow position:chr17:31585265-31585559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):29, 112

               
               
               Conread position:72-350
               
               
               Cow position:chr17:28467977-28468263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:73-251
               
               
               Cow position:chr17:20928752-20928944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:74-287
               
               
               Cow position:chr17:18146025-18146253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 159

               
               
               Conread position:76-350
               
               
               Cow position:chr17:39736030-39736315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:77-367
               
               
               Cow position:chr17:24559145-24559447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:80-187
               
               
               Cow position:chr17:25334300-25334406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:81-276
               
               
               Cow position:chr17:5382136-5381937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:81-287
               
               
               Cow position:chr17:3060844-3060637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 10

               
               
               Conread position:81-350
               
               
               Cow position:chr17:267734-267464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:81-350
               
               
               Cow position:chr17:31037530-31037236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:81-355
               
               
               Cow position:chr17:30713196-30713489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:85-350
               
               
               Cow position:chr17:17410147-17410433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:85-350
               
               
               Cow position:chr17:20874249-20874537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:87-346
               
               
               Cow position:chr17:25501969-25502247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:89-306
               
               
               Cow position:chr17:33271829-33271587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:90-286
               
               
               Cow position:chr17:21323148-21323342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:91-288
               
               
               Cow position:chr17:5144306-5144094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 203

               
               
               Conread position:92-350
               
               
               Cow position:chr17:10432110-10431833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:96-348
               
               
               Cow position:chr17:6328978-6329253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 271

               
               
               Conread position:96-350
               
               
               Cow position:chr17:14003688-14003965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:98-350
               
               
               Cow position:chr17:14026052-14025770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:98-364
               
               
               Cow position:chr17:39857261-39857542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 250

               
               
               Conread position:100-266
               
               
               Cow position:chr17:5830264-5830099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:100-276
               
               
               Cow position:chr17:11921412-11921217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:100-288
               
               
               Cow position:chr17:32280539-32280733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:100-350
               
               
               Cow position:chr17:6318987-6318726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:100-350
               
               
               Cow position:chr17:30728391-30728645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:100-350
               
               
               Cow position:chr17:40673256-40673510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:100-353
               
               
               Cow position:chr17:32018005-32017748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:101-286
               
               
               Cow position:chr17:24752441-24752253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:101-351
               
               
               Cow position:chr17:27184069-27183803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:103-350
               
               
               Cow position:chr17:6848678-6848935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:103-364
               
               
               Cow position:chr17:32138541-32138268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:104-345
               
               
               Cow position:chr17:553083-552834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):51, 128

               
               
               Conread position:104-348
               
               
               Cow position:chr17:20884397-20884661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:104-350
               
               
               Cow position:chr17:32348948-32349208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:108-350
               
               
               Cow position:chr17:7803293-7803035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 57

               
               
               Conread position:109-350
               
               
               Cow position:chr17:33658187-33657928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:112-340
               
               
               Cow position:chr17:31856545-31856804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:113-364
               
               
               Cow position:chr17:25616145-25616404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:114-286
               
               
               Cow position:chr17:7654568-7654386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:116-343
               
               
               Cow position:chr17:23798168-23798416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:116-350
               
               
               Cow position:chr17:34751514-34751265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:117-350
               
               
               Cow position:chr17:36864520-36864771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):6, 42

               
               
               Conread position:123-350
               
               
               Cow position:chr17:11215333-11215091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:123-350
               
               
               Cow position:chr17:11832223-11831974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:123-350
               
               
               Cow position:chr17:40851879-40852113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:123-367
               
               
               Cow position:chr17:21758250-21757984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:125-350
               
               
               Cow position:chr17:21325231-21325473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:126-350
               
               
               Cow position:chr17:18920451-18920230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:128-350
               
               
               Cow position:chr17:11912596-11912362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:132-350
               
               
               Cow position:chr17:27203139-27202905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:135-346
               
               
               Cow position:chr17:21489716-21489488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:136-352
               
               
               Cow position:chr17:21922713-21922491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):146, 47

               
               
               Conread position:139-350
               
               
               Cow position:chr17:2275386-2275611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:145-346
               
               
               Cow position:chr17:38263568-38263353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 6

               
               
               Conread position:151-350
               
               
               Cow position:chr17:22057099-22056887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:186-341
               
               
               Cow position:chr17:9770479-9770635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 90

               
               
               Conread position:186-346
               
               
               Cow position:chr17:25126320-25126487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:186-347
               
               
               Cow position:chr17:7590491-7590325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:186-350
               
               
               Cow position:chr17:20810521-20810349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:188-350
               
               
               Cow position:chr17:28814529-28814353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 173

               
               
               Conread position:199-342
               
               
               Cow position:chr17:7851068-7851220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:200-350
               
               
               Cow position:chr17:34836152-34836311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):87, 153

               
               
               Conread position:233-350
               
               
               Cow position:chr17:27440190-27440314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:24-350
               
               
               Cow position:chr18:43020674-43020337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):26, 133

               
               
               Conread position:53-343
               
               
               Cow position:chr18:37382348-37382033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:54-191
               
               
               Cow position:chr18:16184678-16184540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:55-165
               
               
               Cow position:chr18:19831048-19831157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:55-181
               
               
               Cow position:chr18:13507577-13507452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:55-214
               
               
               Cow position:chr18:33272696-33272856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:55-245
               
               
               Cow position:chr18:2569552-2569743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:55-250
               
               
               Cow position:chr18:19159214-19159015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:55-266
               
               
               Cow position:chr18:35076137-35076366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:55-266
               
               
               Cow position:chr18:48290687-48290466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-273
               
               
               Cow position:chr18:11166730-11166961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):44, 192

               
               
               Conread position:55-280
               
               
               Cow position:chr18:4926825-4927056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:55-281
               
               
               Cow position:chr18:11183692-11183930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:55-344
               
               
               Cow position:chr18:3044181-3044503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:55-350
               
               
               Cow position:chr18:33158714-33159009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):46, 122

               
               
               Conread position:55-350
               
               
               Cow position:chr18:55692572-55692882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:55-352
               
               
               Cow position:chr18:4666462-4666148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:55-354
               
               
               Cow position:chr18:28768117-28768432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:56-182
               
               
               Cow position:chr18:23447330-23447200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr18:49665400-49665277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:56-182
               
               
               Cow position:chr18:51178994-51178864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr18:56192838-56192699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-214
               
               
               Cow position:chr18:4625647-4625819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-215
               
               
               Cow position:chr18:18976836-18977005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-220
               
               
               Cow position:chr18:23808121-23807944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr18:36445184-36445374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:56-228
               
               
               Cow position:chr18:49543230-49543411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-249
               
               
               Cow position:chr18:19977228-19977021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-259
               
               
               Cow position:chr18:30673889-30673675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-260
               
               
               Cow position:chr18:4316059-4316279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 167

               
               
               Conread position:56-260
               
               
               Cow position:chr18:7058982-7059189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-268
               
               
               Cow position:chr18:16847450-16847670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:56-268
               
               
               Cow position:chr18:41270842-41271061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-269
               
               
               Cow position:chr18:19761450-19761675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 217

               
               
               Conread position:56-269
               
               
               Cow position:chr18:47314542-47314304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-269
               
               
               Cow position:chr18:47868207-47868441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-270
               
               
               Cow position:chr18:47517457-47517239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-275
               
               
               Cow position:chr18:20998866-20998641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:56-276
               
               
               Cow position:chr18:3098562-3098338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:56-276
               
               
               Cow position:chr18:35582350-35582114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-277
               
               
               Cow position:chr18:56361849-56361619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-278
               
               
               Cow position:chr18:54574561-54574334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:56-279
               
               
               Cow position:chr18:81508-81733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-280
               
               
               Cow position:chr18:14048465-14048696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:56-280
               
               
               Cow position:chr18:24022132-24022375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:56-280
               
               
               Cow position:chr18:33606384-33606618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-280
               
               
               Cow position:chr18:56150904-56150656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 104

               
               
               Conread position:56-281
               
               
               Cow position:chr18:1405565-1405799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:56-281
               
               
               Cow position:chr18:34621615-34621372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-282
               
               
               Cow position:chr18:26586912-26586670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 192

               
               
               Conread position:56-286
               
               
               Cow position:chr18:601421-601184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-286
               
               
               Cow position:chr18:4648983-4648755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:56-286
               
               
               Cow position:chr18:20271268-20271027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:56-286
               
               
               Cow position:chr18:26937484-26937713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:56-286
               
               
               Cow position:chr18:36097952-36098204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:56-286
               
               
               Cow position:chr18:46437000-46436772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:56-286
               
               
               Cow position:chr18:47872856-47873074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:56-286
               
               
               Cow position:chr18:51656301-51656050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 198

               
               
               Conread position:56-288
               
               
               Cow position:chr18:4668740-4668504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 168

               
               
               Conread position:56-288
               
               
               Cow position:chr18:26355281-26355033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 185

               
               
               Conread position:56-291
               
               
               Cow position:chr18:21205118-21205362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:56-295
               
               
               Cow position:chr18:7487004-7487252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 115

               
               
               Conread position:56-299
               
               
               Cow position:chr18:16417945-16417691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:56-302
               
               
               Cow position:chr18:2608977-2608716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr18:17649984-17649708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:56-320
               
               
               Cow position:chr18:30248376-30248102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:56-320
               
               
               Cow position:chr18:39002042-39001770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):127, 25

               
               
               Conread position:56-323
               
               
               Cow position:chr18:11811731-11811988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:56-325
               
               
               Cow position:chr18:5487003-5487284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-326
               
               
               Cow position:chr18:29958395-29958121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:56-327
               
               
               Cow position:chr18:14815583-14815304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 145

               
               
               Conread position:56-332
               
               
               Cow position:chr18:12776021-12775735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-336
               
               
               Cow position:chr18:55498814-55499124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-337
               
               
               Cow position:chr18:6610105-6609803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):68, 184

               
               
               Conread position:56-337
               
               
               Cow position:chr18:16726398-16726702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-342
               
               
               Cow position:chr18:36458686-36458990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-343
               
               
               Cow position:chr18:13359814-13360114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:56-343
               
               
               Cow position:chr18:19849999-19849697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-343
               
               
               Cow position:chr18:50382009-50382308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:56-344
               
               
               Cow position:chr18:2270752-2270455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-344
               
               
               Cow position:chr18:7649746-7650046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:56-344
               
               
               Cow position:chr18:15025431-15025736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 71

               
               
               Conread position:56-344
               
               
               Cow position:chr18:38985439-38985760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-345
               
               
               Cow position:chr18:23766664-23766347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:56-345
               
               
               Cow position:chr18:29796673-29796366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:56-345
               
               
               Cow position:chr18:55589723-55589430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:56-346
               
               
               Cow position:chr18:13507980-13507677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:56-346
               
               
               Cow position:chr18:42747347-42747651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:56-346
               
               
               Cow position:chr18:45904140-45903834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-347
               
               
               Cow position:chr18:23476922-23476623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:56-347
               
               
               Cow position:chr18:51211933-51212247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:56-349
               
               
               Cow position:chr18:10575860-10576177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-349
               
               
               Cow position:chr18:22411865-22411546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 307

               
               
               Conread position:56-350
               
               
               Cow position:chr18:3158850-3158528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr18:3166735-3166422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr18:3180172-3180477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr18:4182439-4182121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:56-350
               
               
               Cow position:chr18:5766181-5766480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr18:7359486-7359811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 198

               
               
               Conread position:56-350
               
               
               Cow position:chr18:7952398-7952704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 139

               
               
               Conread position:56-350
               
               
               Cow position:chr18:7955894-7956214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:56-350
               
               
               Cow position:chr18:9010483-9010775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr18:10322552-10322873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:56-350
               
               
               Cow position:chr18:10656197-10656506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr18:11377116-11377431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:56-350
               
               
               Cow position:chr18:11684740-11685049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr18:12058769-12059064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:56-350
               
               
               Cow position:chr18:17005002-17005326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):44, 319

               
               
               Conread position:56-350
               
               
               Cow position:chr18:19193598-19193298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr18:20641733-20641429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr18:21195586-21195268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr18:21266260-21266573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr18:22056102-22055804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):153, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr18:22121130-22120819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr18:22214239-22214555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:56-350
               
               
               Cow position:chr18:24508453-24508164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 123

               
               
               Conread position:56-350
               
               
               Cow position:chr18:25282803-25282487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr18:25647498-25647181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr18:26938735-26939050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr18:28924079-28923780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:56-350
               
               
               Cow position:chr18:30794186-30794493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr18:33299649-33299971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:56-350
               
               
               Cow position:chr18:33793460-33793756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:56-350
               
               
               Cow position:chr18:38686844-38687147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr18:39662537-39662843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:56-350
               
               
               Cow position:chr18:45104695-45104371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 146

               
               
               Conread position:56-350
               
               
               Cow position:chr18:45570773-45571079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr18:46048513-46048819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:56-350
               
               
               Cow position:chr18:46453126-46452811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr18:47183532-47183226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr18:48453445-48453740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr18:51691716-51691396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-350
               
               
               Cow position:chr18:51712957-51712651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 128

               
               
               Conread position:56-350
               
               
               Cow position:chr18:56159217-56159527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:56-350
               
               
               Cow position:chr18:56172268-56171948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:56-350
               
               
               Cow position:chr18:56181703-56181389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:56-351
               
               
               Cow position:chr18:4758276-4757966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-351
               
               
               Cow position:chr18:9974574-9974260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:56-351
               
               
               Cow position:chr18:21175934-21176255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:56-351
               
               
               Cow position:chr18:38606988-38607290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:56-351
               
               
               Cow position:chr18:43284006-43283690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-352
               
               
               Cow position:chr18:4381046-4381361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:56-352
               
               
               Cow position:chr18:4540124-4539813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-352
               
               
               Cow position:chr18:16227313-16227625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-352
               
               
               Cow position:chr18:31672755-31672444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-352
               
               
               Cow position:chr18:55000990-55000673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-353
               
               
               Cow position:chr18:6881586-6881285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:56-353
               
               
               Cow position:chr18:7966014-7966311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:56-353
               
               
               Cow position:chr18:19387333-19387641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 235

               
               
               Conread position:56-353
               
               
               Cow position:chr18:28101378-28101702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-355
               
               
               Cow position:chr18:11691660-11691337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-356
               
               
               Cow position:chr18:15881105-15880766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:56-361
               
               
               Cow position:chr18:2592421-2592090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-363
               
               
               Cow position:chr18:18919201-18918880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:56-364
               
               
               Cow position:chr18:3115211-3115536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 183

               
               
               Conread position:56-364
               
               
               Cow position:chr18:11867099-11867422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):127, 43

               
               
               Conread position:56-364
               
               
               Cow position:chr18:20174378-20174048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-364
               
               
               Cow position:chr18:21768379-21768696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-364
               
               
               Cow position:chr18:32883053-32883384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-364
               
               
               Cow position:chr18:44262374-44262713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-364
               
               
               Cow position:chr18:52637776-52637447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:56-366
               
               
               Cow position:chr18:28658162-28657826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-366
               
               
               Cow position:chr18:55789240-55788913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:56-367
               
               
               Cow position:chr18:4490122-4489822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-367
               
               
               Cow position:chr18:12023881-12023554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:56-370
               
               
               Cow position:chr18:9365664-9366009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:57-163
               
               
               Cow position:chr18:49660286-49660178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-177
               
               
               Cow position:chr18:52402765-52402640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-203
               
               
               Cow position:chr18:5711914-5711764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 141

               
               
               Conread position:57-286
               
               
               Cow position:chr18:20482121-20481890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:57-298
               
               
               Cow position:chr18:268058-267805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:57-337
               
               
               Cow position:chr18:51443678-51443385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:57-343
               
               
               Cow position:chr18:16044401-16044091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):58, 112

               
               
               Conread position:57-344
               
               
               Cow position:chr18:11322345-11322657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 193

               
               
               Conread position:57-345
               
               
               Cow position:chr18:38344553-38344868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:57-349
               
               
               Cow position:chr18:47525159-47525474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:57-350
               
               
               Cow position:chr18:48713306-48713618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:57-350
               
               
               Cow position:chr18:50082492-50082190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:57-363
               
               
               Cow position:chr18:3422473-3422777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:57-367
               
               
               Cow position:chr18:19645928-19646258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:58-213
               
               
               Cow position:chr18:4624676-4624509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:58-218
               
               
               Cow position:chr18:9818590-9818765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-239
               
               
               Cow position:chr18:24342380-24342568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:58-279
               
               
               Cow position:chr18:39709644-39709871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-280
               
               
               Cow position:chr18:35636595-35636359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 7

               
               
               Conread position:58-280
               
               
               Cow position:chr18:52632650-52632420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:58-288
               
               
               Cow position:chr18:54658056-54658306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:58-337
               
               
               Cow position:chr18:40758969-40759261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:58-345
               
               
               Cow position:chr18:33157575-33157879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:58-345
               
               
               Cow position:chr18:44484005-44483711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-350
               
               
               Cow position:chr18:9089456-9089766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):52, 73

               
               
               Conread position:58-350
               
               
               Cow position:chr18:19273351-19273030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:58-350
               
               
               Cow position:chr18:49100614-49100301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:59-266
               
               
               Cow position:chr18:4529275-4529472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):172, 44

               
               
               Conread position:59-350
               
               
               Cow position:chr18:51406149-51405845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):91, 40

               
               
               Conread position:59-355
               
               
               Cow position:chr18:15172787-15173085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:60-252
               
               
               Cow position:chr18:26286667-26286871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:60-286
               
               
               Cow position:chr18:29371624-29371859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 181

               
               
               Conread position:60-347
               
               
               Cow position:chr18:37023801-37023486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:60-350
               
               
               Cow position:chr18:2849505-2849202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 116

               
               
               Conread position:61-243
               
               
               Cow position:chr18:24636271-24636453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:61-350
               
               
               Cow position:chr18:56165740-56166048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:62-287
               
               
               Cow position:chr18:24946055-24945811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:62-350
               
               
               Cow position:chr18:4796727-4797032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:62-350
               
               
               Cow position:chr18:17391216-17390927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:64-350
               
               
               Cow position:chr18:4673074-4673371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:65-288
               
               
               Cow position:chr18:42966615-42966858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 231

               
               
               Conread position:65-350
               
               
               Cow position:chr18:247923-247628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 100

               
               
               Conread position:69-305
               
               
               Cow position:chr18:15340675-15340434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:70-286
               
               
               Cow position:chr18:2480416-2480648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 159

               
               
               Conread position:70-332
               
               
               Cow position:chr18:42455259-42454973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:70-346
               
               
               Cow position:chr18:48829021-48828712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):24, 211

               
               
               Conread position:70-350
               
               
               Cow position:chr18:25984807-25984509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:70-352
               
               
               Cow position:chr18:18962074-18961767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:70-364
               
               
               Cow position:chr18:35012540-35012236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:70-367
               
               
               Cow position:chr18:4496122-4495803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):31, 173

               
               
               Conread position:71-350
               
               
               Cow position:chr18:10977444-10977144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:71-350
               
               
               Cow position:chr18:42479825-42479519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:72-286
               
               
               Cow position:chr18:219100-219332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):27, 229

               
               
               Conread position:73-367
               
               
               Cow position:chr18:5995236-5995554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:76-272
               
               
               Cow position:chr18:1582511-1582291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:77-350
               
               
               Cow position:chr18:51392873-51392577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 293

               
               
               Conread position:79-264
               
               
               Cow position:chr18:53962458-53962663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:80-277
               
               
               Cow position:chr18:14085237-14085448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:80-350
               
               
               Cow position:chr18:2619421-2619146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:85-350
               
               
               Cow position:chr18:21102988-21102710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:87-351
               
               
               Cow position:chr18:18369578-18369293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:96-353
               
               
               Cow position:chr18:30341383-30341114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 47

               
               
               Conread position:98-288
               
               
               Cow position:chr18:7108920-7109125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:98-341
               
               
               Cow position:chr18:3211663-3211936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:98-364
               
               
               Cow position:chr18:36230927-36230644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:100-271
               
               
               Cow position:chr18:18868544-18868733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:100-286
               
               
               Cow position:chr18:54056359-54056542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 60

               
               
               Conread position:100-340
               
               
               Cow position:chr18:36184104-36183849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 140

               
               
               Conread position:102-350
               
               
               Cow position:chr18:7415230-7414961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 144

               
               
               Conread position:106-350
               
               
               Cow position:chr18:5072608-5072343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 54

               
               
               Conread position:109-286
               
               
               Cow position:chr18:27637016-27637204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:109-350
               
               
               Cow position:chr18:19896650-19896384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:110-364
               
               
               Cow position:chr18:9066510-9066784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:111-286
               
               
               Cow position:chr18:10861625-10861437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:115-350
               
               
               Cow position:chr18:16686525-16686268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:120-344
               
               
               Cow position:chr18:36201806-36201568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:120-350
               
               
               Cow position:chr18:51643550-51643300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):31, 242

               
               
               Conread position:123-346
               
               
               Cow position:chr18:28930807-28930573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:123-355
               
               
               Cow position:chr18:43555702-43555452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:128-350
               
               
               Cow position:chr18:50974468-50974227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:128-351
               
               
               Cow position:chr18:51676268-51676022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:130-355
               
               
               Cow position:chr18:30586390-30586153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:131-350
               
               
               Cow position:chr18:48633623-48633843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:153-343
               
               
               Cow position:chr18:5078915-5078713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:179-350
               
               
               Cow position:chr18:5711762-5711586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):103, 48

               
               
               Conread position:186-286
               
               
               Cow position:chr18:14779412-14779313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:186-344
               
               
               Cow position:chr18:23162787-23162947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):103, 42

               
               
               Conread position:186-350
               
               
               Cow position:chr18:56044451-56044620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:186-351
               
               
               Cow position:chr18:1732967-1732805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 38

               
               
               Conread position:186-363
               
               
               Cow position:chr18:19883424-19883613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:186-364
               
               
               Cow position:chr18:47967029-47966845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:186-387
               
               
               Cow position:chr18:53642858-53642646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:187-337
               
               
               Cow position:chr18:49015023-49015179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:200-352
               
               
               Cow position:chr18:56301798-56301961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:203-350
               
               
               Cow position:chr18:9176812-9176966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-350
               
               
               Cow position:chr19:42563883-42564233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 345

               
               
               Conread position:49-274
               
               
               Cow position:chr19:30276713-30276938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:49-345
               
               
               Cow position:chr19:44489859-44490178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:52-182
               
               
               Cow position:chr19:42762858-42762986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:55-276
               
               
               Cow position:chr19:38596387-38596623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):44, 200

               
               
               Conread position:55-286
               
               
               Cow position:chr19:10171773-10172019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 221

               
               
               Conread position:55-288
               
               
               Cow position:chr19:38638029-38637801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:55-344
               
               
               Cow position:chr19:43440935-43441251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:55-347
               
               
               Cow position:chr19:40449801-40450104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:55-349
               
               
               Cow position:chr19:22799311-22798990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 169

               
               
               Conread position:55-350
               
               
               Cow position:chr19:5656338-5656035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr19:15863266-15862961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:55-350
               
               
               Cow position:chr19:20622430-20622742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:55-350
               
               
               Cow position:chr19:31846770-31846461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:55-350
               
               
               Cow position:chr19:35540077-35540388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:55-353
               
               
               Cow position:chr19:46159829-46160116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-364
               
               
               Cow position:chr19:35762484-35762145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:55-366
               
               
               Cow position:chr19:16694276-16693924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:56-166
               
               
               Cow position:chr19:14573146-14573263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr19:20433005-20432874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr19:4537640-4537514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:56-182
               
               
               Cow position:chr19:24956669-24956542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-182
               
               
               Cow position:chr19:25053900-25053770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr19:46693926-46694053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-200
               
               
               Cow position:chr19:44125421-44125565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):100, 40

               
               
               Conread position:56-204
               
               
               Cow position:chr19:25835583-25835431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-207
               
               
               Cow position:chr19:39794730-39794888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 145

               
               
               Conread position:56-212
               
               
               Cow position:chr19:7492213-7492371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-212
               
               
               Cow position:chr19:19431006-19431172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-212
               
               
               Cow position:chr19:28038848-28038695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:56-216
               
               
               Cow position:chr19:54294810-54294642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 60

               
               
               Conread position:56-223
               
               
               Cow position:chr19:8209616-8209435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-248
               
               
               Cow position:chr19:37562219-37562026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):33, 27

               
               
               Conread position:56-250
               
               
               Cow position:chr19:33306869-33307080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-261
               
               
               Cow position:chr19:31762797-31763017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-266
               
               
               Cow position:chr19:2138332-2138109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-266
               
               
               Cow position:chr19:37502894-37502684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-273
               
               
               Cow position:chr19:53645642-53645423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 157

               
               
               Conread position:56-274
               
               
               Cow position:chr19:13390693-13390917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-276
               
               
               Cow position:chr19:4340134-4339911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 158

               
               
               Conread position:56-276
               
               
               Cow position:chr19:10286681-10286901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-276
               
               
               Cow position:chr19:19561279-19561521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-276
               
               
               Cow position:chr19:33932368-33932143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:56-278
               
               
               Cow position:chr19:36176518-36176756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-280
               
               
               Cow position:chr19:20693270-20693509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-280
               
               
               Cow position:chr19:21092552-21092778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:56-280
               
               
               Cow position:chr19:27180486-27180254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:56-285
               
               
               Cow position:chr19:25851715-25851475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-285
               
               
               Cow position:chr19:25852059-25851819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-285
               
               
               Cow position:chr19:25865151-25864911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-286
               
               
               Cow position:chr19:7543195-7543428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:56-286
               
               
               Cow position:chr19:8212064-8211822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 222

               
               
               Conread position:56-286
               
               
               Cow position:chr19:8839376-8839621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-286
               
               
               Cow position:chr19:29070934-29070705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:56-286
               
               
               Cow position:chr19:32450851-32451099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-286
               
               
               Cow position:chr19:35380776-35380538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:56-286
               
               
               Cow position:chr19:53372123-53371884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-287
               
               
               Cow position:chr19:1713370-1713124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-287
               
               
               Cow position:chr19:23005592-23005340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-287
               
               
               Cow position:chr19:33912860-33912608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-287
               
               
               Cow position:chr19:39245673-39245916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 187

               
               
               Conread position:56-288
               
               
               Cow position:chr19:39697844-39698081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-288
               
               
               Cow position:chr19:47187279-47187038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-288
               
               
               Cow position:chr19:47727798-47727556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:56-289
               
               
               Cow position:chr19:6417372-6417614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:56-290
               
               
               Cow position:chr19:6949688-6949924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-290
               
               
               Cow position:chr19:26086968-26087214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 186

               
               
               Conread position:56-292
               
               
               Cow position:chr19:44757833-44757599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):134, 37

               
               
               Conread position:56-299
               
               
               Cow position:chr19:27104519-27104759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:56-300
               
               
               Cow position:chr19:46918614-46918880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):44, 194

               
               
               Conread position:56-301
               
               
               Cow position:chr19:373416-373164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-305
               
               
               Cow position:chr19:5433788-5433523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 198

               
               
               Conread position:56-306
               
               
               Cow position:chr19:23785962-23786235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-314
               
               
               Cow position:chr19:33823090-33823371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:56-314
               
               
               Cow position:chr19:39104238-39103960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 157

               
               
               Conread position:56-323
               
               
               Cow position:chr19:31825242-31824951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-328
               
               
               Cow position:chr19:2589284-2589567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-332
               
               
               Cow position:chr19:42240518-42240224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-336
               
               
               Cow position:chr19:43418191-43418483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-336
               
               
               Cow position:chr19:54942748-54943044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 175

               
               
               Conread position:56-337
               
               
               Cow position:chr19:51401235-51400938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-339
               
               
               Cow position:chr19:24358451-24358165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-340
               
               
               Cow position:chr19:13267410-13267119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:56-341
               
               
               Cow position:chr19:14347785-14348093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:56-342
               
               
               Cow position:chr19:2734225-2734531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-342
               
               
               Cow position:chr19:36722097-36722390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-343
               
               
               Cow position:chr19:19661815-19662125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-344
               
               
               Cow position:chr19:386917-387217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:56-344
               
               
               Cow position:chr19:20935527-20935840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:56-344
               
               
               Cow position:chr19:21378692-21378386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:56-344
               
               
               Cow position:chr19:23222408-23222713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-345
               
               
               Cow position:chr19:35741931-35742246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-345
               
               
               Cow position:chr19:42205707-42206007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:56-345
               
               
               Cow position:chr19:53657672-53657975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):40, 288

               
               
               Conread position:56-346
               
               
               Cow position:chr19:1152995-1153291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-346
               
               
               Cow position:chr19:7473472-7473783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):65, 147

               
               
               Conread position:56-346
               
               
               Cow position:chr19:11191849-11191535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-346
               
               
               Cow position:chr19:38340203-38339896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-347
               
               
               Cow position:chr19:8332067-8332386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:56-347
               
               
               Cow position:chr19:36461754-36461443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr19:268127-268442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:56-350
               
               
               Cow position:chr19:1664421-1664101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr19:2208003-2207704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:56-350
               
               
               Cow position:chr19:2577349-2577648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr19:3812242-3811930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr19:4502993-4503309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr19:4587947-4587649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr19:5913177-5912872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr19:6516033-6516356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):43, 237

               
               
               Conread position:56-350
               
               
               Cow position:chr19:6531664-6531974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr19:6688232-6687915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr19:8128089-8128394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:56-350
               
               
               Cow position:chr19:8375528-8375213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr19:9583088-9583377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:56-350
               
               
               Cow position:chr19:10080842-10081164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr19:10186273-10186591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr19:10213444-10213761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr19:10545935-10545615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-350
               
               
               Cow position:chr19:10755084-10755390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-350
               
               
               Cow position:chr19:12036731-12036417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr19:12601585-12601894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):111, 42

               
               
               Conread position:56-350
               
               
               Cow position:chr19:15887550-15887231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr19:17273947-17273651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr19:18786552-18786233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr19:20671128-20670817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr19:23304721-23304401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:56-350
               
               
               Cow position:chr19:26976275-26975978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):134, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr19:27348489-27348204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr19:27612395-27612080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:56-350
               
               
               Cow position:chr19:29368172-29368485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr19:29627601-29627301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):115, 66

               
               
               Conread position:56-350
               
               
               Cow position:chr19:30232502-30232800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr19:30471564-30471265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr19:30533714-30534017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 125

               
               
               Conread position:56-350
               
               
               Cow position:chr19:31595072-31595390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr19:32457415-32457731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:56-350
               
               
               Cow position:chr19:33468797-33469109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):43, 306

               
               
               Conread position:56-350
               
               
               Cow position:chr19:35018474-35018156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr19:36125357-36125675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr19:36245713-36245405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-350
               
               
               Cow position:chr19:36845021-36845338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr19:39057018-39057334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:56-350
               
               
               Cow position:chr19:39360913-39361232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:56-350
               
               
               Cow position:chr19:41584748-41585058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr19:41817822-41817528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr19:42694761-42695084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 308

               
               
               Conread position:56-350
               
               
               Cow position:chr19:43431548-43431239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr19:47118726-47118406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-350
               
               
               Cow position:chr19:48474917-48475217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr19:48722798-48723112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 212

               
               
               Conread position:56-350
               
               
               Cow position:chr19:50562457-50562770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr19:53543107-53542810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):106, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr19:55590006-55590320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 139

               
               
               Conread position:56-351
               
               
               Cow position:chr19:13129655-13129960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:56-351
               
               
               Cow position:chr19:39751254-39751567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-352
               
               
               Cow position:chr19:21198900-21199230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-352
               
               
               Cow position:chr19:52381305-52381612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):68, 21

               
               
               Conread position:56-353
               
               
               Cow position:chr19:5185477-5185163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-353
               
               
               Cow position:chr19:34620255-34619937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-353
               
               
               Cow position:chr19:38842782-38842468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 308

               
               
               Conread position:56-355
               
               
               Cow position:chr19:22765390-22765715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-361
               
               
               Cow position:chr19:41024002-41024325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-361
               
               
               Cow position:chr19:53840288-53840617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):19, 179

               
               
               Conread position:56-364
               
               
               Cow position:chr19:9542124-9541796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-364
               
               
               Cow position:chr19:24062070-24062382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-364
               
               
               Cow position:chr19:24144790-24145120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-364
               
               
               Cow position:chr19:43058308-43058629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:56-366
               
               
               Cow position:chr19:1968531-1968212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-366
               
               
               Cow position:chr19:25652989-25652655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:56-366
               
               
               Cow position:chr19:26706432-26706110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-366
               
               
               Cow position:chr19:51185200-51185527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-367
               
               
               Cow position:chr19:15437882-15438207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-367
               
               
               Cow position:chr19:53791657-53791325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-369
               
               
               Cow position:chr19:14592823-14593164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-369
               
               
               Cow position:chr19:41945962-41946291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-385
               
               
               Cow position:chr19:51621410-51621058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:57-287
               
               
               Cow position:chr19:4445846-4445605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:57-330
               
               
               Cow position:chr19:34425362-34425648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:57-346
               
               
               Cow position:chr19:990636-990329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:57-346
               
               
               Cow position:chr19:20661641-20661330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:57-346
               
               
               Cow position:chr19:22134371-22134067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:57-347
               
               
               Cow position:chr19:5116093-5115793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:57-366
               
               
               Cow position:chr19:25727103-25726776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:58-214
               
               
               Cow position:chr19:53037379-53037208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:58-288
               
               
               Cow position:chr19:21335841-21335588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 200

               
               
               Conread position:58-334
               
               
               Cow position:chr19:35808345-35808080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 41

               
               
               Conread position:58-350
               
               
               Cow position:chr19:30886168-30886484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:58-350
               
               
               Cow position:chr19:43035017-43035328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 190

               
               
               Conread position:58-352
               
               
               Cow position:chr19:31873892-31874195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:59-182
               
               
               Cow position:chr19:34911660-34911790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:59-225
               
               
               Cow position:chr19:48409291-48409466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:59-340
               
               
               Cow position:chr19:8864525-8864820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):40, 181

               
               
               Conread position:59-346
               
               
               Cow position:chr19:56150292-56149978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:59-351
               
               
               Cow position:chr19:46454626-46454937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:59-364
               
               
               Cow position:chr19:51231044-51230719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:60-182
               
               
               Cow position:chr19:25025715-25025592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:60-350
               
               
               Cow position:chr19:17795672-17795985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:60-350
               
               
               Cow position:chr19:33903645-33903337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:60-350
               
               
               Cow position:chr19:40051609-40051304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:60-351
               
               
               Cow position:chr19:52479781-52480075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:60-364
               
               
               Cow position:chr19:7637459-7637131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:61-269
               
               
               Cow position:chr19:10786581-10786370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:62-314
               
               
               Cow position:chr19:22039550-22039826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:62-351
               
               
               Cow position:chr19:22154082-22153760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 160

               
               
               Conread position:63-330
               
               
               Cow position:chr19:6079579-6079292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:63-337
               
               
               Cow position:chr19:24137038-24137338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:64-345
               
               
               Cow position:chr19:13316631-13316337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:65-288
               
               
               Cow position:chr19:4599866-4600081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):32, 26

               
               
               Conread position:66-228
               
               
               Cow position:chr19:37110009-37109843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:67-325
               
               
               Cow position:chr19:36097005-36097285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 170

               
               
               Conread position:70-350
               
               
               Cow position:chr19:33290269-33290572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 163

               
               
               Conread position:70-350
               
               
               Cow position:chr19:34166151-34166456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:71-344
               
               
               Cow position:chr19:11424521-11424234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:71-350
               
               
               Cow position:chr19:22043555-22043267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 11

               
               
               Conread position:71-350
               
               
               Cow position:chr19:43291836-43292142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:72-338
               
               
               Cow position:chr19:48960179-48960476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:72-350
               
               
               Cow position:chr19:19919673-19919373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:72-352
               
               
               Cow position:chr19:20686833-20687127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 165

               
               
               Conread position:73-343
               
               
               Cow position:chr19:25673729-25673443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 170

               
               
               Conread position:73-350
               
               
               Cow position:chr19:23784611-23784330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:73-350
               
               
               Cow position:chr19:32506320-32506028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:74-340
               
               
               Cow position:chr19:4329256-4328974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 169

               
               
               Conread position:75-231
               
               
               Cow position:chr19:2735176-2735008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:77-261
               
               
               Cow position:chr19:1552029-1552225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:80-286
               
               
               Cow position:chr19:33116390-33116611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 173

               
               
               Conread position:80-336
               
               
               Cow position:chr19:22450135-22449851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:83-338
               
               
               Cow position:chr19:34287828-34288099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:85-350
               
               
               Cow position:chr19:729937-729659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:85-350
               
               
               Cow position:chr19:3216823-3217103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:88-350
               
               
               Cow position:chr19:24760079-24759795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:95-346
               
               
               Cow position:chr19:13840172-13840450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:98-308
               
               
               Cow position:chr19:15442582-15442800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:98-329
               
               
               Cow position:chr19:10173300-10173047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):28, 177

               
               
               Conread position:98-335
               
               
               Cow position:chr19:47859495-47859241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:98-350
               
               
               Cow position:chr19:25526101-25526372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:98-351
               
               
               Cow position:chr19:10242400-10242668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:98-374
               
               
               Cow position:chr19:56063618-56063314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:100-286
               
               
               Cow position:chr19:51285449-51285654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 201

               
               
               Conread position:103-353
               
               
               Cow position:chr19:7884404-7884670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:104-276
               
               
               Cow position:chr19:39587703-39587520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 133

               
               
               Conread position:105-238
               
               
               Cow position:chr19:42070120-42069980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:105-350
               
               
               Cow position:chr19:38111297-38111553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 251

               
               
               Conread position:107-355
               
               
               Cow position:chr19:11442806-11443085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:108-350
               
               
               Cow position:chr19:25807473-25807218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:111-350
               
               
               Cow position:chr19:7404546-7404287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:113-367
               
               
               Cow position:chr19:12747943-12747670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:114-286
               
               
               Cow position:chr19:14928821-14928642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 139

               
               
               Conread position:114-337
               
               
               Cow position:chr19:31535961-31536203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:114-347
               
               
               Cow position:chr19:17020128-17020369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:118-290
               
               
               Cow position:chr19:18153008-18153184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 12

               
               
               Conread position:118-300
               
               
               Cow position:chr19:46822298-46822486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:123-350
               
               
               Cow position:chr19:21816806-21817051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 233

               
               
               Conread position:123-350
               
               
               Cow position:chr19:46094795-46094547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:124-350
               
               
               Cow position:chr19:33237021-33237263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):57, 114

               
               
               Conread position:124-355
               
               
               Cow position:chr19:50682594-50682351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:125-350
               
               
               Cow position:chr19:39385191-39384952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:125-350
               
               
               Cow position:chr19:47453282-47453521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:126-355
               
               
               Cow position:chr19:15852795-15853021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:128-350
               
               
               Cow position:chr19:52185920-52185676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:129-346
               
               
               Cow position:chr19:32505894-32505670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):61, 12

               
               
               Conread position:129-350
               
               
               Cow position:chr19:4800593-4800831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 6

               
               
               Conread position:131-306
               
               
               Cow position:chr19:50849674-50849857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:131-346
               
               
               Cow position:chr19:39254602-39254360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:134-351
               
               
               Cow position:chr19:15092272-15092046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:136-349
               
               
               Cow position:chr19:24085795-24086014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:137-350
               
               
               Cow position:chr19:52750902-52750669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:138-350
               
               
               Cow position:chr19:41695800-41695572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:139-353
               
               
               Cow position:chr19:13121414-13121192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:145-341
               
               
               Cow position:chr19:42886824-42887029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:151-350
               
               
               Cow position:chr19:10971223-10971006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:170-350
               
               
               Cow position:chr19:6343969-6344162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:184-350
               
               
               Cow position:chr19:37467145-37466972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 30

               
               
               Conread position:185-344
               
               
               Cow position:chr19:2221163-2220992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:185-350
               
               
               Cow position:chr19:25763028-25763200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:186-345
               
               
               Cow position:chr19:3870520-3870691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:186-347
               
               
               Cow position:chr19:47986772-47986945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr19:2224184-2224014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:186-351
               
               
               Cow position:chr19:35322220-35322045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:188-344
               
               
               Cow position:chr19:39649157-39648993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:188-347
               
               
               Cow position:chr19:39781435-39781606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:188-350
               
               
               Cow position:chr19:8965180-8965352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:188-366
               
               
               Cow position:chr19:23394703-23394890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:190-350
               
               
               Cow position:chr19:25410923-25410759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:190-364
               
               
               Cow position:chr19:16105162-16104977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 36

               
               
               Conread position:212-364
               
               
               Cow position:chr19:23087926-23088089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:239-352
               
               
               Cow position:chr19:43560569-43560684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:33-347
               
               
               Cow position:chr2:70663776-70664115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:33-350
               
               
               Cow position:chr2:23848058-23847734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:49-222
               
               
               Cow position:chr2:11706193-11706368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:51-366
               
               
               Cow position:chr2:71437604-71437261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:52-350
               
               
               Cow position:chr2:69823368-69823690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:53-163
               
               
               Cow position:chr2:43123102-43123216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:53-350
               
               
               Cow position:chr2:50565709-50566034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:54-350
               
               
               Cow position:chr2:43596388-43596052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:55-161
               
               
               Cow position:chr2:46153424-46153314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:55-182
               
               
               Cow position:chr2:47119409-47119542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:55-183
               
               
               Cow position:chr2:16412156-16412285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:55-273
               
               
               Cow position:chr2:46171091-46170865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:55-278
               
               
               Cow position:chr2:9767646-9767421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:55-279
               
               
               Cow position:chr2:66615135-66614890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):44, 216

               
               
               Conread position:55-280
               
               
               Cow position:chr2:1658283-1658518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:55-286
               
               
               Cow position:chr2:55387332-55387569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-287
               
               
               Cow position:chr2:68716885-68716640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-288
               
               
               Cow position:chr2:6232401-6232635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:55-288
               
               
               Cow position:chr2:45469788-45470036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):44, 192

               
               
               Conread position:55-291
               
               
               Cow position:chr2:28711203-28710969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:55-332
               
               
               Cow position:chr2:41145094-41145398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 146

               
               
               Conread position:55-337
               
               
               Cow position:chr2:14826069-14826364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 172

               
               
               Conread position:55-346
               
               
               Cow position:chr2:16514573-16514874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:55-346
               
               
               Cow position:chr2:39263272-39263584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:55-346
               
               
               Cow position:chr2:55877180-55877473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:55-346
               
               
               Cow position:chr2:64323034-64323337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):106, 44

               
               
               Conread position:55-347
               
               
               Cow position:chr2:36866981-36866686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:55-350
               
               
               Cow position:chr2:469443-469735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:55-350
               
               
               Cow position:chr2:777912-777587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):44, 314

               
               
               Conread position:55-350
               
               
               Cow position:chr2:5300371-5300695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):44, 313

               
               
               Conread position:55-350
               
               
               Cow position:chr2:13582367-13582684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:55-350
               
               
               Cow position:chr2:17967249-17966928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-350
               
               
               Cow position:chr2:18858350-18858044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:55-350
               
               
               Cow position:chr2:25282891-25283215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 318

               
               
               Conread position:55-350
               
               
               Cow position:chr2:42927667-42927350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:55-350
               
               
               Cow position:chr2:44170340-44170659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:55-350
               
               
               Cow position:chr2:45439239-45439535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:55-350
               
               
               Cow position:chr2:46312234-46312541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:55-350
               
               
               Cow position:chr2:46909654-46909336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr2:73095000-73094694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:55-350
               
               
               Cow position:chr2:82262595-82262276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 314

               
               
               Conread position:55-352
               
               
               Cow position:chr2:63250606-63250305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:55-353
               
               
               Cow position:chr2:54970968-54971283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:55-364
               
               
               Cow position:chr2:32403179-32402852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):104, 39

               
               
               Conread position:55-364
               
               
               Cow position:chr2:38362588-38362249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-364
               
               
               Cow position:chr2:45936171-45935849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:55-366
               
               
               Cow position:chr2:46294253-46293930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:56-182
               
               
               Cow position:chr2:44032745-44032626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-182
               
               
               Cow position:chr2:49608372-49608504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr2:53574892-53575018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:56-182
               
               
               Cow position:chr2:80177978-80177847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr2:73985236-73985100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-191
               
               
               Cow position:chr2:14884069-14884209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:56-191
               
               
               Cow position:chr2:46734242-46734382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr2:47138622-47138766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-207
               
               
               Cow position:chr2:12979237-12979078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:56-213
               
               
               Cow position:chr2:68084299-68084469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-214
               
               
               Cow position:chr2:35882547-35882377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-219
               
               
               Cow position:chr2:32406468-32406642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 142

               
               
               Conread position:56-220
               
               
               Cow position:chr2:28637498-28637325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:56-224
               
               
               Cow position:chr2:20980185-20980364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:56-229
               
               
               Cow position:chr2:24709559-24709371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 170

               
               
               Conread position:56-239
               
               
               Cow position:chr2:11900215-11900410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-254
               
               
               Cow position:chr2:22968933-22969139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:56-260
               
               
               Cow position:chr2:21356069-21355848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-264
               
               
               Cow position:chr2:25964700-25964481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-266
               
               
               Cow position:chr2:1134609-1134381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-269
               
               
               Cow position:chr2:45311342-45311107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-269
               
               
               Cow position:chr2:85246546-85246322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-271
               
               
               Cow position:chr2:73466729-73466512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:56-272
               
               
               Cow position:chr2:27600760-27600532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-272
               
               
               Cow position:chr2:41525937-41525710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:56-272
               
               
               Cow position:chr2:52386136-52385903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-273
               
               
               Cow position:chr2:26555802-26555579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-273
               
               
               Cow position:chr2:27076501-27076724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 182

               
               
               Conread position:56-273
               
               
               Cow position:chr2:55480453-55480224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-273
               
               
               Cow position:chr2:58248080-58247861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:56-274
               
               
               Cow position:chr2:21407705-21407938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:56-274
               
               
               Cow position:chr2:46020690-46020920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:56-276
               
               
               Cow position:chr2:333291-333085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-276
               
               
               Cow position:chr2:20940224-20940457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr2:31125568-31125797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 183

               
               
               Conread position:56-276
               
               
               Cow position:chr2:64473850-64473622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 169

               
               
               Conread position:56-276
               
               
               Cow position:chr2:80797460-80797682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 63

               
               
               Conread position:56-277
               
               
               Cow position:chr2:306063-305831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:56-277
               
               
               Cow position:chr2:13543810-13544042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:56-278
               
               
               Cow position:chr2:56102685-56102435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-279
               
               
               Cow position:chr2:21171183-21171401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-279
               
               
               Cow position:chr2:66404144-66403911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:56-280
               
               
               Cow position:chr2:15815375-15815607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:56-280
               
               
               Cow position:chr2:24469872-24469636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-280
               
               
               Cow position:chr2:50445679-50445923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr2:52332845-52332616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:56-280
               
               
               Cow position:chr2:74031203-74030967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-285
               
               
               Cow position:chr2:24668941-24669182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 143

               
               
               Conread position:56-286
               
               
               Cow position:chr2:1365106-1364864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 180

               
               
               Conread position:56-286
               
               
               Cow position:chr2:4273480-4273240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-286
               
               
               Cow position:chr2:11616884-11617121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:56-286
               
               
               Cow position:chr2:28118286-28118527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:56-286
               
               
               Cow position:chr2:29268846-29269094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-286
               
               
               Cow position:chr2:37347585-37347811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 107

               
               
               Conread position:56-286
               
               
               Cow position:chr2:40881870-40882098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-286
               
               
               Cow position:chr2:46344473-46344717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 191

               
               
               Conread position:56-286
               
               
               Cow position:chr2:52171036-52171282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:56-286
               
               
               Cow position:chr2:55960823-55960585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:56-286
               
               
               Cow position:chr2:62978880-62978647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-287
               
               
               Cow position:chr2:1210983-1210735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-287
               
               
               Cow position:chr2:13467483-13467726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-287
               
               
               Cow position:chr2:15063482-15063241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:56-287
               
               
               Cow position:chr2:34535373-34535129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:56-287
               
               
               Cow position:chr2:36105055-36105296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-287
               
               
               Cow position:chr2:56771628-56771853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-287
               
               
               Cow position:chr2:66217755-66217515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-287
               
               
               Cow position:chr2:74353680-74353927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-288
               
               
               Cow position:chr2:23493318-23493565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-288
               
               
               Cow position:chr2:25283595-25283840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-288
               
               
               Cow position:chr2:25285339-25285584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-288
               
               
               Cow position:chr2:47808514-47808756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-288
               
               
               Cow position:chr2:77241643-77241894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-290
               
               
               Cow position:chr2:39662483-39662736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:56-291
               
               
               Cow position:chr2:12821794-12821564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:56-307
               
               
               Cow position:chr2:61974580-61974854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-308
               
               
               Cow position:chr2:7965907-7966151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-310
               
               
               Cow position:chr2:40691272-40691542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-312
               
               
               Cow position:chr2:36878433-36878156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-317
               
               
               Cow position:chr2:76183022-76182755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-327
               
               
               Cow position:chr2:69676750-69676453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-334
               
               
               Cow position:chr2:21416098-21416382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:56-334
               
               
               Cow position:chr2:74209541-74209250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-336
               
               
               Cow position:chr2:11696915-11697213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-337
               
               
               Cow position:chr2:2334-2041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 116

               
               
               Conread position:56-337
               
               
               Cow position:chr2:6038789-6039101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-337
               
               
               Cow position:chr2:29882952-29882668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:56-337
               
               
               Cow position:chr2:46357630-46357917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-337
               
               
               Cow position:chr2:71624594-71624309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:56-338
               
               
               Cow position:chr2:8295619-8295889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-339
               
               
               Cow position:chr2:80115889-80116187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-341
               
               
               Cow position:chr2:988475-988779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-341
               
               
               Cow position:chr2:28319067-28318780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):44, 129

               
               
               Conread position:56-341
               
               
               Cow position:chr2:45665816-45666125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-342
               
               
               Cow position:chr2:46262229-46262534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-342
               
               
               Cow position:chr2:47990224-47990530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-342
               
               
               Cow position:chr2:56846537-56846840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:56-343
               
               
               Cow position:chr2:36963318-36963616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:56-343
               
               
               Cow position:chr2:44551049-44550755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-344
               
               
               Cow position:chr2:7524356-7524037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:56-344
               
               
               Cow position:chr2:24271011-24271313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-344
               
               
               Cow position:chr2:27173152-27173462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:56-344
               
               
               Cow position:chr2:40728143-40728445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:56-344
               
               
               Cow position:chr2:42192229-42192532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:56-344
               
               
               Cow position:chr2:50400205-50400508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 250

               
               
               Conread position:56-344
               
               
               Cow position:chr2:57939467-57939776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-345
               
               
               Cow position:chr2:4384108-4383801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-345
               
               
               Cow position:chr2:41461148-41461465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:56-345
               
               
               Cow position:chr2:46033116-46033431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:56-346
               
               
               Cow position:chr2:2590161-2589859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:56-346
               
               
               Cow position:chr2:15249968-15250278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-346
               
               
               Cow position:chr2:15329187-15329479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):132, 43

               
               
               Conread position:56-346
               
               
               Cow position:chr2:16428616-16428304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-346
               
               
               Cow position:chr2:21002970-21003271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:56-346
               
               
               Cow position:chr2:29802322-29802039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):70, 6

               
               
               Conread position:56-346
               
               
               Cow position:chr2:53533022-53532715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:56-346
               
               
               Cow position:chr2:62644385-62644689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:56-346
               
               
               Cow position:chr2:69419793-69419488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:56-347
               
               
               Cow position:chr2:11599225-11599520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-347
               
               
               Cow position:chr2:13684490-13684798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:56-347
               
               
               Cow position:chr2:45499412-45499104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-347
               
               
               Cow position:chr2:46330841-46331163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-347
               
               
               Cow position:chr2:51799536-51799229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):67, 205

               
               
               Conread position:56-348
               
               
               Cow position:chr2:37072598-37072896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-348
               
               
               Cow position:chr2:57776133-57776445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-348
               
               
               Cow position:chr2:80325064-80324748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:56-349
               
               
               Cow position:chr2:41897245-41897543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr2:1303734-1304050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 119

               
               
               Conread position:56-350
               
               
               Cow position:chr2:6282230-6281940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr2:6697708-6697403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr2:7193987-7194308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 316

               
               
               Conread position:56-350
               
               
               Cow position:chr2:9173475-9173171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr2:9687791-9687470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-350
               
               
               Cow position:chr2:12237454-12237140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr2:13354460-13354778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-350
               
               
               Cow position:chr2:14349582-14349869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):227, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr2:14710321-14710019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:56-350
               
               
               Cow position:chr2:15059283-15058964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr2:15597685-15597377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr2:17114951-17114629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr2:17444579-17444899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr2:17940503-17940188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr2:18621191-18621517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr2:19212259-19211957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr2:19287292-19286981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr2:19493998-19494315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr2:21383072-21382752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr2:22372162-22371851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-350
               
               
               Cow position:chr2:23120972-23120668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr2:26102565-26102868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 177

               
               
               Conread position:56-350
               
               
               Cow position:chr2:27337990-27337678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:56-350
               
               
               Cow position:chr2:30642885-30642562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-350
               
               
               Cow position:chr2:30816741-30817069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr2:31499786-31500102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:56-350
               
               
               Cow position:chr2:31783729-31784030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):124, 61

               
               
               Conread position:56-350
               
               
               Cow position:chr2:32048273-32048580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr2:32264611-32264292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr2:32408698-32408408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:56-350
               
               
               Cow position:chr2:32417072-32416759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-350
               
               
               Cow position:chr2:33554374-33554069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr2:36056012-36055698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr2:36077129-36077452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 305

               
               
               Conread position:56-350
               
               
               Cow position:chr2:37009203-37009511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr2:38658998-38658686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):63, 144

               
               
               Conread position:56-350
               
               
               Cow position:chr2:38795977-38795668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 304

               
               
               Conread position:56-350
               
               
               Cow position:chr2:38965405-38965718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-350
               
               
               Cow position:chr2:39489569-39489875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:56-350
               
               
               Cow position:chr2:39564138-39564454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr2:39663180-39663468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr2:39815502-39815184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr2:40403236-40402926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr2:40492154-40492457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr2:40879874-40880169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-350
               
               
               Cow position:chr2:41184851-41185159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):142, 61

               
               
               Conread position:56-350
               
               
               Cow position:chr2:41248353-41248672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr2:41710664-41710954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr2:41954661-41954986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 308

               
               
               Conread position:56-350
               
               
               Cow position:chr2:42183153-42183472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 313

               
               
               Conread position:56-350
               
               
               Cow position:chr2:42255218-42255536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:56-350
               
               
               Cow position:chr2:43473975-43474278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 126

               
               
               Conread position:56-350
               
               
               Cow position:chr2:43994719-43995037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr2:44065376-44065672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-350
               
               
               Cow position:chr2:44229905-44229594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 299

               
               
               Conread position:56-350
               
               
               Cow position:chr2:44482861-44482554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:56-350
               
               
               Cow position:chr2:45575211-45574904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr2:45784516-45784840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr2:46051518-46051211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr2:46194580-46194882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr2:46202052-46202363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr2:47072977-47073288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr2:47624613-47624306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr2:48361352-48361673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr2:50580153-50580463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:56-350
               
               
               Cow position:chr2:51638332-51638652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr2:53430511-53430815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-350
               
               
               Cow position:chr2:54700231-54700556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 319

               
               
               Conread position:56-350
               
               
               Cow position:chr2:55632560-55632875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr2:58074564-58074244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-350
               
               
               Cow position:chr2:59397274-59396954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 276

               
               
               Conread position:56-350
               
               
               Cow position:chr2:64533127-64533433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):54, 136

               
               
               Conread position:56-350
               
               
               Cow position:chr2:67301821-67302116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:56-350
               
               
               Cow position:chr2:70674517-70674825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr2:70704036-70704359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr2:70895815-70896135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr2:73353575-73353893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr2:74249440-74249128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr2:76314074-76313769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:56-350
               
               
               Cow position:chr2:77212396-77212081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr2:78116558-78116263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):63, 52

               
               
               Conread position:56-350
               
               
               Cow position:chr2:79403885-79404192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 133

               
               
               Conread position:56-350
               
               
               Cow position:chr2:80275507-80275193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr2:80963860-80963549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:56-350
               
               
               Cow position:chr2:81349100-81348776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr2:81388475-81388791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr2:81927640-81927948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr2:85339676-85339356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr2:85496529-85496234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:56-351
               
               
               Cow position:chr2:10656052-10655755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:56-351
               
               
               Cow position:chr2:20900683-20900362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 203

               
               
               Conread position:56-351
               
               
               Cow position:chr2:21380618-21380300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-351
               
               
               Cow position:chr2:26501155-26500831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:56-351
               
               
               Cow position:chr2:39584235-39584551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-351
               
               
               Cow position:chr2:39590039-39590359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:56-351
               
               
               Cow position:chr2:46230982-46230662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-351
               
               
               Cow position:chr2:76110180-76110497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):43, 168

               
               
               Conread position:56-352
               
               
               Cow position:chr2:44986541-44986226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-352
               
               
               Cow position:chr2:46745707-46746026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 108

               
               
               Conread position:56-353
               
               
               Cow position:chr2:39068090-39068389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-353
               
               
               Cow position:chr2:47090549-47090865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 298

               
               
               Conread position:56-353
               
               
               Cow position:chr2:67596227-67595917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:56-353
               
               
               Cow position:chr2:70539591-70539269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:56-355
               
               
               Cow position:chr2:192676-192361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:56-355
               
               
               Cow position:chr2:68109958-68109635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-357
               
               
               Cow position:chr2:31910237-31909919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:56-359
               
               
               Cow position:chr2:25597705-25597386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:56-359
               
               
               Cow position:chr2:33262829-33262506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:56-361
               
               
               Cow position:chr2:46227251-46227571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-364
               
               
               Cow position:chr2:46189307-46188979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-364
               
               
               Cow position:chr2:66480396-66480070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-366
               
               
               Cow position:chr2:6160542-6160226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 83

               
               
               Conread position:56-366
               
               
               Cow position:chr2:44081234-44081553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:56-366
               
               
               Cow position:chr2:69250892-69250552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-370
               
               
               Cow position:chr2:15694015-15694326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-391
               
               
               Cow position:chr2:41147657-41148008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 42

               
               
               Conread position:57-203
               
               
               Cow position:chr2:26157927-26157771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr2:68660577-68660728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:57-226
               
               
               Cow position:chr2:31673059-31673237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-267
               
               
               Cow position:chr2:51824713-51824933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:57-280
               
               
               Cow position:chr2:21284725-21284954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):125, 60

               
               
               Conread position:57-287
               
               
               Cow position:chr2:33402703-33402457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 202

               
               
               Conread position:57-288
               
               
               Cow position:chr2:6055753-6055997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):39, 194

               
               
               Conread position:57-288
               
               
               Cow position:chr2:46244240-46243989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-288
               
               
               Cow position:chr2:64292914-64292686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:57-291
               
               
               Cow position:chr2:36007796-36007553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:57-297
               
               
               Cow position:chr2:50777561-50777807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-311
               
               
               Cow position:chr2:39855574-39855848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:57-330
               
               
               Cow position:chr2:35092903-35092615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:57-343
               
               
               Cow position:chr2:76561898-76562200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-350
               
               
               Cow position:chr2:27178439-27178744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:57-350
               
               
               Cow position:chr2:35135757-35136058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:57-350
               
               
               Cow position:chr2:38273329-38273650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):42, 314

               
               
               Conread position:57-350
               
               
               Cow position:chr2:43835778-43835460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr2:54790064-54790383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:57-350
               
               
               Cow position:chr2:56937470-56937780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:57-350
               
               
               Cow position:chr2:70908530-70908227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):102, 37

               
               
               Conread position:57-367
               
               
               Cow position:chr2:38662890-38662584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:58-186
               
               
               Cow position:chr2:72541437-72541302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:58-229
               
               
               Cow position:chr2:13726108-13725938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:58-229
               
               
               Cow position:chr2:70746585-70746769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:58-245
               
               
               Cow position:chr2:12185812-12186008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:58-255
               
               
               Cow position:chr2:12332295-12332504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:58-257
               
               
               Cow position:chr2:45554104-45554311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:58-286
               
               
               Cow position:chr2:29612352-29612579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:58-287
               
               
               Cow position:chr2:45880980-45880748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:58-342
               
               
               Cow position:chr2:52344548-52344844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:58-343
               
               
               Cow position:chr2:21950-21643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):67, 209

               
               
               Conread position:58-349
               
               
               Cow position:chr2:15571740-15571453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:58-350
               
               
               Cow position:chr2:1422156-1422449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-350
               
               
               Cow position:chr2:19294388-19294688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:58-350
               
               
               Cow position:chr2:37113412-37113095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-350
               
               
               Cow position:chr2:44232668-44232352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:58-350
               
               
               Cow position:chr2:46379299-46378998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:58-350
               
               
               Cow position:chr2:52485194-52484859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-350
               
               
               Cow position:chr2:56351130-56350817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 307

               
               
               Conread position:58-352
               
               
               Cow position:chr2:68190850-68190539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:58-364
               
               
               Cow position:chr2:39513813-39514152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:59-285
               
               
               Cow position:chr2:80839343-80839103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:59-346
               
               
               Cow position:chr2:50408473-50408770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):125, 91

               
               
               Conread position:59-350
               
               
               Cow position:chr2:80172-79857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:59-367
               
               
               Cow position:chr2:28820152-28820483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:60-216
               
               
               Cow position:chr2:39362873-39362706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:60-252
               
               
               Cow position:chr2:82648031-82647824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:60-276
               
               
               Cow position:chr2:65604139-65603904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:60-343
               
               
               Cow position:chr2:16564472-16564771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:60-352
               
               
               Cow position:chr2:35948877-35948577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:61-286
               
               
               Cow position:chr2:29159692-29159932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 187

               
               
               Conread position:61-350
               
               
               Cow position:chr2:44051093-44051409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:62-345
               
               
               Cow position:chr2:50766279-50766568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:62-350
               
               
               Cow position:chr2:58686734-58687027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:63-350
               
               
               Cow position:chr2:23301539-23301831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 203

               
               
               Conread position:64-279
               
               
               Cow position:chr2:46353701-46353466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:64-342
               
               
               Cow position:chr2:1300595-1300304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:64-350
               
               
               Cow position:chr2:42969898-42970209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 306

               
               
               Conread position:64-350
               
               
               Cow position:chr2:45623808-45624115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):10, 176

               
               
               Conread position:64-366
               
               
               Cow position:chr2:41185264-41185572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:65-347
               
               
               Cow position:chr2:30639982-30640293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:66-350
               
               
               Cow position:chr2:1708780-1709070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:67-345
               
               
               Cow position:chr2:276495-276772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:67-350
               
               
               Cow position:chr2:46120841-46120541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:69-288
               
               
               Cow position:chr2:66649419-66649642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:69-350
               
               
               Cow position:chr2:16505679-16505375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:70-295
               
               
               Cow position:chr2:82019324-82019091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:70-346
               
               
               Cow position:chr2:41019418-41019112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:70-350
               
               
               Cow position:chr2:43789904-43790201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):29, 42

               
               
               Conread position:70-364
               
               
               Cow position:chr2:23271131-23270816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:71-350
               
               
               Cow position:chr2:14854115-14854405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:72-342
               
               
               Cow position:chr2:9324794-9325092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:72-350
               
               
               Cow position:chr2:61421372-61421067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):27, 179

               
               
               Conread position:73-267
               
               
               Cow position:chr2:47784173-47784373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 135

               
               
               Conread position:73-335
               
               
               Cow position:chr2:3309227-3308941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:74-274
               
               
               Cow position:chr2:37424304-37424081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:74-347
               
               
               Cow position:chr2:17341704-17341983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:75-270
               
               
               Cow position:chr2:59915026-59915227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:75-280
               
               
               Cow position:chr2:70656760-70656968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:75-350
               
               
               Cow position:chr2:5130645-5130353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:78-350
               
               
               Cow position:chr2:26850969-26851263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):21, 219

               
               
               Conread position:81-346
               
               
               Cow position:chr2:45478778-45478500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 134

               
               
               Conread position:81-350
               
               
               Cow position:chr2:549516-549229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:83-350
               
               
               Cow position:chr2:36575553-36575835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 144

               
               
               Conread position:83-350
               
               
               Cow position:chr2:47152722-47152450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 159

               
               
               Conread position:85-351
               
               
               Cow position:chr2:58056879-58057162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 152

               
               
               Conread position:92-364
               
               
               Cow position:chr2:44004782-44005072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:96-350
               
               
               Cow position:chr2:16331900-16332147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:98-345
               
               
               Cow position:chr2:46343310-46343052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 132

               
               
               Conread position:98-350
               
               
               Cow position:chr2:12686959-12686690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):7, 263

               
               
               Conread position:98-350
               
               
               Cow position:chr2:47055736-47056008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 152

               
               
               Conread position:98-350
               
               
               Cow position:chr2:47064948-47065207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:98-364
               
               
               Cow position:chr2:84970879-84970596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):26, 140

               
               
               Conread position:99-350
               
               
               Cow position:chr2:991988-992256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:100-281
               
               
               Cow position:chr2:46175425-46175238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:100-314
               
               
               Cow position:chr2:61962623-61962400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 151

               
               
               Conread position:100-344
               
               
               Cow position:chr2:25448161-25448423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:100-350
               
               
               Cow position:chr2:17328583-17328850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:101-345
               
               
               Cow position:chr2:70780927-70781187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:102-335
               
               
               Cow position:chr2:14218483-14218737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:103-286
               
               
               Cow position:chr2:67313856-67313663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:103-350
               
               
               Cow position:chr2:15298372-15298639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:103-350
               
               
               Cow position:chr2:46130316-46130059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:104-286
               
               
               Cow position:chr2:38785769-38785573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:104-319
               
               
               Cow position:chr2:14900980-14901209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:104-343
               
               
               Cow position:chr2:83410344-83410598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:105-344
               
               
               Cow position:chr2:5998782-5999042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:105-350
               
               
               Cow position:chr2:45565538-45565806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 145

               
               
               Conread position:105-364
               
               
               Cow position:chr2:31460495-31460218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 141

               
               
               Conread position:107-251
               
               
               Cow position:chr2:45537598-45537443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:111-350
               
               
               Cow position:chr2:46119916-46119667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:119-350
               
               
               Cow position:chr2:24593723-24593968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:119-350
               
               
               Cow position:chr2:58135545-58135291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:120-350
               
               
               Cow position:chr2:45367147-45367394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:122-281
               
               
               Cow position:chr2:75461744-75461907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 6

               
               
               Conread position:122-352
               
               
               Cow position:chr2:58153560-58153807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:123-344
               
               
               Cow position:chr2:76764848-76764611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:123-350
               
               
               Cow position:chr2:20362788-20362554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:123-350
               
               
               Cow position:chr2:54967862-54968108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):60, 111

               
               
               Conread position:123-350
               
               
               Cow position:chr2:77467588-77467349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:123-367
               
               
               Cow position:chr2:67745109-67745359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:124-289
               
               
               Cow position:chr2:47159776-47159947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:125-335
               
               
               Cow position:chr2:69367273-69367041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:128-350
               
               
               Cow position:chr2:44025233-44025477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 241

               
               
               Conread position:130-364
               
               
               Cow position:chr2:80769981-80770232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:131-346
               
               
               Cow position:chr2:39597827-39598060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:132-350
               
               
               Cow position:chr2:65931829-65932065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:133-288
               
               
               Cow position:chr2:46406184-46406353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 164

               
               
               Conread position:133-344
               
               
               Cow position:chr2:72407625-72407404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):55, 119

               
               
               Conread position:137-351
               
               
               Cow position:chr2:42293121-42293352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:143-346
               
               
               Cow position:chr2:30351827-30351609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:145-350
               
               
               Cow position:chr2:12051027-12051250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:149-350
               
               
               Cow position:chr2:40597461-40597669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 203

               
               
               Conread position:150-347
               
               
               Cow position:chr2:14733998-14734203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:153-364
               
               
               Cow position:chr2:4016954-4016731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:154-350
               
               
               Cow position:chr2:44222717-44222925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:158-350
               
               
               Cow position:chr2:13935599-13935807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 205

               
               
               Conread position:159-350
               
               
               Cow position:chr2:50352779-50352994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:164-350
               
               
               Cow position:chr2:29859916-29860103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):76, 102

               
               
               Conread position:173-350
               
               
               Cow position:chr2:16018317-16018131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:178-350
               
               
               Cow position:chr2:15348311-15348493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 57

               
               
               Conread position:180-350
               
               
               Cow position:chr2:68870612-68870791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:185-343
               
               
               Cow position:chr2:870419-870261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:186-337
               
               
               Cow position:chr2:64131349-64131506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:186-346
               
               
               Cow position:chr2:46383537-46383369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 48

               
               
               Conread position:186-347
               
               
               Cow position:chr2:19137965-19137792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr2:29734751-29734920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 152

               
               
               Conread position:186-350
               
               
               Cow position:chr2:43123266-43123440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):73, 43

               
               
               Conread position:186-350
               
               
               Cow position:chr2:55062814-55062978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 47

               
               
               Conread position:186-350
               
               
               Cow position:chr2:69350640-69350464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:187-347
               
               
               Cow position:chr2:78197802-78197966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:188-351
               
               
               Cow position:chr2:13645250-13645421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:191-350
               
               
               Cow position:chr2:80177656-80177490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 118

               
               
               Conread position:199-350
               
               
               Cow position:chr2:46161895-46162058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:209-370
               
               
               Cow position:chr2:80903957-80903796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:225-346
               
               
               Cow position:chr2:64773352-64773482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:49-337
               
               
               Cow position:chr20:32578098-32577792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:50-350
               
               
               Cow position:chr20:13876887-13876569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 98

               
               
               Conread position:52-287
               
               
               Cow position:chr20:3740177-3739934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:55-164
               
               
               Cow position:chr20:14718915-14718802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-193
               
               
               Cow position:chr20:12441866-12441718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-217
               
               
               Cow position:chr20:22445809-22445636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-226
               
               
               Cow position:chr20:12334208-12334386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 44

               
               
               Conread position:55-272
               
               
               Cow position:chr20:24391806-24392034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:55-276
               
               
               Cow position:chr20:34240351-34240597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 185

               
               
               Conread position:55-280
               
               
               Cow position:chr20:22235141-22235370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-285
               
               
               Cow position:chr20:31069461-31069707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:55-286
               
               
               Cow position:chr20:6890531-6890782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 196

               
               
               Conread position:55-286
               
               
               Cow position:chr20:14735502-14735737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-286
               
               
               Cow position:chr20:30778002-30778237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:55-293
               
               
               Cow position:chr20:36374102-36373864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:55-305
               
               
               Cow position:chr20:31261558-31261814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:55-326
               
               
               Cow position:chr20:8429567-8429866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 184

               
               
               Conread position:55-336
               
               
               Cow position:chr20:34001570-34001261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-341
               
               
               Cow position:chr20:35797431-35797743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:55-342
               
               
               Cow position:chr20:3141409-3141709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 165

               
               
               Conread position:55-344
               
               
               Cow position:chr20:15593122-15593423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 95

               
               
               Conread position:55-348
               
               
               Cow position:chr20:3426984-3427271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:55-350
               
               
               Cow position:chr20:6602867-6603184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 55

               
               
               Conread position:55-350
               
               
               Cow position:chr20:9412318-9412631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 97

               
               
               Conread position:55-350
               
               
               Cow position:chr20:19328225-19328530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:55-350
               
               
               Cow position:chr20:20967166-20967463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:55-350
               
               
               Cow position:chr20:28067600-28067281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-350
               
               
               Cow position:chr20:28605031-28605352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-350
               
               
               Cow position:chr20:33144729-33144410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):41, 192

               
               
               Conread position:55-350
               
               
               Cow position:chr20:34098132-34097811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-350
               
               
               Cow position:chr20:34202473-34202777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:55-352
               
               
               Cow position:chr20:8578070-8578394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 177

               
               
               Conread position:55-352
               
               
               Cow position:chr20:11542457-11542142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:55-366
               
               
               Cow position:chr20:13994635-13994972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 168

               
               
               Conread position:56-157
               
               
               Cow position:chr20:20899062-20899163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-166
               
               
               Cow position:chr20:4893070-4892961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-176
               
               
               Cow position:chr20:23850111-23850234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:56-182
               
               
               Cow position:chr20:35741580-35741709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr20:35760498-35760626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-186
               
               
               Cow position:chr20:3658869-3658740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-194
               
               
               Cow position:chr20:16291299-16291443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:56-196
               
               
               Cow position:chr20:18399587-18399730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 133

               
               
               Conread position:56-199
               
               
               Cow position:chr20:4781389-4781541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-220
               
               
               Cow position:chr20:5104608-5104436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-220
               
               
               Cow position:chr20:33177009-33177194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr20:17733951-17733764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr20:23679319-23679137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-244
               
               
               Cow position:chr20:8020721-8020926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-249
               
               
               Cow position:chr20:37200180-37200394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:56-251
               
               
               Cow position:chr20:8910751-8910954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-257
               
               
               Cow position:chr20:26679949-26680164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 178

               
               
               Conread position:56-266
               
               
               Cow position:chr20:3781599-3781374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:56-266
               
               
               Cow position:chr20:27339893-27340112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:56-267
               
               
               Cow position:chr20:6848448-6848681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-272
               
               
               Cow position:chr20:10178283-10178043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-272
               
               
               Cow position:chr20:26469238-26469009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-273
               
               
               Cow position:chr20:23936591-23936348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr20:9379236-9379465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-277
               
               
               Cow position:chr20:40256797-40257030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-278
               
               
               Cow position:chr20:35176942-35176716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-279
               
               
               Cow position:chr20:23505655-23505890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:56-280
               
               
               Cow position:chr20:5998837-5998608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-280
               
               
               Cow position:chr20:24521578-24521812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-281
               
               
               Cow position:chr20:20312910-20312683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:56-286
               
               
               Cow position:chr20:7132175-7132418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-286
               
               
               Cow position:chr20:12155275-12155054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:56-286
               
               
               Cow position:chr20:13967431-13967188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 240

               
               
               Conread position:56-286
               
               
               Cow position:chr20:16715227-16715460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:56-286
               
               
               Cow position:chr20:17903987-17904227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-286
               
               
               Cow position:chr20:22313330-22313092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-286
               
               
               Cow position:chr20:22704115-22704363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-286
               
               
               Cow position:chr20:39019522-39019764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:56-287
               
               
               Cow position:chr20:18185406-18185636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 43

               
               
               Conread position:56-287
               
               
               Cow position:chr20:39325212-39325461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:56-289
               
               
               Cow position:chr20:5116478-5116241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-290
               
               
               Cow position:chr20:33435342-33435091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):15, 192

               
               
               Conread position:56-290
               
               
               Cow position:chr20:35958472-35958721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-291
               
               
               Cow position:chr20:10034101-10033845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:56-291
               
               
               Cow position:chr20:34251851-34251599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-293
               
               
               Cow position:chr20:11923412-11923170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-296
               
               
               Cow position:chr20:15761121-15760870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-310
               
               
               Cow position:chr20:8607093-8606830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:56-314
               
               
               Cow position:chr20:9014521-9014241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 176

               
               
               Conread position:56-325
               
               
               Cow position:chr20:24398805-24398528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 53

               
               
               Conread position:56-327
               
               
               Cow position:chr20:4205790-4206092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-332
               
               
               Cow position:chr20:37165553-37165835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-342
               
               
               Cow position:chr20:14879614-14879924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-344
               
               
               Cow position:chr20:398467-398169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-344
               
               
               Cow position:chr20:6240702-6240384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-344
               
               
               Cow position:chr20:7182849-7182551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-344
               
               
               Cow position:chr20:40185849-40185544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:56-345
               
               
               Cow position:chr20:14572529-14572226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 95

               
               
               Conread position:56-345
               
               
               Cow position:chr20:15549070-15548759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:56-345
               
               
               Cow position:chr20:26076911-26077220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 140

               
               
               Conread position:56-346
               
               
               Cow position:chr20:4621512-4621215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-346
               
               
               Cow position:chr20:6423791-6424107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:56-346
               
               
               Cow position:chr20:6903154-6903453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-346
               
               
               Cow position:chr20:21372143-21372447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:56-347
               
               
               Cow position:chr20:6096658-6096355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:56-347
               
               
               Cow position:chr20:8556447-8556129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-347
               
               
               Cow position:chr20:19236905-19237215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 157

               
               
               Conread position:56-347
               
               
               Cow position:chr20:34107943-34108245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:56-347
               
               
               Cow position:chr20:39398315-39398621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:56-349
               
               
               Cow position:chr20:7806735-7806428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 198

               
               
               Conread position:56-349
               
               
               Cow position:chr20:12205887-12205592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:56-349
               
               
               Cow position:chr20:28296117-28296436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 188

               
               
               Conread position:56-350
               
               
               Cow position:chr20:581094-580777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-350
               
               
               Cow position:chr20:1139946-1139626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 271

               
               
               Conread position:56-350
               
               
               Cow position:chr20:3599563-3599255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr20:4945418-4945112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):98, 162

               
               
               Conread position:56-350
               
               
               Cow position:chr20:5702572-5702867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr20:7756802-7756482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 271

               
               
               Conread position:56-350
               
               
               Cow position:chr20:9433425-9433730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr20:9473787-9473489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr20:9536961-9537274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 308

               
               
               Conread position:56-350
               
               
               Cow position:chr20:9923424-9923709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr20:10208629-10208951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr20:12420794-12420476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr20:12996181-12995863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr20:13023651-13023360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:56-350
               
               
               Cow position:chr20:13752067-13752368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):47, 106

               
               
               Conread position:56-350
               
               
               Cow position:chr20:13829091-13829402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr20:14806713-14807030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr20:17670009-17670325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr20:19751136-19751450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:56-350
               
               
               Cow position:chr20:20739462-20739145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 312

               
               
               Conread position:56-350
               
               
               Cow position:chr20:21714580-21714911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr20:22064897-22065209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr20:23065002-23064692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr20:32847180-32847488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr20:33363347-33363661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr20:36207629-36207957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr20:36779904-36779586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:56-350
               
               
               Cow position:chr20:38551201-38551508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:56-350
               
               
               Cow position:chr20:38768626-38768320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr20:38817837-38818143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr20:39418067-39417761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:56-350
               
               
               Cow position:chr20:40423263-40422960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:56-350
               
               
               Cow position:chr20:40781795-40782103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):17, 171

               
               
               Conread position:56-350
               
               
               Cow position:chr20:42469592-42469902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:56-351
               
               
               Cow position:chr20:14980688-14980361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-351
               
               
               Cow position:chr20:21019392-21019705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 97

               
               
               Conread position:56-352
               
               
               Cow position:chr20:23846845-23846519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-352
               
               
               Cow position:chr20:35364878-35365187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:56-355
               
               
               Cow position:chr20:12239853-12239535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:56-355
               
               
               Cow position:chr20:26996357-26996677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-364
               
               
               Cow position:chr20:17251535-17251876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:56-364
               
               
               Cow position:chr20:21345233-21345592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-366
               
               
               Cow position:chr20:20983834-20984153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:56-366
               
               
               Cow position:chr20:33532138-33532461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-429
               
               
               Cow position:chr20:40511931-40511540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:57-286
               
               
               Cow position:chr20:11482311-11482066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:57-288
               
               
               Cow position:chr20:34918107-34918342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):126, 42

               
               
               Conread position:57-318
               
               
               Cow position:chr20:34364863-34365126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:57-328
               
               
               Cow position:chr20:3607126-3606840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:57-345
               
               
               Cow position:chr20:24069638-24069944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:57-347
               
               
               Cow position:chr20:7442295-7441996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:57-350
               
               
               Cow position:chr20:7550069-7550367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-350
               
               
               Cow position:chr20:15566003-15565686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:57-350
               
               
               Cow position:chr20:22959514-22959206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 182

               
               
               Conread position:57-350
               
               
               Cow position:chr20:29844883-29845193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:57-350
               
               
               Cow position:chr20:34777014-34777323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 185

               
               
               Conread position:57-350
               
               
               Cow position:chr20:38578929-38578621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:58-181
               
               
               Cow position:chr20:5025473-5025349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:58-211
               
               
               Cow position:chr20:33170046-33169877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-287
               
               
               Cow position:chr20:39377316-39377096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:58-349
               
               
               Cow position:chr20:30817366-30817659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:58-350
               
               
               Cow position:chr20:6054684-6054367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:58-350
               
               
               Cow position:chr20:17845788-17846102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:58-350
               
               
               Cow position:chr20:35907218-35906907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:58-350
               
               
               Cow position:chr20:39728277-39728594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:58-350
               
               
               Cow position:chr20:42459023-42458713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:59-344
               
               
               Cow position:chr20:21928734-21929042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):40, 184

               
               
               Conread position:59-347
               
               
               Cow position:chr20:29805832-29805519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):40, 287

               
               
               Conread position:59-347
               
               
               Cow position:chr20:31080874-31081178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:59-350
               
               
               Cow position:chr20:3321308-3321002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:59-350
               
               
               Cow position:chr20:14759834-14759522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):40, 183

               
               
               Conread position:59-350
               
               
               Cow position:chr20:15235595-15235895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:60-176
               
               
               Cow position:chr20:12839886-12840007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 109

               
               
               Conread position:60-288
               
               
               Cow position:chr20:28831794-28832041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 242

               
               
               Conread position:62-266
               
               
               Cow position:chr20:27314513-27314719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:62-350
               
               
               Cow position:chr20:5636313-5636624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 105

               
               
               Conread position:62-350
               
               
               Cow position:chr20:5814401-5814708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 183

               
               
               Conread position:62-351
               
               
               Cow position:chr20:14100605-14100292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):37, 29

               
               
               Conread position:65-279
               
               
               Cow position:chr20:18100252-18100470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:65-346
               
               
               Cow position:chr20:13652521-13652228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 129

               
               
               Conread position:67-288
               
               
               Cow position:chr20:746787-747015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 161

               
               
               Conread position:67-350
               
               
               Cow position:chr20:10200185-10200488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 298

               
               
               Conread position:69-263
               
               
               Cow position:chr20:7659375-7659171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:72-287
               
               
               Cow position:chr20:32988989-32988761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:72-288
               
               
               Cow position:chr20:10348593-10348822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:72-288
               
               
               Cow position:chr20:15312502-15312741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:72-350
               
               
               Cow position:chr20:2169865-2169580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:72-355
               
               
               Cow position:chr20:20241943-20242232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:73-350
               
               
               Cow position:chr20:15569106-15568806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 155

               
               
               Conread position:74-341
               
               
               Cow position:chr20:34221319-34221613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 175

               
               
               Conread position:75-288
               
               
               Cow position:chr20:24727220-24727434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:76-250
               
               
               Cow position:chr20:10468913-10469099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:76-347
               
               
               Cow position:chr20:1575946-1576237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:76-350
               
               
               Cow position:chr20:13025761-13025467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:77-350
               
               
               Cow position:chr20:11038451-11038719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:79-292
               
               
               Cow position:chr20:42197177-42197390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:80-182
               
               
               Cow position:chr20:9729936-9730042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:80-313
               
               
               Cow position:chr20:18500070-18500307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:81-350
               
               
               Cow position:chr20:14917152-14917427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:81-350
               
               
               Cow position:chr20:23792459-23792747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:82-350
               
               
               Cow position:chr20:4334667-4334387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:83-350
               
               
               Cow position:chr20:9267244-9266964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:84-347
               
               
               Cow position:chr20:14540210-14540483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:95-350
               
               
               Cow position:chr20:25162262-25161982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:98-334
               
               
               Cow position:chr20:38858538-38858303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:98-347
               
               
               Cow position:chr20:4332008-4332273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:98-350
               
               
               Cow position:chr20:22484730-22485002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):26, 139

               
               
               Conread position:98-350
               
               
               Cow position:chr20:34597229-34596954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:99-345
               
               
               Cow position:chr20:28955828-28955563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 138

               
               
               Conread position:100-347
               
               
               Cow position:chr20:311215-311460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:100-348
               
               
               Cow position:chr20:41089918-41089655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:103-337
               
               
               Cow position:chr20:24000921-24000666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 136

               
               
               Conread position:104-350
               
               
               Cow position:chr20:16941400-16941146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:105-307
               
               
               Cow position:chr20:27003852-27003637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:105-350
               
               
               Cow position:chr20:36633694-36633955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:109-346
               
               
               Cow position:chr20:7362850-7363101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:110-346
               
               
               Cow position:chr20:25657928-25657699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):111, 40

               
               
               Conread position:111-344
               
               
               Cow position:chr20:33067488-33067223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:112-332
               
               
               Cow position:chr20:13794873-13795102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:113-344
               
               
               Cow position:chr20:11188920-11188670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:113-364
               
               
               Cow position:chr20:20099708-20099442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:114-350
               
               
               Cow position:chr20:5385856-5385601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:115-286
               
               
               Cow position:chr20:34901459-34901640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:116-286
               
               
               Cow position:chr20:23103111-23103291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:116-351
               
               
               Cow position:chr20:13983254-13983499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:123-350
               
               
               Cow position:chr20:24711733-24711983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 245

               
               
               Conread position:125-351
               
               
               Cow position:chr20:18379282-18379523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:129-336
               
               
               Cow position:chr20:12430891-12430670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:139-346
               
               
               Cow position:chr20:18392347-18392132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:150-350
               
               
               Cow position:chr20:5078548-5078770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:151-352
               
               
               Cow position:chr20:11135831-11135608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:158-350
               
               
               Cow position:chr20:11359691-11359490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:161-350
               
               
               Cow position:chr20:21428101-21428302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 191

               
               
               Conread position:179-350
               
               
               Cow position:chr20:14620347-14620158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:186-343
               
               
               Cow position:chr20:24902328-24902157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr20:7709815-7709639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:186-350
               
               
               Cow position:chr20:12085454-12085294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:186-366
               
               
               Cow position:chr20:23506499-23506310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:188-350
               
               
               Cow position:chr20:10772176-10772348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 122

               
               
               Conread position:192-350
               
               
               Cow position:chr20:12126328-12126161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:11-350
               
               
               Cow position:chr21:10005083-10004723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 135

               
               
               Conread position:49-214
               
               
               Cow position:chr21:16166791-16166624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:51-220
               
               
               Cow position:chr21:21216298-21216118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:51-366
               
               
               Cow position:chr21:24642361-24642694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):20, 288

               
               
               Conread position:53-286
               
               
               Cow position:chr21:24222693-24222448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:55-164
               
               
               Cow position:chr21:46132131-46132019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-226
               
               
               Cow position:chr21:48484597-48484416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:55-246
               
               
               Cow position:chr21:18494812-18495021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:55-276
               
               
               Cow position:chr21:27743589-27743829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:55-278
               
               
               Cow position:chr21:33997375-33997145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:55-280
               
               
               Cow position:chr21:13898035-13898272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:55-287
               
               
               Cow position:chr21:39664542-39664307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 140

               
               
               Conread position:55-307
               
               
               Cow position:chr21:3813636-3813370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):44, 185

               
               
               Conread position:55-342
               
               
               Cow position:chr21:17174991-17175291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:55-342
               
               
               Cow position:chr21:30849092-30848785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:55-346
               
               
               Cow position:chr21:10633794-10633481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):44, 305

               
               
               Conread position:55-346
               
               
               Cow position:chr21:25382856-25383186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:55-349
               
               
               Cow position:chr21:35997020-35997333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):44, 193

               
               
               Conread position:55-350
               
               
               Cow position:chr21:1058923-1059239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 214

               
               
               Conread position:55-350
               
               
               Cow position:chr21:8125953-8125641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:55-350
               
               
               Cow position:chr21:18800682-18800370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-350
               
               
               Cow position:chr21:19258673-19258982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:55-350
               
               
               Cow position:chr21:23672590-23672909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:55-350
               
               
               Cow position:chr21:28989459-28989777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:55-350
               
               
               Cow position:chr21:30990422-30990123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:55-350
               
               
               Cow position:chr21:32237144-32237443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 129

               
               
               Conread position:55-350
               
               
               Cow position:chr21:33791521-33791218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):44, 55

               
               
               Conread position:55-350
               
               
               Cow position:chr21:37706560-37706252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:55-350
               
               
               Cow position:chr21:39403692-39403361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-350
               
               
               Cow position:chr21:42348831-42348531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-350
               
               
               Cow position:chr21:44671600-44671908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:55-352
               
               
               Cow position:chr21:7710012-7710327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:55-366
               
               
               Cow position:chr21:42384352-42384688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 191

               
               
               Conread position:56-156
               
               
               Cow position:chr21:18713131-18713235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-158
               
               
               Cow position:chr21:31278627-31278732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-170
               
               
               Cow position:chr21:1510921-1511034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-170
               
               
               Cow position:chr21:28029245-28029366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-181
               
               
               Cow position:chr21:4268721-4268852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr21:9334411-9334283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-182
               
               
               Cow position:chr21:34254434-34254302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr21:34658882-34659011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-186
               
               
               Cow position:chr21:13256653-13256783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-190
               
               
               Cow position:chr21:13048349-13048210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:56-196
               
               
               Cow position:chr21:13395403-13395547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:56-218
               
               
               Cow position:chr21:37361620-37361453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:56-220
               
               
               Cow position:chr21:12616987-12617162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:56-222
               
               
               Cow position:chr21:9998873-9998690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr21:28027651-28027839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-236
               
               
               Cow position:chr21:393869-394060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-266
               
               
               Cow position:chr21:912119-911896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-269
               
               
               Cow position:chr21:31676346-31676572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-269
               
               
               Cow position:chr21:42145765-42145992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:56-272
               
               
               Cow position:chr21:35897778-35897563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-273
               
               
               Cow position:chr21:29942854-29943081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:56-274
               
               
               Cow position:chr21:3047532-3047755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:56-275
               
               
               Cow position:chr21:9862777-9862563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-276
               
               
               Cow position:chr21:2785932-2785696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-276
               
               
               Cow position:chr21:5137642-5137407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-280
               
               
               Cow position:chr21:4795073-4795310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-280
               
               
               Cow position:chr21:5455140-5454907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-280
               
               
               Cow position:chr21:8985397-8985636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr21:20262486-20262251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:56-280
               
               
               Cow position:chr21:24607233-24607470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr21:28881990-28882222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:56-280
               
               
               Cow position:chr21:44108855-44109087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-281
               
               
               Cow position:chr21:24765131-24765367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:56-285
               
               
               Cow position:chr21:46143791-46144047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):43, 254

               
               
               Conread position:56-286
               
               
               Cow position:chr21:3381234-3380989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 241

               
               
               Conread position:56-286
               
               
               Cow position:chr21:5636873-5636631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-286
               
               
               Cow position:chr21:12153983-12154222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-286
               
               
               Cow position:chr21:20044926-20044675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 247

               
               
               Conread position:56-286
               
               
               Cow position:chr21:20925659-20925414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 213

               
               
               Conread position:56-286
               
               
               Cow position:chr21:21223137-21223371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-286
               
               
               Cow position:chr21:32535824-32536066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-287
               
               
               Cow position:chr21:42190321-42190082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:56-288
               
               
               Cow position:chr21:10601521-10601283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-288
               
               
               Cow position:chr21:12961055-12960808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-288
               
               
               Cow position:chr21:36756462-36756692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:56-290
               
               
               Cow position:chr21:47802412-47802165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-291
               
               
               Cow position:chr21:28443530-28443280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-291
               
               
               Cow position:chr21:42500880-42501138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 248

               
               
               Conread position:56-306
               
               
               Cow position:chr21:23150172-23149902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:56-314
               
               
               Cow position:chr21:13488367-13488654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-325
               
               
               Cow position:chr21:30231854-30231555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-327
               
               
               Cow position:chr21:4282020-4281734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-330
               
               
               Cow position:chr21:10514655-10514951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:56-332
               
               
               Cow position:chr21:25127455-25127750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 28

               
               
               Conread position:56-335
               
               
               Cow position:chr21:34391123-34390826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-337
               
               
               Cow position:chr21:1591396-1591705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:56-337
               
               
               Cow position:chr21:24887856-24888149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-338
               
               
               Cow position:chr21:42540372-42540070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-342
               
               
               Cow position:chr21:19363616-19363304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-344
               
               
               Cow position:chr21:5898550-5898244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):44, 97

               
               
               Conread position:56-344
               
               
               Cow position:chr21:34565365-34565058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 145

               
               
               Conread position:56-344
               
               
               Cow position:chr21:41878324-41878627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:56-346
               
               
               Cow position:chr21:725044-724719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-346
               
               
               Cow position:chr21:4723327-4723640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 304

               
               
               Conread position:56-346
               
               
               Cow position:chr21:15911248-15911560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-347
               
               
               Cow position:chr21:3818064-3818369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-347
               
               
               Cow position:chr21:5566837-5567147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:56-347
               
               
               Cow position:chr21:31576362-31576652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-347
               
               
               Cow position:chr21:34739694-34740005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr21:42414255-42413936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-347
               
               
               Cow position:chr21:44565853-44565561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:56-348
               
               
               Cow position:chr21:4998639-4998334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:56-348
               
               
               Cow position:chr21:45330760-45330445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr21:33569-33882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-350
               
               
               Cow position:chr21:643181-643488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-350
               
               
               Cow position:chr21:802446-802153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr21:3236378-3236674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr21:3361167-3360852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:56-350
               
               
               Cow position:chr21:3585511-3585204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 94

               
               
               Conread position:56-350
               
               
               Cow position:chr21:3763890-3763579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:56-350
               
               
               Cow position:chr21:4399647-4399967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 217

               
               
               Conread position:56-350
               
               
               Cow position:chr21:5153465-5153784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr21:7582062-7581741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr21:10000928-10001238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:56-350
               
               
               Cow position:chr21:10263888-10264195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr21:12801899-12801583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr21:13163738-13164022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 136

               
               
               Conread position:56-350
               
               
               Cow position:chr21:13585212-13584897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr21:14760428-14760729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):127, 54

               
               
               Conread position:56-350
               
               
               Cow position:chr21:15445231-15444922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 209

               
               
               Conread position:56-350
               
               
               Cow position:chr21:18065076-18064754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 214

               
               
               Conread position:56-350
               
               
               Cow position:chr21:18568802-18568476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-350
               
               
               Cow position:chr21:18790708-18790402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr21:18828462-18828139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr21:19196319-19196001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-350
               
               
               Cow position:chr21:21077178-21077473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:56-350
               
               
               Cow position:chr21:23322236-23321914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):40, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr21:23535564-23535872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr21:23586724-23587044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr21:25764482-25764799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr21:27146144-27145830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 283

               
               
               Conread position:56-350
               
               
               Cow position:chr21:28211044-28211355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr21:28244323-28244633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr21:28734064-28733749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr21:29484831-29485142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr21:30592456-30592145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr21:30607240-30606922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr21:31691326-31691646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr21:32559506-32559201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:56-350
               
               
               Cow position:chr21:33263698-33264008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:56-350
               
               
               Cow position:chr21:33350590-33350905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr21:34010543-34010233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr21:36795451-36795767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr21:37345254-37344937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-350
               
               
               Cow position:chr21:38449604-38449285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr21:38900622-38900937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr21:38918062-38918361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:56-350
               
               
               Cow position:chr21:40589635-40589318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:56-350
               
               
               Cow position:chr21:41579595-41579920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr21:41597663-41597974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:56-350
               
               
               Cow position:chr21:41620967-41621288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr21:41974531-41974214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr21:44251978-44251680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr21:44826036-44825722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-350
               
               
               Cow position:chr21:45330093-45329786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:56-350
               
               
               Cow position:chr21:45850863-45850543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):42, 142

               
               
               Conread position:56-350
               
               
               Cow position:chr21:46849275-46848964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-350
               
               
               Cow position:chr21:47764265-47763954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:56-351
               
               
               Cow position:chr21:17643125-17642820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):41, 139

               
               
               Conread position:56-351
               
               
               Cow position:chr21:31253384-31253699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):24, 187

               
               
               Conread position:56-352
               
               
               Cow position:chr21:395723-396033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-352
               
               
               Cow position:chr21:13365192-13365508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-353
               
               
               Cow position:chr21:47760623-47760934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:56-355
               
               
               Cow position:chr21:41590709-41590396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-355
               
               
               Cow position:chr21:47465273-47464950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):57, 96

               
               
               Conread position:56-358
               
               
               Cow position:chr21:43631355-43631048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-362
               
               
               Cow position:chr21:47861042-47861366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-364
               
               
               Cow position:chr21:641432-641767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:56-364
               
               
               Cow position:chr21:7672980-7673299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:56-364
               
               
               Cow position:chr21:15976489-15976812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:56-364
               
               
               Cow position:chr21:42135776-42135436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-364
               
               
               Cow position:chr21:45921211-45920880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-366
               
               
               Cow position:chr21:33210046-33210369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-367
               
               
               Cow position:chr21:9416090-9416432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-367
               
               
               Cow position:chr21:15584562-15584239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:57-263
               
               
               Cow position:chr21:42913897-42913676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:57-280
               
               
               Cow position:chr21:10007792-10007555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:57-286
               
               
               Cow position:chr21:22718932-22718694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):42, 235

               
               
               Conread position:57-286
               
               
               Cow position:chr21:39450320-39450070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-286
               
               
               Cow position:chr21:39888895-39888660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:57-334
               
               
               Cow position:chr21:5426792-5427088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 42

               
               
               Conread position:57-338
               
               
               Cow position:chr21:15611000-15611292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:57-341
               
               
               Cow position:chr21:39401443-39401745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:57-346
               
               
               Cow position:chr21:21169646-21169336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:57-350
               
               
               Cow position:chr21:26244780-26245078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):126, 39

               
               
               Conread position:57-350
               
               
               Cow position:chr21:33562864-33563167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:58-276
               
               
               Cow position:chr21:28617440-28617671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:58-286
               
               
               Cow position:chr21:8351455-8351222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:58-300
               
               
               Cow position:chr21:37282159-37282405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:58-302
               
               
               Cow position:chr21:6764853-6764594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:58-328
               
               
               Cow position:chr21:29002312-29002011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-347
               
               
               Cow position:chr21:42841743-42841436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:58-350
               
               
               Cow position:chr21:6833902-6834212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:58-350
               
               
               Cow position:chr21:24858161-24858479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-350
               
               
               Cow position:chr21:46973276-46972987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:58-355
               
               
               Cow position:chr21:32454751-32455068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):54, 284

               
               
               Conread position:59-344
               
               
               Cow position:chr21:6051357-6051661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:59-350
               
               
               Cow position:chr21:6713674-6713359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:59-350
               
               
               Cow position:chr21:18850368-18850060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:59-350
               
               
               Cow position:chr21:20160534-20160840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:59-350
               
               
               Cow position:chr21:32339886-32339577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 183

               
               
               Conread position:59-351
               
               
               Cow position:chr21:33982958-33982644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 185

               
               
               Conread position:60-280
               
               
               Cow position:chr21:24130932-24131153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:60-326
               
               
               Cow position:chr21:44515126-44515404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:60-344
               
               
               Cow position:chr21:2927355-2927047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 223

               
               
               Conread position:60-350
               
               
               Cow position:chr21:27863668-27863350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):39, 313

               
               
               Conread position:60-365
               
               
               Cow position:chr21:36642759-36643070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 159

               
               
               Conread position:62-250
               
               
               Cow position:chr21:47009386-47009181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:62-286
               
               
               Cow position:chr21:10727134-10727366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:62-336
               
               
               Cow position:chr21:16187952-16187657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:62-350
               
               
               Cow position:chr21:18041989-18041703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:62-350
               
               
               Cow position:chr21:48291180-48290895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):162, 45

               
               
               Conread position:63-335
               
               
               Cow position:chr21:957521-957821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:63-350
               
               
               Cow position:chr21:27229940-27229631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:63-350
               
               
               Cow position:chr21:49700181-49699877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:63-351
               
               
               Cow position:chr21:26648151-26647850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:64-334
               
               
               Cow position:chr21:43357408-43357108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:65-184
               
               
               Cow position:chr21:17282560-17282684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:65-350
               
               
               Cow position:chr21:17183778-17184081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):59, 181

               
               
               Conread position:66-279
               
               
               Cow position:chr21:23311090-23310869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:69-352
               
               
               Cow position:chr21:12462110-12461799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:70-286
               
               
               Cow position:chr21:6102398-6102172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:70-288
               
               
               Cow position:chr21:2293854-2294074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:70-333
               
               
               Cow position:chr21:11250727-11251016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 179

               
               
               Conread position:70-366
               
               
               Cow position:chr21:28923978-28924289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:71-273
               
               
               Cow position:chr21:39809762-39809971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:71-338
               
               
               Cow position:chr21:20152810-20153108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:72-350
               
               
               Cow position:chr21:13089604-13089311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):51, 287

               
               
               Conread position:72-350
               
               
               Cow position:chr21:29978899-29978596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:72-361
               
               
               Cow position:chr21:12723020-12723326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:72-367
               
               
               Cow position:chr21:14452101-14452414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:78-337
               
               
               Cow position:chr21:34151450-34151736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 161

               
               
               Conread position:81-306
               
               
               Cow position:chr21:35569504-35569276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:81-341
               
               
               Cow position:chr21:46911-47195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:81-346
               
               
               Cow position:chr21:12301631-12301351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:81-364
               
               
               Cow position:chr21:2810271-2809985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:85-323
               
               
               Cow position:chr21:18414926-18415189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):6, 163

               
               
               Conread position:85-350
               
               
               Cow position:chr21:30222218-30222509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:96-286
               
               
               Cow position:chr21:46552211-46552014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:96-313
               
               
               Cow position:chr21:13519079-13519306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 144

               
               
               Conread position:96-352
               
               
               Cow position:chr21:35437579-35437323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:98-284
               
               
               Cow position:chr21:9980073-9979882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:98-350
               
               
               Cow position:chr21:2657710-2657972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:99-268
               
               
               Cow position:chr21:4568177-4568357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:99-351
               
               
               Cow position:chr21:10673023-10673285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:100-344
               
               
               Cow position:chr21:5464663-5464906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):131, 24

               
               
               Conread position:100-350
               
               
               Cow position:chr21:23980289-23980018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):25, 150

               
               
               Conread position:100-364
               
               
               Cow position:chr21:30835261-30835543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:101-347
               
               
               Cow position:chr21:20418791-20418521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:103-347
               
               
               Cow position:chr21:42022186-42022436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:104-350
               
               
               Cow position:chr21:8206669-8206934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 235

               
               
               Conread position:109-350
               
               
               Cow position:chr21:30250288-30250040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:111-350
               
               
               Cow position:chr21:22121426-22121667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:113-286
               
               
               Cow position:chr21:8527571-8527395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 122

               
               
               Conread position:117-313
               
               
               Cow position:chr21:33360122-33359917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):5, 108

               
               
               Conread position:121-350
               
               
               Cow position:chr21:47363827-47363570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:122-286
               
               
               Cow position:chr21:37014485-37014317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:122-347
               
               
               Cow position:chr21:22210326-22210085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 114

               
               
               Conread position:123-350
               
               
               Cow position:chr21:31090501-31090271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:124-272
               
               
               Cow position:chr21:1296211-1296062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:124-335
               
               
               Cow position:chr21:40432368-40432594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 114

               
               
               Conread position:125-350
               
               
               Cow position:chr21:7823298-7823528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:125-350
               
               
               Cow position:chr21:30218262-30218042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:126-350
               
               
               Cow position:chr21:27429388-27429614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 25

               
               
               Conread position:128-350
               
               
               Cow position:chr21:36909858-36910095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:132-350
               
               
               Cow position:chr21:1511219-1511453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:132-350
               
               
               Cow position:chr21:15544290-15544065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:147-352
               
               
               Cow position:chr21:38268098-38267896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:151-353
               
               
               Cow position:chr21:868979-868757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:153-350
               
               
               Cow position:chr21:28919576-28919365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:169-351
               
               
               Cow position:chr21:46132548-46132740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:177-350
               
               
               Cow position:chr21:31159386-31159560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:180-350
               
               
               Cow position:chr21:21907444-21907271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:186-350
               
               
               Cow position:chr21:28030279-28030452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:186-351
               
               
               Cow position:chr21:38720243-38720414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:186-353
               
               
               Cow position:chr21:13036909-13036739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:188-347
               
               
               Cow position:chr21:20183064-20183232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:195-350
               
               
               Cow position:chr21:36508241-36508398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:200-350
               
               
               Cow position:chr21:23460145-23460297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:204-350
               
               
               Cow position:chr21:742294-742441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:233-363
               
               
               Cow position:chr21:34483069-34482939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:50-187
               
               
               Cow position:chr22:5090485-5090622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:50-369
               
               
               Cow position:chr22:3987287-3987634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):49, 198

               
               
               Conread position:55-190
               
               
               Cow position:chr22:13242216-13242359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:55-202
               
               
               Cow position:chr22:17339983-17339834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-259
               
               
               Cow position:chr22:26106838-26107055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:55-288
               
               
               Cow position:chr22:6610574-6610325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 124

               
               
               Conread position:55-296
               
               
               Cow position:chr22:23833075-23833327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 59

               
               
               Conread position:55-314
               
               
               Cow position:chr22:14143326-14143054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:55-320
               
               
               Cow position:chr22:17993250-17992964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:55-330
               
               
               Cow position:chr22:31593081-31592779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-335
               
               
               Cow position:chr22:6960648-6960932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:55-342
               
               
               Cow position:chr22:26339540-26339843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:55-343
               
               
               Cow position:chr22:34398675-34398366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:55-346
               
               
               Cow position:chr22:1975392-1975702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-346
               
               
               Cow position:chr22:27431903-27431610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:55-347
               
               
               Cow position:chr22:19048025-19047722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):116, 29

               
               
               Conread position:55-347
               
               
               Cow position:chr22:34726452-34726758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):44, 119

               
               
               Conread position:55-349
               
               
               Cow position:chr22:24584263-24583973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:55-350
               
               
               Cow position:chr22:6493950-6494258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-350
               
               
               Cow position:chr22:15090520-15090839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-350
               
               
               Cow position:chr22:17295151-17294839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:55-350
               
               
               Cow position:chr22:24611296-24610998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:55-350
               
               
               Cow position:chr22:30049793-30049469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr22:32189059-32188757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:55-350
               
               
               Cow position:chr22:35753526-35753203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:55-353
               
               
               Cow position:chr22:1289739-1289429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-364
               
               
               Cow position:chr22:590122-590451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:55-364
               
               
               Cow position:chr22:26658835-26659154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-364
               
               
               Cow position:chr22:40071749-40072090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:56-164
               
               
               Cow position:chr22:28120572-28120688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-178
               
               
               Cow position:chr22:12381680-12381808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr22:4108958-4108826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr22:13720744-13720613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr22:34618514-34618642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:56-190
               
               
               Cow position:chr22:35902914-35902780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:56-193
               
               
               Cow position:chr22:11987436-11987293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr22:29013658-29013801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-200
               
               
               Cow position:chr22:2010580-2010730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr22:19376491-19376638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-203
               
               
               Cow position:chr22:5837013-5837161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-204
               
               
               Cow position:chr22:9278684-9278834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:56-208
               
               
               Cow position:chr22:28938125-28937960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-208
               
               
               Cow position:chr22:45106137-45105978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-214
               
               
               Cow position:chr22:11813936-11813780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-216
               
               
               Cow position:chr22:47582687-47582857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:56-218
               
               
               Cow position:chr22:34986321-34986157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:56-226
               
               
               Cow position:chr22:14602614-14602433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-236
               
               
               Cow position:chr22:2141595-2141783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-245
               
               
               Cow position:chr22:30689412-30689619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-257
               
               
               Cow position:chr22:39472595-39472382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-262
               
               
               Cow position:chr22:1822094-1821872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-266
               
               
               Cow position:chr22:31196716-31196505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 123

               
               
               Conread position:56-269
               
               
               Cow position:chr22:27401326-27401551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:56-271
               
               
               Cow position:chr22:14601295-14601512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):134, 40

               
               
               Conread position:56-273
               
               
               Cow position:chr22:25341801-25342026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-274
               
               
               Cow position:chr22:6360707-6360475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:56-274
               
               
               Cow position:chr22:26749269-26749033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:56-275
               
               
               Cow position:chr22:45271362-45271595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-276
               
               
               Cow position:chr22:2702009-2702244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:56-276
               
               
               Cow position:chr22:35533575-35533338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-277
               
               
               Cow position:chr22:11500559-11500793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-278
               
               
               Cow position:chr22:5467588-5467346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 64

               
               
               Conread position:56-280
               
               
               Cow position:chr22:41271210-41270984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:56-281
               
               
               Cow position:chr22:4043714-4043951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-281
               
               
               Cow position:chr22:33094342-33094582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):45, 190

               
               
               Conread position:56-284
               
               
               Cow position:chr22:12777802-12777570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-285
               
               
               Cow position:chr22:852810-853042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:56-286
               
               
               Cow position:chr22:295156-294911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-286
               
               
               Cow position:chr22:4990391-4990145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-286
               
               
               Cow position:chr22:5290624-5290872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 195

               
               
               Conread position:56-286
               
               
               Cow position:chr22:6092862-6092632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-286
               
               
               Cow position:chr22:10585920-10585681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:56-286
               
               
               Cow position:chr22:14376612-14376390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:56-287
               
               
               Cow position:chr22:16273411-16273664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-288
               
               
               Cow position:chr22:16057482-16057727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 190

               
               
               Conread position:56-288
               
               
               Cow position:chr22:22146007-22146257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 202

               
               
               Conread position:56-288
               
               
               Cow position:chr22:26490242-26490491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:56-288
               
               
               Cow position:chr22:36569761-36569527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:56-290
               
               
               Cow position:chr22:25206189-25205944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-291
               
               
               Cow position:chr22:6123115-6122876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:56-291
               
               
               Cow position:chr22:36539892-36539634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:56-314
               
               
               Cow position:chr22:27825617-27825900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:56-319
               
               
               Cow position:chr22:21567780-21568062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-333
               
               
               Cow position:chr22:7153671-7153961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 56

               
               
               Conread position:56-335
               
               
               Cow position:chr22:11257955-11257666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):30, 100

               
               
               Conread position:56-335
               
               
               Cow position:chr22:22222973-22223269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 185

               
               
               Conread position:56-337
               
               
               Cow position:chr22:43292120-43291818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-340
               
               
               Cow position:chr22:18196291-18196597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-340
               
               
               Cow position:chr22:31870469-31870170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:56-341
               
               
               Cow position:chr22:30954820-30955105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:56-342
               
               
               Cow position:chr22:30698960-30699270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-342
               
               
               Cow position:chr22:31194854-31195144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-342
               
               
               Cow position:chr22:34476220-34475911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:56-343
               
               
               Cow position:chr22:27818784-27819091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:56-344
               
               
               Cow position:chr22:534274-534590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-344
               
               
               Cow position:chr22:1609975-1609679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:56-344
               
               
               Cow position:chr22:2502618-2502916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:56-344
               
               
               Cow position:chr22:18126954-18126644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-344
               
               
               Cow position:chr22:28058262-28057959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:56-345
               
               
               Cow position:chr22:19787899-19787596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 240

               
               
               Conread position:56-346
               
               
               Cow position:chr22:3964966-3965279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-346
               
               
               Cow position:chr22:9977600-9977902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-346
               
               
               Cow position:chr22:10685307-10684998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:56-346
               
               
               Cow position:chr22:17950176-17949879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-347
               
               
               Cow position:chr22:5337817-5337505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:56-347
               
               
               Cow position:chr22:14691195-14690877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-347
               
               
               Cow position:chr22:25476844-25477140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr22:26184380-26184067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:56-347
               
               
               Cow position:chr22:34750458-34750767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-347
               
               
               Cow position:chr22:42612238-42612553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:56-348
               
               
               Cow position:chr22:24176093-24175801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 38

               
               
               Conread position:56-349
               
               
               Cow position:chr22:10683884-10683584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-349
               
               
               Cow position:chr22:13274252-13274575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 315

               
               
               Conread position:56-350
               
               
               Cow position:chr22:1590801-1591121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr22:2623734-2623422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:56-350
               
               
               Cow position:chr22:3253157-3252862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):127, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr22:3325362-3325685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:56-350
               
               
               Cow position:chr22:3842408-3842713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr22:3950022-3950349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 197

               
               
               Conread position:56-350
               
               
               Cow position:chr22:4017256-4017570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr22:4076118-4075790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 323

               
               
               Conread position:56-350
               
               
               Cow position:chr22:4645558-4645868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr22:5384436-5384749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-350
               
               
               Cow position:chr22:5596010-5595715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr22:6149605-6149295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:56-350
               
               
               Cow position:chr22:6754473-6754169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:56-350
               
               
               Cow position:chr22:7913258-7913558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr22:7967478-7967799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr22:8481428-8481741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr22:8733542-8733241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr22:8840366-8840702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr22:9127183-9127505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr22:10302791-10303112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-350
               
               
               Cow position:chr22:11130652-11130967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):68, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr22:11613202-11613521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr22:12572984-12573301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr22:12946384-12946085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr22:12968289-12967973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):68, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr22:13840918-13841236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr22:13861369-13861673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-350
               
               
               Cow position:chr22:14245644-14245352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):163, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr22:14366173-14365861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr22:14844351-14844657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-350
               
               
               Cow position:chr22:15490440-15490751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr22:15950596-15950289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:56-350
               
               
               Cow position:chr22:16044649-16044320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 324

               
               
               Conread position:56-350
               
               
               Cow position:chr22:17152460-17152774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-350
               
               
               Cow position:chr22:19775645-19775337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-350
               
               
               Cow position:chr22:21012171-21012481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr22:21355364-21355044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:56-350
               
               
               Cow position:chr22:22612893-22613202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr22:23176669-23176345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:56-350
               
               
               Cow position:chr22:23249932-23249630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr22:23856829-23857142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr22:25222122-25221803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr22:25237360-25237044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr22:25361271-25361581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr22:25629990-25629688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr22:25743171-25742852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr22:25943262-25943571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr22:26316254-26316552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr22:28071335-28071655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:56-350
               
               
               Cow position:chr22:28146465-28146773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:56-350
               
               
               Cow position:chr22:28665050-28665380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-350
               
               
               Cow position:chr22:29641891-29642205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 308

               
               
               Conread position:56-350
               
               
               Cow position:chr22:29955218-29954909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:56-350
               
               
               Cow position:chr22:31646275-31646589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr22:32651288-32651591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr22:32661293-32661605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr22:32892476-32892791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr22:34606371-34606687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr22:34894753-34895060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:56-350
               
               
               Cow position:chr22:37029822-37029511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr22:37145128-37145422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr22:37201638-37201945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:56-350
               
               
               Cow position:chr22:38940168-38939844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 274

               
               
               Conread position:56-350
               
               
               Cow position:chr22:39508253-39507944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-350
               
               
               Cow position:chr22:40048344-40048651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr22:40374387-40374705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-350
               
               
               Cow position:chr22:40386953-40387250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr22:41982934-41982625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr22:45513740-45513432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:56-351
               
               
               Cow position:chr22:644980-644671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:56-351
               
               
               Cow position:chr22:3960512-3960206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:56-351
               
               
               Cow position:chr22:13286225-13286547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-351
               
               
               Cow position:chr22:38980685-38980985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):129, 43

               
               
               Conread position:56-351
               
               
               Cow position:chr22:40349131-40349441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-351
               
               
               Cow position:chr22:41971376-41971056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:56-351
               
               
               Cow position:chr22:43812637-43812340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:56-352
               
               
               Cow position:chr22:6215773-6215457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:56-352
               
               
               Cow position:chr22:13769260-13769576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:56-353
               
               
               Cow position:chr22:1484643-1484962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 309

               
               
               Conread position:56-353
               
               
               Cow position:chr22:23854762-23855069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:56-353
               
               
               Cow position:chr22:38313683-38313378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-354
               
               
               Cow position:chr22:16620954-16621276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-355
               
               
               Cow position:chr22:10937052-10936749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-355
               
               
               Cow position:chr22:14179051-14178725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-361
               
               
               Cow position:chr22:30515033-30515366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-363
               
               
               Cow position:chr22:26134454-26134114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 319

               
               
               Conread position:56-364
               
               
               Cow position:chr22:10920083-10919742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 309

               
               
               Conread position:56-366
               
               
               Cow position:chr22:7164735-7165076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:56-366
               
               
               Cow position:chr22:10294831-10295150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):47, 58

               
               
               Conread position:56-366
               
               
               Cow position:chr22:21295944-21295610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-366
               
               
               Cow position:chr22:40121097-40120769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 283

               
               
               Conread position:56-367
               
               
               Cow position:chr22:25246690-25247025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):40, 180

               
               
               Conread position:56-369
               
               
               Cow position:chr22:16327286-16327611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:57-226
               
               
               Cow position:chr22:30472828-30473011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:57-229
               
               
               Cow position:chr22:3944956-3945143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:57-279
               
               
               Cow position:chr22:9520928-9521159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:57-286
               
               
               Cow position:chr22:46610999-46610758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 238

               
               
               Conread position:57-291
               
               
               Cow position:chr22:23403859-23403618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:57-319
               
               
               Cow position:chr22:14882328-14882050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:57-332
               
               
               Cow position:chr22:13849668-13849374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-347
               
               
               Cow position:chr22:16251785-16251479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-350
               
               
               Cow position:chr22:1326200-1326515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:57-350
               
               
               Cow position:chr22:17814010-17814329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:57-350
               
               
               Cow position:chr22:17852841-17852540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:57-350
               
               
               Cow position:chr22:22861130-22860816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:57-350
               
               
               Cow position:chr22:28351874-28351572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:57-352
               
               
               Cow position:chr22:27581227-27581538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:57-353
               
               
               Cow position:chr22:30483694-30484014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-364
               
               
               Cow position:chr22:10122170-10122492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:58-182
               
               
               Cow position:chr22:8303068-8302942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-182
               
               
               Cow position:chr22:36761413-36761538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:58-261
               
               
               Cow position:chr22:41417355-41417141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-277
               
               
               Cow position:chr22:30712534-30712774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 198

               
               
               Conread position:58-281
               
               
               Cow position:chr22:5042103-5042332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:58-285
               
               
               Cow position:chr22:1640526-1640278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 193

               
               
               Conread position:58-312
               
               
               Cow position:chr22:6622463-6622189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:58-347
               
               
               Cow position:chr22:10632698-10633008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:58-350
               
               
               Cow position:chr22:1309945-1309638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:58-350
               
               
               Cow position:chr22:3316911-3317217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:58-350
               
               
               Cow position:chr22:10339330-10339022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:58-350
               
               
               Cow position:chr22:13957867-13957547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-350
               
               
               Cow position:chr22:24066451-24066136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:58-350
               
               
               Cow position:chr22:27329101-27328796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:58-350
               
               
               Cow position:chr22:33448292-33447985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):101, 38

               
               
               Conread position:58-350
               
               
               Cow position:chr22:34712497-34712821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 313

               
               
               Conread position:59-191
               
               
               Cow position:chr22:30094029-30094165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:59-226
               
               
               Cow position:chr22:4026391-4026570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:59-248
               
               
               Cow position:chr22:19848612-19848408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:59-349
               
               
               Cow position:chr22:37324330-37324638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:59-350
               
               
               Cow position:chr22:2627360-2627676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:60-350
               
               
               Cow position:chr22:36633017-36633320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:60-352
               
               
               Cow position:chr22:11600818-11601130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 175

               
               
               Conread position:60-399
               
               
               Cow position:chr22:47555629-47555994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 48

               
               
               Conread position:61-208
               
               
               Cow position:chr22:28289871-28290015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:61-341
               
               
               Cow position:chr22:27577519-27577830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):38, 188

               
               
               Conread position:61-347
               
               
               Cow position:chr22:3533734-3534027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:62-350
               
               
               Cow position:chr22:44180380-44180689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:63-347
               
               
               Cow position:chr22:27047612-27047319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:64-239
               
               
               Cow position:chr22:27512374-27512186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:64-280
               
               
               Cow position:chr22:4974631-4974406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:64-291
               
               
               Cow position:chr22:41245034-41245276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:67-286
               
               
               Cow position:chr22:41829438-41829218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:67-350
               
               
               Cow position:chr22:17125374-17125678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):32, 297

               
               
               Conread position:67-350
               
               
               Cow position:chr22:18219102-18218817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):31, 183

               
               
               Conread position:68-347
               
               
               Cow position:chr22:8398022-8397734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 149

               
               
               Conread position:69-350
               
               
               Cow position:chr22:30269207-30269505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:70-274
               
               
               Cow position:chr22:1601978-1602201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:70-286
               
               
               Cow position:chr22:41853691-41853927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 233

               
               
               Conread position:70-325
               
               
               Cow position:chr22:3366992-3367258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:70-350
               
               
               Cow position:chr22:27322120-27322407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:70-351
               
               
               Cow position:chr22:9372310-9372618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:72-350
               
               
               Cow position:chr22:11458621-11458912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 167

               
               
               Conread position:72-350
               
               
               Cow position:chr22:41898652-41898350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 181

               
               
               Conread position:76-350
               
               
               Cow position:chr22:2523763-2524060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 89

               
               
               Conread position:77-346
               
               
               Cow position:chr22:10420833-10421126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:77-350
               
               
               Cow position:chr22:14924927-14924635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:78-350
               
               
               Cow position:chr22:22907996-22908282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:81-350
               
               
               Cow position:chr22:12315617-12315907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):18, 164

               
               
               Conread position:81-350
               
               
               Cow position:chr22:21530545-21530262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:84-276
               
               
               Cow position:chr22:12598893-12599100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:84-350
               
               
               Cow position:chr22:4372853-4373139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 6

               
               
               Conread position:85-366
               
               
               Cow position:chr22:18021215-18020921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 73

               
               
               Conread position:87-350
               
               
               Cow position:chr22:36433158-36432876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:88-219
               
               
               Cow position:chr22:3541907-3541765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:89-313
               
               
               Cow position:chr22:16822917-16823159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 60

               
               
               Conread position:91-350
               
               
               Cow position:chr22:12313241-12313520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:96-343
               
               
               Cow position:chr22:33386681-33386421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:96-350
               
               
               Cow position:chr22:877337-877611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:100-235
               
               
               Cow position:chr22:999945-1000082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:100-280
               
               
               Cow position:chr22:10678155-10677973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:100-350
               
               
               Cow position:chr22:12388918-12389196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 6

               
               
               Conread position:100-350
               
               
               Cow position:chr22:32698586-32698856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 264

               
               
               Conread position:100-364
               
               
               Cow position:chr22:21205175-21205434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 50

               
               
               Conread position:100-367
               
               
               Cow position:chr22:4583385-4583675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:101-350
               
               
               Cow position:chr22:46568054-46567797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:103-352
               
               
               Cow position:chr22:24628821-24628559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:103-355
               
               
               Cow position:chr22:6097198-6096915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:104-336
               
               
               Cow position:chr22:27740718-27740973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:104-343
               
               
               Cow position:chr22:27835364-27835624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:105-350
               
               
               Cow position:chr22:23122191-23121906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):21, 273

               
               
               Conread position:106-350
               
               
               Cow position:chr22:32895054-32895314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:107-344
               
               
               Cow position:chr22:10292798-10293042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):50, 141

               
               
               Conread position:108-350
               
               
               Cow position:chr22:40789406-40789662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:109-350
               
               
               Cow position:chr22:26969617-26969886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:111-319
               
               
               Cow position:chr22:19173536-19173760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:111-329
               
               
               Cow position:chr22:3241859-3241627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:113-350
               
               
               Cow position:chr22:8090685-8090435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:114-346
               
               
               Cow position:chr22:43131708-43131466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:119-350
               
               
               Cow position:chr22:22553388-22553164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 157

               
               
               Conread position:122-350
               
               
               Cow position:chr22:15668623-15668379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:122-350
               
               
               Cow position:chr22:45845997-45846239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:123-350
               
               
               Cow position:chr22:2912730-2912494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:123-355
               
               
               Cow position:chr22:1563398-1563151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):53, 35

               
               
               Conread position:124-342
               
               
               Cow position:chr22:26506871-26506648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:125-344
               
               
               Cow position:chr22:14372039-14372261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:126-364
               
               
               Cow position:chr22:25539846-25540112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:129-346
               
               
               Cow position:chr22:34735726-34735957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:130-344
               
               
               Cow position:chr22:31153815-31154045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:135-350
               
               
               Cow position:chr22:31599314-31599528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:135-350
               
               
               Cow position:chr22:35029138-35029365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:159-352
               
               
               Cow position:chr22:12892479-12892267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:161-364
               
               
               Cow position:chr22:14006080-14006289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:163-350
               
               
               Cow position:chr22:26017841-26017649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:163-364
               
               
               Cow position:chr22:13878085-13878290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:179-350
               
               
               Cow position:chr22:6936179-6936353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):99, 57

               
               
               Conread position:186-343
               
               
               Cow position:chr22:24336451-24336617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:186-346
               
               
               Cow position:chr22:530643-530485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):129, 42

               
               
               Conread position:186-350
               
               
               Cow position:chr22:9597656-9597483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr22:10285891-10286067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:186-350
               
               
               Cow position:chr22:10553761-10553588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:186-350
               
               
               Cow position:chr22:26122821-26122994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:186-350
               
               
               Cow position:chr22:42617922-42618097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:187-350
               
               
               Cow position:chr22:13222037-13222214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:188-350
               
               
               Cow position:chr22:12678494-12678325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:189-351
               
               
               Cow position:chr22:29185681-29185510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:190-350
               
               
               Cow position:chr22:28704112-28704281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:215-350
               
               
               Cow position:chr22:3945333-3945465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:49-366
               
               
               Cow position:chr23:10415246-10414906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:50-245
               
               
               Cow position:chr23:587175-587388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:50-351
               
               
               Cow position:chr23:29459309-29458994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:51-350
               
               
               Cow position:chr23:1924054-1923734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:52-345
               
               
               Cow position:chr23:18296589-18296904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 201

               
               
               Conread position:54-364
               
               
               Cow position:chr23:21452949-21452611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):45, 195

               
               
               Conread position:55-170
               
               
               Cow position:chr23:19295155-19295040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:55-191
               
               
               Cow position:chr23:4421192-4421056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:55-247
               
               
               Cow position:chr23:12896816-12896615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):44, 151

               
               
               Conread position:55-273
               
               
               Cow position:chr23:3918313-3918080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 43

               
               
               Conread position:55-280
               
               
               Cow position:chr23:4338822-4338588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:55-280
               
               
               Cow position:chr23:15287349-15287115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:55-281
               
               
               Cow position:chr23:4579250-4579015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:55-327
               
               
               Cow position:chr23:27563924-27563621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-350
               
               
               Cow position:chr23:534014-534330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-350
               
               
               Cow position:chr23:6592909-6592605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:55-350
               
               
               Cow position:chr23:11380473-11380149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:55-350
               
               
               Cow position:chr23:13555643-13555337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:55-350
               
               
               Cow position:chr23:16700254-16699940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:55-350
               
               
               Cow position:chr23:35362988-35362677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 110

               
               
               Conread position:55-353
               
               
               Cow position:chr23:10085398-10085081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:56-175
               
               
               Cow position:chr23:7937754-7937636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-177
               
               
               Cow position:chr23:6767676-6767801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-181
               
               
               Cow position:chr23:35926380-35926507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr23:39793240-39793366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:56-185
               
               
               Cow position:chr23:28118317-28118181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr23:5870397-5870256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr23:1991641-1991502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr23:38414172-38414027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:56-214
               
               
               Cow position:chr23:7392496-7392334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:56-216
               
               
               Cow position:chr23:23470729-23470895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-241
               
               
               Cow position:chr23:7175406-7175602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-259
               
               
               Cow position:chr23:406375-406170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-259
               
               
               Cow position:chr23:37992775-37992983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:56-263
               
               
               Cow position:chr23:19538208-19537988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 166

               
               
               Conread position:56-267
               
               
               Cow position:chr23:32961583-32961353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr23:5151774-5152012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-278
               
               
               Cow position:chr23:1068527-1068295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:56-278
               
               
               Cow position:chr23:27862117-27862350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-279
               
               
               Cow position:chr23:1647414-1647640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:56-280
               
               
               Cow position:chr23:15056856-15056619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-280
               
               
               Cow position:chr23:19979161-19978931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:56-280
               
               
               Cow position:chr23:40502727-40502493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):56, 148

               
               
               Conread position:56-281
               
               
               Cow position:chr23:1321408-1321184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-284
               
               
               Cow position:chr23:13520243-13520475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-286
               
               
               Cow position:chr23:416946-417175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:56-286
               
               
               Cow position:chr23:1670702-1670930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:56-286
               
               
               Cow position:chr23:2055488-2055732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-286
               
               
               Cow position:chr23:4608596-4608354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:56-286
               
               
               Cow position:chr23:7402492-7402729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:56-286
               
               
               Cow position:chr23:9652681-9652456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):137, 19

               
               
               Conread position:56-287
               
               
               Cow position:chr23:8959382-8959625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 239

               
               
               Conread position:56-288
               
               
               Cow position:chr23:9595042-9594800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:56-288
               
               
               Cow position:chr23:40778048-40778295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-289
               
               
               Cow position:chr23:8006026-8006275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr23:36129116-36128848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 178

               
               
               Conread position:56-327
               
               
               Cow position:chr23:26319203-26319479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):44, 113

               
               
               Conread position:56-332
               
               
               Cow position:chr23:29471333-29471055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-335
               
               
               Cow position:chr23:29242732-29243028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:56-337
               
               
               Cow position:chr23:1536113-1536409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-337
               
               
               Cow position:chr23:20781610-20781898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:56-339
               
               
               Cow position:chr23:39778199-39778493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-341
               
               
               Cow position:chr23:10852838-10853139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):70, 248

               
               
               Conread position:56-342
               
               
               Cow position:chr23:12050151-12050451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:56-342
               
               
               Cow position:chr23:20744803-20744498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:56-342
               
               
               Cow position:chr23:39806658-39806964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:56-343
               
               
               Cow position:chr23:11129020-11129329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-344
               
               
               Cow position:chr23:1254463-1254784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):53, 199

               
               
               Conread position:56-344
               
               
               Cow position:chr23:4972569-4972862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):27, 133

               
               
               Conread position:56-344
               
               
               Cow position:chr23:20388853-20388554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:56-344
               
               
               Cow position:chr23:22804509-22804821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):38, 182

               
               
               Conread position:56-344
               
               
               Cow position:chr23:25378441-25378743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-345
               
               
               Cow position:chr23:4562669-4562983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-345
               
               
               Cow position:chr23:5603485-5603187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-345
               
               
               Cow position:chr23:14838950-14838647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-346
               
               
               Cow position:chr23:1290080-1290396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-346
               
               
               Cow position:chr23:13599127-13599439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-346
               
               
               Cow position:chr23:19002283-19001970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):57, 203

               
               
               Conread position:56-346
               
               
               Cow position:chr23:22530632-22530340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-347
               
               
               Cow position:chr23:25669284-25668992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-349
               
               
               Cow position:chr23:20752798-20753107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-349
               
               
               Cow position:chr23:41590125-41589822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-350
               
               
               Cow position:chr23:186957-187280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr23:1883179-1883499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr23:2502063-2501751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr23:5162218-5162532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:56-350
               
               
               Cow position:chr23:5617362-5617675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr23:5706786-5707096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr23:5723329-5723637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 293

               
               
               Conread position:56-350
               
               
               Cow position:chr23:6367391-6367706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 204

               
               
               Conread position:56-350
               
               
               Cow position:chr23:7596545-7596251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr23:8698229-8698523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr23:9599288-9599596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr23:9734200-9734511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr23:11315231-11314931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr23:13511519-13511827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:56-350
               
               
               Cow position:chr23:14739234-14739551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr23:15742885-15743193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:56-350
               
               
               Cow position:chr23:16583123-16582808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr23:22298231-22297936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:56-350
               
               
               Cow position:chr23:26632585-26632907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr23:27544618-27544930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr23:29345974-29345666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-350
               
               
               Cow position:chr23:30662842-30662536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-350
               
               
               Cow position:chr23:37065623-37065952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr23:37224280-37223972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr23:38455399-38455076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:56-350
               
               
               Cow position:chr23:39775516-39775828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr23:40781112-40781431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-351
               
               
               Cow position:chr23:1398252-1397936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-351
               
               
               Cow position:chr23:25864898-25864593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-351
               
               
               Cow position:chr23:38208496-38208829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-352
               
               
               Cow position:chr23:4529106-4528774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 48

               
               
               Conread position:56-353
               
               
               Cow position:chr23:1878085-1877790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-353
               
               
               Cow position:chr23:10554226-10553904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-353
               
               
               Cow position:chr23:17404636-17404944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:56-353
               
               
               Cow position:chr23:29034099-29034420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-355
               
               
               Cow position:chr23:24867088-24867417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-364
               
               
               Cow position:chr23:20195132-20194808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-364
               
               
               Cow position:chr23:21336703-21336366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-364
               
               
               Cow position:chr23:33601738-33601420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:57-193
               
               
               Cow position:chr23:4523192-4523049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-280
               
               
               Cow position:chr23:3247375-3247609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:57-286
               
               
               Cow position:chr23:1803577-1803814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):42, 112

               
               
               Conread position:57-286
               
               
               Cow position:chr23:26795117-26794885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:57-288
               
               
               Cow position:chr23:3955208-3955448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:57-340
               
               
               Cow position:chr23:18322633-18322334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 175

               
               
               Conread position:57-344
               
               
               Cow position:chr23:1885389-1885076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:57-344
               
               
               Cow position:chr23:14164613-14164298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:57-346
               
               
               Cow position:chr23:20435264-20434965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:57-350
               
               
               Cow position:chr23:6995187-6994880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:57-350
               
               
               Cow position:chr23:7845076-7845396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):42, 112

               
               
               Conread position:57-350
               
               
               Cow position:chr23:11045271-11045589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):53, 99

               
               
               Conread position:57-350
               
               
               Cow position:chr23:11434469-11434159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:57-350
               
               
               Cow position:chr23:24704066-24704393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-350
               
               
               Cow position:chr23:40648941-40648630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:57-352
               
               
               Cow position:chr23:20057080-20056777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-364
               
               
               Cow position:chr23:344391-344070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:58-213
               
               
               Cow position:chr23:14896016-14895854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:58-244
               
               
               Cow position:chr23:11080869-11081064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 81

               
               
               Conread position:58-281
               
               
               Cow position:chr23:1337517-1337280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 182

               
               
               Conread position:58-290
               
               
               Cow position:chr23:670408-670652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:58-347
               
               
               Cow position:chr23:22396658-22396347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 184

               
               
               Conread position:58-350
               
               
               Cow position:chr23:18402498-18402188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:58-350
               
               
               Cow position:chr23:21764705-21765022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-350
               
               
               Cow position:chr23:36309213-36309522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:59-277
               
               
               Cow position:chr23:36076033-36075797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:59-320
               
               
               Cow position:chr23:24509490-24509766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:59-325
               
               
               Cow position:chr23:16563631-16563916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:59-350
               
               
               Cow position:chr23:22399190-22399508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:60-280
               
               
               Cow position:chr23:7484869-7485091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:60-338
               
               
               Cow position:chr23:15710288-15709981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:60-342
               
               
               Cow position:chr23:18698235-18697931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:60-344
               
               
               Cow position:chr23:3262709-3262401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 32

               
               
               Conread position:60-344
               
               
               Cow position:chr23:39752904-39753211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:60-350
               
               
               Cow position:chr23:1742147-1742456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:60-352
               
               
               Cow position:chr23:23409536-23409837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:60-366
               
               
               Cow position:chr23:26986484-26986151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:61-367
               
               
               Cow position:chr23:1776840-1776523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:62-281
               
               
               Cow position:chr23:41285719-41285943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:62-286
               
               
               Cow position:chr23:33711558-33711788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:62-287
               
               
               Cow position:chr23:19758831-19758599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:63-190
               
               
               Cow position:chr23:39309322-39309189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:63-276
               
               
               Cow position:chr23:4942310-4942092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:63-277
               
               
               Cow position:chr23:22674646-22674416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:63-280
               
               
               Cow position:chr23:28053070-28053292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:63-285
               
               
               Cow position:chr23:28206404-28206624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:63-335
               
               
               Cow position:chr23:27996926-27997216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 178

               
               
               Conread position:64-342
               
               
               Cow position:chr23:10014329-10014624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:64-349
               
               
               Cow position:chr23:33940361-33940056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:65-366
               
               
               Cow position:chr23:2371170-2371481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:70-192
               
               
               Cow position:chr23:30656375-30656249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:70-286
               
               
               Cow position:chr23:40443665-40443888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:70-295
               
               
               Cow position:chr23:39028584-39028816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:72-340
               
               
               Cow position:chr23:30999377-30999657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 95

               
               
               Conread position:73-326
               
               
               Cow position:chr23:4968721-4968445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:73-349
               
               
               Cow position:chr23:38973649-38973949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:74-350
               
               
               Cow position:chr23:5426231-5426536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:76-337
               
               
               Cow position:chr23:19371265-19370985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 89

               
               
               Conread position:76-362
               
               
               Cow position:chr23:25358545-25358829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:88-367
               
               
               Cow position:chr23:1759089-1759365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:90-350
               
               
               Cow position:chr23:3282295-3282019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:96-350
               
               
               Cow position:chr23:4104232-4104497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:97-364
               
               
               Cow position:chr23:26949027-26949315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):29, 144

               
               
               Conread position:98-286
               
               
               Cow position:chr23:1921397-1921199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:99-350
               
               
               Cow position:chr23:4996268-4995994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:100-346
               
               
               Cow position:chr23:1767661-1767927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:100-350
               
               
               Cow position:chr23:1636108-1636370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):5, 162

               
               
               Conread position:100-350
               
               
               Cow position:chr23:4726621-4726893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):71, 254

               
               
               Conread position:100-350
               
               
               Cow position:chr23:34356468-34356743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:101-350
               
               
               Cow position:chr23:7574800-7574523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 259

               
               
               Conread position:103-288
               
               
               Cow position:chr23:4804301-4804107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:104-286
               
               
               Cow position:chr23:39083294-39083479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:104-349
               
               
               Cow position:chr23:33622317-33622049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 263

               
               
               Conread position:105-286
               
               
               Cow position:chr23:23113865-23114060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):21, 192

               
               
               Conread position:108-347
               
               
               Cow position:chr23:19774613-19774868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:109-346
               
               
               Cow position:chr23:12334049-12334308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:110-367
               
               
               Cow position:chr23:18416207-18415937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):12, 128

               
               
               Conread position:111-331
               
               
               Cow position:chr23:4329839-4329591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:111-350
               
               
               Cow position:chr23:4966662-4966921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:119-350
               
               
               Cow position:chr23:5436792-5436541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:123-350
               
               
               Cow position:chr23:37894-38130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):148, 87

               
               
               Conread position:123-350
               
               
               Cow position:chr23:1655747-1655996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:123-350
               
               
               Cow position:chr23:4335937-4336169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:123-350
               
               
               Cow position:chr23:24984313-24984068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:128-350
               
               
               Cow position:chr23:22414431-22414202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):99, 23

               
               
               Conread position:130-365
               
               
               Cow position:chr23:30950824-30951074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:149-350
               
               
               Cow position:chr23:307340-307557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):37, 212

               
               
               Conread position:151-350
               
               
               Cow position:chr23:306409-306624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 210

               
               
               Conread position:156-347
               
               
               Cow position:chr23:6035331-6035530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:158-359
               
               
               Cow position:chr23:39275781-39276009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:182-350
               
               
               Cow position:chr23:20002180-20002357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:183-350
               
               
               Cow position:chr23:2160711-2160537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:183-364
               
               
               Cow position:chr23:40637182-40637375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 137

               
               
               Conread position:186-350
               
               
               Cow position:chr23:4795102-4795272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:186-351
               
               
               Cow position:chr23:35247295-35247472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:186-366
               
               
               Cow position:chr23:3522680-3522853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:195-350
               
               
               Cow position:chr23:35503723-35503875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:201-350
               
               
               Cow position:chr23:3244522-3244367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:206-350
               
               
               Cow position:chr23:28529998-28529852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:234-350
               
               
               Cow position:chr23:30655833-30655711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:49-349
               
               
               Cow position:chr24:32158518-32158202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:54-350
               
               
               Cow position:chr24:201877-201561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:55-197
               
               
               Cow position:chr24:33238789-33238642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 131

               
               
               Conread position:55-280
               
               
               Cow position:chr24:36555071-36554837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:55-287
               
               
               Cow position:chr24:27341265-27341017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:55-332
               
               
               Cow position:chr24:7913757-7914064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 196

               
               
               Conread position:55-337
               
               
               Cow position:chr24:30545097-30544803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 55

               
               
               Conread position:55-338
               
               
               Cow position:chr24:20024366-20024675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 184

               
               
               Conread position:55-342
               
               
               Cow position:chr24:20874435-20874749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-346
               
               
               Cow position:chr24:27874363-27874655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:55-347
               
               
               Cow position:chr24:24755208-24755520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 86

               
               
               Conread position:55-350
               
               
               Cow position:chr24:11119041-11119353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:55-350
               
               
               Cow position:chr24:17294428-17294123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:55-350
               
               
               Cow position:chr24:18741812-18741496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:55-350
               
               
               Cow position:chr24:19535490-19535181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):5, 63

               
               
               Conread position:55-350
               
               
               Cow position:chr24:29170724-29171037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 184

               
               
               Conread position:55-350
               
               
               Cow position:chr24:35150288-35150594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:55-350
               
               
               Cow position:chr24:43364122-43364434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:55-353
               
               
               Cow position:chr24:32370151-32369836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):135, 44

               
               
               Conread position:55-353
               
               
               Cow position:chr24:39440798-39440490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:55-364
               
               
               Cow position:chr24:43200515-43200184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:56-170
               
               
               Cow position:chr24:11874873-11874754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-186
               
               
               Cow position:chr24:20923356-20923480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr24:11006975-11007117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr24:27543716-27543579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-193
               
               
               Cow position:chr24:39493057-39493195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-194
               
               
               Cow position:chr24:11064615-11064759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-194
               
               
               Cow position:chr24:28600848-28600713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-205
               
               
               Cow position:chr24:2730810-2730651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-220
               
               
               Cow position:chr24:20970032-20969862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 42

               
               
               Conread position:56-252
               
               
               Cow position:chr24:40055962-40055762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:56-263
               
               
               Cow position:chr24:21860461-21860243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-264
               
               
               Cow position:chr24:27207435-27207215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-267
               
               
               Cow position:chr24:11876643-11876871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-268
               
               
               Cow position:chr24:5151993-5152220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 213

               
               
               Conread position:56-269
               
               
               Cow position:chr24:6161087-6160860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:56-271
               
               
               Cow position:chr24:27941248-27941026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:56-273
               
               
               Cow position:chr24:24137091-24136872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:56-276
               
               
               Cow position:chr24:27719993-27719768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:56-277
               
               
               Cow position:chr24:3152817-3152587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-277
               
               
               Cow position:chr24:36486300-36486072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-279
               
               
               Cow position:chr24:34315117-34315351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-280
               
               
               Cow position:chr24:211741-211983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-280
               
               
               Cow position:chr24:16625741-16625490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr24:17363889-17363652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:56-280
               
               
               Cow position:chr24:30177996-30178237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 97

               
               
               Conread position:56-280
               
               
               Cow position:chr24:42007505-42007736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-280
               
               
               Cow position:chr24:44041249-44041009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:56-281
               
               
               Cow position:chr24:28353911-28354152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-285
               
               
               Cow position:chr24:27039798-27040048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 220

               
               
               Conread position:56-286
               
               
               Cow position:chr24:18243705-18243466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:56-286
               
               
               Cow position:chr24:30484184-30483947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):136, 43

               
               
               Conread position:56-286
               
               
               Cow position:chr24:34564886-34565124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:56-286
               
               
               Cow position:chr24:35794980-35794734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-286
               
               
               Cow position:chr24:35985959-35985729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:56-286
               
               
               Cow position:chr24:39219087-39218839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:56-288
               
               
               Cow position:chr24:7917609-7917357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-288
               
               
               Cow position:chr24:15473115-15473362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-288
               
               
               Cow position:chr24:18405547-18405308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):119, 6

               
               
               Conread position:56-288
               
               
               Cow position:chr24:35073852-35074097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 214

               
               
               Conread position:56-291
               
               
               Cow position:chr24:32124882-32124629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:56-314
               
               
               Cow position:chr24:17407149-17407428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr24:18734595-18734331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:56-314
               
               
               Cow position:chr24:19658308-19658575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 139

               
               
               Conread position:56-327
               
               
               Cow position:chr24:41985736-41986048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 180

               
               
               Conread position:56-330
               
               
               Cow position:chr24:29596056-29595753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:56-337
               
               
               Cow position:chr24:30229228-30229536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):40, 196

               
               
               Conread position:56-338
               
               
               Cow position:chr24:42103134-42103430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-342
               
               
               Cow position:chr24:19769258-19769557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-344
               
               
               Cow position:chr24:3493652-3493954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-344
               
               
               Cow position:chr24:17104806-17104500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-344
               
               
               Cow position:chr24:27290635-27290941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):47, 60

               
               
               Conread position:56-344
               
               
               Cow position:chr24:29781921-29782231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:56-346
               
               
               Cow position:chr24:3430495-3430805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:56-346
               
               
               Cow position:chr24:29679551-29679241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-346
               
               
               Cow position:chr24:33724091-33723773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-347
               
               
               Cow position:chr24:27267395-27267687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-347
               
               
               Cow position:chr24:39350447-39350143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:56-348
               
               
               Cow position:chr24:43635194-43635500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-349
               
               
               Cow position:chr24:6508004-6507697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 296

               
               
               Conread position:56-349
               
               
               Cow position:chr24:41068028-41068334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-350
               
               
               Cow position:chr24:814505-814193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:56-350
               
               
               Cow position:chr24:1269564-1269859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr24:2096129-2095806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr24:3165581-3165894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr24:8886676-8886986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr24:11886917-11887233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr24:15246875-15246567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr24:16268344-16268053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr24:16994653-16994956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr24:17955688-17955369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):15, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr24:18025212-18024898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr24:18331496-18331796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:56-350
               
               
               Cow position:chr24:18374534-18374844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr24:20225497-20225811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr24:24250492-24250798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr24:25424823-25425106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 165

               
               
               Conread position:56-350
               
               
               Cow position:chr24:25677794-25678098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 147

               
               
               Conread position:56-350
               
               
               Cow position:chr24:26732207-26732525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:56-350
               
               
               Cow position:chr24:27052735-27052422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:56-350
               
               
               Cow position:chr24:27844760-27844452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:56-350
               
               
               Cow position:chr24:27906194-27906513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-350
               
               
               Cow position:chr24:28062705-28063023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr24:28303589-28303279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):46, 91

               
               
               Conread position:56-350
               
               
               Cow position:chr24:28690460-28690760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr24:28699817-28700126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 158

               
               
               Conread position:56-350
               
               
               Cow position:chr24:29063886-29063583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:56-350
               
               
               Cow position:chr24:29389006-29389309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-350
               
               
               Cow position:chr24:29673279-29673597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 306

               
               
               Conread position:56-350
               
               
               Cow position:chr24:31159389-31159691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr24:32054432-32054733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr24:33153542-33153852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-350
               
               
               Cow position:chr24:34742509-34742829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:56-350
               
               
               Cow position:chr24:36404388-36404068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr24:39483233-39483552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr24:40129882-40130205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-350
               
               
               Cow position:chr24:43028566-43028254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr24:44054382-44054092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-351
               
               
               Cow position:chr24:11839938-11840263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-351
               
               
               Cow position:chr24:27608338-27608030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-351
               
               
               Cow position:chr24:31816345-31816655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-351
               
               
               Cow position:chr24:32205034-32204718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-352
               
               
               Cow position:chr24:41980905-41980583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-359
               
               
               Cow position:chr24:17311449-17311137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-359
               
               
               Cow position:chr24:27748409-27748725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-359
               
               
               Cow position:chr24:42825738-42825419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-363
               
               
               Cow position:chr24:17860491-17860169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-363
               
               
               Cow position:chr24:33372310-33372642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:56-364
               
               
               Cow position:chr24:28553785-28553474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:56-366
               
               
               Cow position:chr24:33944167-33944492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:57-191
               
               
               Cow position:chr24:30776907-30776765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-222
               
               
               Cow position:chr24:33730615-33730783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:57-226
               
               
               Cow position:chr24:21264750-21264565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:57-337
               
               
               Cow position:chr24:43432562-43432853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):126, 34

               
               
               Conread position:57-346
               
               
               Cow position:chr24:18390528-18390233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:57-348
               
               
               Cow position:chr24:38811683-38811397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 54

               
               
               Conread position:57-350
               
               
               Cow position:chr24:12851491-12851781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:57-350
               
               
               Cow position:chr24:15861840-15861518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-350
               
               
               Cow position:chr24:20942930-20943237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:57-350
               
               
               Cow position:chr24:27824225-27824538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:57-350
               
               
               Cow position:chr24:31378516-31378825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr24:40849919-40850227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:57-351
               
               
               Cow position:chr24:6450275-6450567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):126, 39

               
               
               Conread position:57-351
               
               
               Cow position:chr24:31324041-31324362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:57-353
               
               
               Cow position:chr24:15057163-15057474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:57-364
               
               
               Cow position:chr24:39850118-39849799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:58-220
               
               
               Cow position:chr24:18324378-18324559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:58-277
               
               
               Cow position:chr24:27967842-27968077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:58-309
               
               
               Cow position:chr24:6487682-6487950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:58-319
               
               
               Cow position:chr24:33222178-33221895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:58-320
               
               
               Cow position:chr24:37650432-37650720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:58-332
               
               
               Cow position:chr24:38814733-38815025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:58-349
               
               
               Cow position:chr24:32759002-32758688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:58-350
               
               
               Cow position:chr24:19466172-19465842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 324

               
               
               Conread position:58-350
               
               
               Cow position:chr24:33098726-33098397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:58-350
               
               
               Cow position:chr24:34532885-34533196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:59-276
               
               
               Cow position:chr24:40184386-40184616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:59-346
               
               
               Cow position:chr24:41755625-41755934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:60-234
               
               
               Cow position:chr24:38347444-38347637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:60-276
               
               
               Cow position:chr24:18695385-18695611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 188

               
               
               Conread position:60-288
               
               
               Cow position:chr24:25194030-25194269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:60-350
               
               
               Cow position:chr24:16645560-16645245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:62-279
               
               
               Cow position:chr24:34410423-34410637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:62-350
               
               
               Cow position:chr24:30235635-30235946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:63-180
               
               
               Cow position:chr24:6742082-6741958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:64-288
               
               
               Cow position:chr24:250808-250574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:66-352
               
               
               Cow position:chr24:31359092-31359398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:67-350
               
               
               Cow position:chr24:28327312-28327005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:69-286
               
               
               Cow position:chr24:10012545-10012753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:69-286
               
               
               Cow position:chr24:21918445-21918227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:70-225
               
               
               Cow position:chr24:31388308-31388474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 127

               
               
               Conread position:70-286
               
               
               Cow position:chr24:10841442-10841206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 233

               
               
               Conread position:70-351
               
               
               Cow position:chr24:24457473-24457173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 177

               
               
               Conread position:72-337
               
               
               Cow position:chr24:21519215-21519490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:74-350
               
               
               Cow position:chr24:6102600-6102903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:75-350
               
               
               Cow position:chr24:16509751-16510053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:76-350
               
               
               Cow position:chr24:19261572-19261302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:76-350
               
               
               Cow position:chr24:34396394-34396103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):22, 87

               
               
               Conread position:78-351
               
               
               Cow position:chr24:33465819-33465544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:79-350
               
               
               Cow position:chr24:32070753-32071037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:80-350
               
               
               Cow position:chr24:15373193-15373481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:81-350
               
               
               Cow position:chr24:22079241-22079535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 289

               
               
               Conread position:84-286
               
               
               Cow position:chr24:28253494-28253708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:88-350
               
               
               Cow position:chr24:352813-352531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:97-364
               
               
               Cow position:chr24:18970703-18970416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):84, 135

               
               
               Conread position:98-342
               
               
               Cow position:chr24:20801541-20801278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 124

               
               
               Conread position:98-344
               
               
               Cow position:chr24:37945828-37945560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:100-277
               
               
               Cow position:chr24:885878-885695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:100-330
               
               
               Cow position:chr24:14171889-14171633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:100-351
               
               
               Cow position:chr24:15347399-15347667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):5, 75

               
               
               Conread position:100-352
               
               
               Cow position:chr24:17434416-17434688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:101-346
               
               
               Cow position:chr24:16089042-16089300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:103-340
               
               
               Cow position:chr24:39807947-39808194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):5, 67

               
               
               Conread position:103-350
               
               
               Cow position:chr24:21606853-21606604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:104-272
               
               
               Cow position:chr24:30226749-30226928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:104-347
               
               
               Cow position:chr24:42877061-42876818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:104-350
               
               
               Cow position:chr24:17833004-17832745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):22, 5

               
               
               Conread position:107-286
               
               
               Cow position:chr24:19800660-19800848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 185

               
               
               Conread position:108-350
               
               
               Cow position:chr24:41423422-41423678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:109-344
               
               
               Cow position:chr24:18355036-18355278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:109-350
               
               
               Cow position:chr24:41405731-41405970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:113-350
               
               
               Cow position:chr24:16895618-16895361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:113-369
               
               
               Cow position:chr24:18017047-18017321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:118-344
               
               
               Cow position:chr24:24061976-24061734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 194

               
               
               Conread position:121-346
               
               
               Cow position:chr24:35576706-35576468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):60, 118

               
               
               Conread position:123-344
               
               
               Cow position:chr24:23187086-23186849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:123-346
               
               
               Cow position:chr24:6912520-6912292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:123-350
               
               
               Cow position:chr24:18357222-18356976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:123-350
               
               
               Cow position:chr24:19736497-19736258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:124-330
               
               
               Cow position:chr24:18999879-19000104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:135-350
               
               
               Cow position:chr24:7777773-7777553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:139-350
               
               
               Cow position:chr24:38841557-38841346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 91

               
               
               Conread position:139-351
               
               
               Cow position:chr24:17752266-17752035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:152-350
               
               
               Cow position:chr24:34390156-34390352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:179-344
               
               
               Cow position:chr24:28045647-28045829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:179-346
               
               
               Cow position:chr24:7046852-7046678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):103, 49

               
               
               Conread position:180-350
               
               
               Cow position:chr24:6151691-6151864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 51

               
               
               Conread position:186-333
               
               
               Cow position:chr24:6957406-6957555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:186-340
               
               
               Cow position:chr24:880532-880688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:186-342
               
               
               Cow position:chr24:28600536-28600367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr24:34496021-34496197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr24:37395306-37395135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:186-350
               
               
               Cow position:chr24:38006803-38006643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 21

               
               
               Conread position:186-350
               
               
               Cow position:chr24:39523544-39523373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):95, 50

               
               
               Conread position:186-351
               
               
               Cow position:chr24:16895227-16895061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:187-350
               
               
               Cow position:chr24:28042876-28043051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:188-350
               
               
               Cow position:chr24:27418196-27418028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 129

               
               
               Conread position:195-353
               
               
               Cow position:chr24:27284732-27284895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:216-366
               
               
               Cow position:chr24:11007391-11007548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:49-350
               
               
               Cow position:chr25:14720528-14720842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:51-350
               
               
               Cow position:chr25:26090036-26089715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:55-189
               
               
               Cow position:chr25:18935093-18934954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:55-220
               
               
               Cow position:chr25:26112055-26112227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:55-243
               
               
               Cow position:chr25:1096358-1096552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:55-276
               
               
               Cow position:chr25:4002577-4002816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):42, 204

               
               
               Conread position:55-276
               
               
               Cow position:chr25:5514787-5515028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-280
               
               
               Cow position:chr25:17354163-17354385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:55-286
               
               
               Cow position:chr25:9957251-9957015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):133, 37

               
               
               Conread position:55-286
               
               
               Cow position:chr25:12097623-12097863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:55-286
               
               
               Cow position:chr25:36779276-36779524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:55-288
               
               
               Cow position:chr25:35612516-35612287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 72

               
               
               Conread position:55-319
               
               
               Cow position:chr25:35347685-35347970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-338
               
               
               Cow position:chr25:2110864-2111130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):128, 41

               
               
               Conread position:55-338
               
               
               Cow position:chr25:14117890-14118177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:55-346
               
               
               Cow position:chr25:12778751-12778447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-350
               
               
               Cow position:chr25:11585299-11585616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-355
               
               
               Cow position:chr25:35344819-35345113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):44, 207

               
               
               Conread position:56-181
               
               
               Cow position:chr25:20060250-20060116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr25:6256156-6256025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-182
               
               
               Cow position:chr25:35607940-35607810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-203
               
               
               Cow position:chr25:433298-433141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-207
               
               
               Cow position:chr25:17712316-17712470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 133

               
               
               Conread position:56-223
               
               
               Cow position:chr25:18075450-18075636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr25:10365970-10365787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-245
               
               
               Cow position:chr25:36026789-36026991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-249
               
               
               Cow position:chr25:24452388-24452188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:56-266
               
               
               Cow position:chr25:7329326-7329553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-266
               
               
               Cow position:chr25:14225014-14224799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-267
               
               
               Cow position:chr25:10137880-10138099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-269
               
               
               Cow position:chr25:8918496-8918269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:56-273
               
               
               Cow position:chr25:16001738-16001514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-275
               
               
               Cow position:chr25:35332947-35333172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:56-276
               
               
               Cow position:chr25:35625392-35625170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:56-279
               
               
               Cow position:chr25:11054702-11054921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:56-280
               
               
               Cow position:chr25:1735534-1735302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-280
               
               
               Cow position:chr25:5792025-5791782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-280
               
               
               Cow position:chr25:6464247-6464011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:56-280
               
               
               Cow position:chr25:14266722-14266500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-280
               
               
               Cow position:chr25:36033218-36033456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:56-281
               
               
               Cow position:chr25:10407636-10407398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-283
               
               
               Cow position:chr25:31732954-31732711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:56-286
               
               
               Cow position:chr25:6003209-6002984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-286
               
               
               Cow position:chr25:6891737-6891512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-286
               
               
               Cow position:chr25:9396232-9396468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):43, 124

               
               
               Conread position:56-286
               
               
               Cow position:chr25:17658396-17658634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-286
               
               
               Cow position:chr25:20496322-20496555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:56-287
               
               
               Cow position:chr25:11666438-11666673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-287
               
               
               Cow position:chr25:12293969-12293722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-287
               
               
               Cow position:chr25:15319702-15319945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-288
               
               
               Cow position:chr25:18130856-18131090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:56-288
               
               
               Cow position:chr25:25827244-25827497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-297
               
               
               Cow position:chr25:12204252-12204511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 247

               
               
               Conread position:56-313
               
               
               Cow position:chr25:2194727-2194991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-314
               
               
               Cow position:chr25:25754215-25753935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-320
               
               
               Cow position:chr25:18988158-18988458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-325
               
               
               Cow position:chr25:20348640-20348942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-327
               
               
               Cow position:chr25:20069502-20069789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-327
               
               
               Cow position:chr25:37594196-37594481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:56-335
               
               
               Cow position:chr25:12817154-12817448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 119

               
               
               Conread position:56-338
               
               
               Cow position:chr25:11830114-11829837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:56-338
               
               
               Cow position:chr25:22297235-22296940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:56-340
               
               
               Cow position:chr25:26654688-26654995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:56-342
               
               
               Cow position:chr25:12234976-12234687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:56-342
               
               
               Cow position:chr25:19129635-19129944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-342
               
               
               Cow position:chr25:33978419-33978130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:56-343
               
               
               Cow position:chr25:15377115-15377417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-343
               
               
               Cow position:chr25:20023611-20023295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-343
               
               
               Cow position:chr25:38425147-38425448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:56-344
               
               
               Cow position:chr25:8576475-8576785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:56-344
               
               
               Cow position:chr25:18293538-18293837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-344
               
               
               Cow position:chr25:21895104-21894793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:56-345
               
               
               Cow position:chr25:21209166-21208877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-346
               
               
               Cow position:chr25:788051-788353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:56-346
               
               
               Cow position:chr25:3992572-3992873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-346
               
               
               Cow position:chr25:6226823-6227129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 140

               
               
               Conread position:56-346
               
               
               Cow position:chr25:6961368-6961059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:56-346
               
               
               Cow position:chr25:7641672-7641356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:56-346
               
               
               Cow position:chr25:11131363-11131678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-346
               
               
               Cow position:chr25:16319350-16319046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-347
               
               
               Cow position:chr25:61439-61745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-347
               
               
               Cow position:chr25:5756479-5756779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-347
               
               
               Cow position:chr25:18265945-18266259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:56-347
               
               
               Cow position:chr25:34169736-34170041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:56-348
               
               
               Cow position:chr25:6474317-6473992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr25:1762889-1763184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:56-350
               
               
               Cow position:chr25:1838021-1838338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 173

               
               
               Conread position:56-350
               
               
               Cow position:chr25:2136133-2136448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr25:2414612-2414895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):134, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr25:5847025-5846712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:56-350
               
               
               Cow position:chr25:7581646-7581329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr25:10156373-10156667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr25:10218269-10217952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 177

               
               
               Conread position:56-350
               
               
               Cow position:chr25:10504553-10504243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr25:10643528-10643211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-350
               
               
               Cow position:chr25:11956607-11956901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:56-350
               
               
               Cow position:chr25:15254549-15254250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr25:16064678-16064989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr25:16922012-16921700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr25:18564277-18564584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr25:20460905-20461200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr25:21245825-21245506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr25:21266788-21267084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr25:21950908-21951227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:56-350
               
               
               Cow position:chr25:22203908-22203602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 221

               
               
               Conread position:56-350
               
               
               Cow position:chr25:22531069-22531379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:56-350
               
               
               Cow position:chr25:23917622-23917939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):41, 170

               
               
               Conread position:56-350
               
               
               Cow position:chr25:24669649-24669351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr25:26087297-26087618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 318

               
               
               Conread position:56-350
               
               
               Cow position:chr25:26238653-26238960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr25:28188167-28187847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 214

               
               
               Conread position:56-350
               
               
               Cow position:chr25:33550287-33550609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:56-351
               
               
               Cow position:chr25:26700820-26701125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:56-351
               
               
               Cow position:chr25:30319667-30319355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-353
               
               
               Cow position:chr25:18294531-18294214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-353
               
               
               Cow position:chr25:36081655-36081976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-355
               
               
               Cow position:chr25:14791534-14791857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:56-366
               
               
               Cow position:chr25:33256150-33256467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:56-366
               
               
               Cow position:chr25:36761888-36762221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-367
               
               
               Cow position:chr25:14196638-14196978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-369
               
               
               Cow position:chr25:20211304-20210975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:56-379
               
               
               Cow position:chr25:40321511-40321163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 129

               
               
               Conread position:57-239
               
               
               Cow position:chr25:6424805-6424610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 188

               
               
               Conread position:57-279
               
               
               Cow position:chr25:10330619-10330395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-286
               
               
               Cow position:chr25:9754301-9754073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 40

               
               
               Conread position:57-319
               
               
               Cow position:chr25:20020204-20019936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:57-337
               
               
               Cow position:chr25:38135531-38135835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:57-344
               
               
               Cow position:chr25:9269154-9269435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:57-344
               
               
               Cow position:chr25:16400467-16400193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):118, 36

               
               
               Conread position:57-346
               
               
               Cow position:chr25:11437019-11436713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:57-349
               
               
               Cow position:chr25:23410446-23410754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:57-350
               
               
               Cow position:chr25:13569384-13569079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:57-350
               
               
               Cow position:chr25:18721322-18721022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:57-350
               
               
               Cow position:chr25:20007930-20008231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:58-276
               
               
               Cow position:chr25:9961394-9961159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):28, 191

               
               
               Conread position:58-347
               
               
               Cow position:chr25:12117205-12116904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:58-350
               
               
               Cow position:chr25:6683277-6682964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 83

               
               
               Conread position:58-350
               
               
               Cow position:chr25:7216612-7216922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-350
               
               
               Cow position:chr25:19478472-19478773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-350
               
               
               Cow position:chr25:23829333-23829031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:58-350
               
               
               Cow position:chr25:36036996-36036681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-351
               
               
               Cow position:chr25:12840934-12840618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:58-351
               
               
               Cow position:chr25:19679126-19679454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:59-182
               
               
               Cow position:chr25:16389507-16389379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:59-350
               
               
               Cow position:chr25:12319553-12319255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 40

               
               
               Conread position:59-350
               
               
               Cow position:chr25:38981895-38982191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:60-286
               
               
               Cow position:chr25:36535649-36535410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:60-344
               
               
               Cow position:chr25:34768934-34768640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:61-288
               
               
               Cow position:chr25:9023431-9023659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:63-345
               
               
               Cow position:chr25:20076286-20076590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:64-364
               
               
               Cow position:chr25:31230436-31230134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:65-276
               
               
               Cow position:chr25:12824223-12824003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:65-276
               
               
               Cow position:chr25:13736520-13736299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 178

               
               
               Conread position:65-292
               
               
               Cow position:chr25:21042176-21042416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:65-350
               
               
               Cow position:chr25:13325390-13325677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:66-286
               
               
               Cow position:chr25:26270142-26269914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 225

               
               
               Conread position:67-286
               
               
               Cow position:chr25:40905036-40904807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 177

               
               
               Conread position:68-350
               
               
               Cow position:chr25:13294700-13294974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:70-334
               
               
               Cow position:chr25:8157714-8157426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:70-341
               
               
               Cow position:chr25:16714478-16714180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 201

               
               
               Conread position:70-350
               
               
               Cow position:chr25:9055991-9056276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:70-350
               
               
               Cow position:chr25:18905681-18905982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:70-352
               
               
               Cow position:chr25:17704545-17704844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 146

               
               
               Conread position:71-350
               
               
               Cow position:chr25:13272366-13272667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:73-350
               
               
               Cow position:chr25:27801089-27801376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:77-364
               
               
               Cow position:chr25:22241794-22242077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:80-269
               
               
               Cow position:chr25:3982850-3983047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:81-286
               
               
               Cow position:chr25:12755684-12755464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 217

               
               
               Conread position:81-286
               
               
               Cow position:chr25:13672195-13672418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):18, 192

               
               
               Conread position:85-351
               
               
               Cow position:chr25:11315722-11316001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:87-334
               
               
               Cow position:chr25:4681046-4681312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:88-353
               
               
               Cow position:chr25:36017353-36017634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:96-287
               
               
               Cow position:chr25:17991761-17991562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:96-338
               
               
               Cow position:chr25:15440957-15440691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 174

               
               
               Conread position:98-285
               
               
               Cow position:chr25:31704818-31705025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 205

               
               
               Conread position:98-318
               
               
               Cow position:chr25:12081492-12081256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:98-335
               
               
               Cow position:chr25:33245759-33246002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 63

               
               
               Conread position:100-276
               
               
               Cow position:chr25:23323033-23323214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 138

               
               
               Conread position:100-346
               
               
               Cow position:chr25:23779492-23779236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:100-350
               
               
               Cow position:chr25:18894892-18894630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:100-350
               
               
               Cow position:chr25:32277772-32277509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:100-351
               
               
               Cow position:chr25:17144254-17144534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:104-333
               
               
               Cow position:chr25:19317093-19317346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:104-344
               
               
               Cow position:chr25:30462468-30462216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 121

               
               
               Conread position:107-267
               
               
               Cow position:chr25:22549798-22549642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:109-343
               
               
               Cow position:chr25:9349434-9349193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):26, 124

               
               
               Conread position:112-276
               
               
               Cow position:chr25:32588036-32587864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 10

               
               
               Conread position:113-273
               
               
               Cow position:chr25:36138800-36138638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:122-350
               
               
               Cow position:chr25:12609197-12609438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:123-350
               
               
               Cow position:chr25:6687803-6688042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:123-350
               
               
               Cow position:chr25:8961627-8961868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:123-350
               
               
               Cow position:chr25:30618919-30619161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:125-350
               
               
               Cow position:chr25:5474371-5474133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:127-288
               
               
               Cow position:chr25:12997449-12997620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 168

               
               
               Conread position:128-350
               
               
               Cow position:chr25:22730691-22730926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:133-350
               
               
               Cow position:chr25:24203129-24202914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:137-354
               
               
               Cow position:chr25:18202059-18201828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:141-336
               
               
               Cow position:chr25:3373501-3373298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:179-351
               
               
               Cow position:chr25:36021241-36021422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):53, 71

               
               
               Conread position:180-363
               
               
               Cow position:chr25:1824180-1823986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:185-350
               
               
               Cow position:chr25:19364136-19363961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 49

               
               
               Conread position:186-350
               
               
               Cow position:chr25:14157546-14157723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr25:23504972-23505150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:186-351
               
               
               Cow position:chr25:5920009-5920180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:186-366
               
               
               Cow position:chr25:12806969-12807151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 30

               
               
               Conread position:187-351
               
               
               Cow position:chr25:25716577-25716745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:193-350
               
               
               Cow position:chr25:17403416-17403577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:238-350
               
               
               Cow position:chr25:26072581-26072463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-216
               
               
               Cow position:chr26:30128219-30128048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:55-263
               
               
               Cow position:chr26:16796432-16796209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:55-268
               
               
               Cow position:chr26:23926178-23925960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 56

               
               
               Conread position:55-273
               
               
               Cow position:chr26:28442208-28441975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 221

               
               
               Conread position:55-286
               
               
               Cow position:chr26:20013279-20013520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):44, 59

               
               
               Conread position:55-345
               
               
               Cow position:chr26:11134896-11134579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:55-347
               
               
               Cow position:chr26:4585410-4585099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 187

               
               
               Conread position:55-350
               
               
               Cow position:chr26:2994873-2994582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:55-350
               
               
               Cow position:chr26:5246688-5246361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-350
               
               
               Cow position:chr26:11370734-11371025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):44, 115

               
               
               Conread position:55-351
               
               
               Cow position:chr26:21637237-21636919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-356
               
               
               Cow position:chr26:20129875-20129556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 114

               
               
               Conread position:56-176
               
               
               Cow position:chr26:13774295-13774409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:56-181
               
               
               Cow position:chr26:28446356-28446478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):97, 43

               
               
               Conread position:56-182
               
               
               Cow position:chr26:5988920-5988796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-182
               
               
               Cow position:chr26:6793742-6793873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-220
               
               
               Cow position:chr26:7224815-7224653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):105, 37

               
               
               Conread position:56-223
               
               
               Cow position:chr26:14395434-14395261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:56-225
               
               
               Cow position:chr26:32026569-32026383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):57, 35

               
               
               Conread position:56-240
               
               
               Cow position:chr26:1587401-1587592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):119, 40

               
               
               Conread position:56-253
               
               
               Cow position:chr26:20182561-20182777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 149

               
               
               Conread position:56-257
               
               
               Cow position:chr26:21351488-21351704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 102

               
               
               Conread position:56-265
               
               
               Cow position:chr26:7525667-7525451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-269
               
               
               Cow position:chr26:24280630-24280850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-274
               
               
               Cow position:chr26:9853802-9853576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:56-276
               
               
               Cow position:chr26:28243818-28243590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-280
               
               
               Cow position:chr26:9867314-9867091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-286
               
               
               Cow position:chr26:6006245-6006012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:56-286
               
               
               Cow position:chr26:8186451-8186702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 166

               
               
               Conread position:56-286
               
               
               Cow position:chr26:18692234-18692463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:56-286
               
               
               Cow position:chr26:31779275-31779524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 195

               
               
               Conread position:56-287
               
               
               Cow position:chr26:21991913-21992146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-287
               
               
               Cow position:chr26:25442089-25441853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):22, 127

               
               
               Conread position:56-288
               
               
               Cow position:chr26:16167112-16166870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-291
               
               
               Cow position:chr26:10768100-10767864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:56-291
               
               
               Cow position:chr26:20846424-20846670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:56-293
               
               
               Cow position:chr26:18918270-18918028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-295
               
               
               Cow position:chr26:17401563-17401815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 43

               
               
               Conread position:56-305
               
               
               Cow position:chr26:14080520-14080771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-314
               
               
               Cow position:chr26:23001244-23000960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr26:31856506-31856789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-314
               
               
               Cow position:chr26:32898070-32897789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-332
               
               
               Cow position:chr26:35704187-35704487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-337
               
               
               Cow position:chr26:32670691-32670392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:56-344
               
               
               Cow position:chr26:19459473-19459804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:56-345
               
               
               Cow position:chr26:25393831-25394151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:56-346
               
               
               Cow position:chr26:6475627-6475316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-347
               
               
               Cow position:chr26:32652925-32652620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr26:613871-613556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-350
               
               
               Cow position:chr26:3072162-3071861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr26:3706601-3706907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:56-350
               
               
               Cow position:chr26:4363105-4363415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr26:4854338-4854661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr26:7148498-7148189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:56-350
               
               
               Cow position:chr26:8352759-8353086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 115

               
               
               Conread position:56-350
               
               
               Cow position:chr26:9491729-9492039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:56-350
               
               
               Cow position:chr26:11263438-11263755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-350
               
               
               Cow position:chr26:13021348-13021028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr26:16549781-16550104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr26:16921745-16922053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr26:25526047-25526365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:56-350
               
               
               Cow position:chr26:26294387-26294079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr26:27491704-27491384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr26:32553482-32553807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:56-350
               
               
               Cow position:chr26:32776704-32776396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr26:33011862-33011554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-351
               
               
               Cow position:chr26:8810933-8811244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:56-351
               
               
               Cow position:chr26:15200716-15200399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 313

               
               
               Conread position:56-351
               
               
               Cow position:chr26:21242904-21243213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:56-364
               
               
               Cow position:chr26:17057483-17057812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:56-364
               
               
               Cow position:chr26:19774503-19774167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:56-366
               
               
               Cow position:chr26:33567242-33566909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:56-368
               
               
               Cow position:chr26:33857396-33857060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:57-182
               
               
               Cow position:chr26:30752062-30751932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr26:9840260-9840118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:57-276
               
               
               Cow position:chr26:14958217-14957986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:57-279
               
               
               Cow position:chr26:3182147-3181903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-286
               
               
               Cow position:chr26:27026-26793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:57-344
               
               
               Cow position:chr26:8700248-8699936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 191

               
               
               Conread position:57-345
               
               
               Cow position:chr26:15211617-15211915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:57-346
               
               
               Cow position:chr26:23097376-23097081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 223

               
               
               Conread position:57-350
               
               
               Cow position:chr26:12145306-12145001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:57-364
               
               
               Cow position:chr26:20291880-20291559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:58-276
               
               
               Cow position:chr26:6447804-6447564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:58-304
               
               
               Cow position:chr26:8746029-8745756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:58-350
               
               
               Cow position:chr26:6714480-6714185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:58-350
               
               
               Cow position:chr26:33202256-33201953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:59-274
               
               
               Cow position:chr26:20448775-20448993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:59-279
               
               
               Cow position:chr26:12807713-12807491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:59-288
               
               
               Cow position:chr26:2531371-2531137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:59-346
               
               
               Cow position:chr26:26466916-26466619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 94

               
               
               Conread position:59-347
               
               
               Cow position:chr26:27594443-27594729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:59-367
               
               
               Cow position:chr26:34108568-34108893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:60-280
               
               
               Cow position:chr26:32013436-32013670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:60-286
               
               
               Cow position:chr26:5361151-5360937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:60-350
               
               
               Cow position:chr26:31605212-31605523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:61-287
               
               
               Cow position:chr26:20256655-20256875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:63-350
               
               
               Cow position:chr26:4167548-4167238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:63-351
               
               
               Cow position:chr26:798490-798178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 213

               
               
               Conread position:65-182
               
               
               Cow position:chr26:26670937-26670816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:67-285
               
               
               Cow position:chr26:6252659-6252895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 200

               
               
               Conread position:70-364
               
               
               Cow position:chr26:14175096-14175414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:72-288
               
               
               Cow position:chr26:32672623-32672392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 173

               
               
               Conread position:74-277
               
               
               Cow position:chr26:27761830-27761622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:76-346
               
               
               Cow position:chr26:10965754-10965481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:76-350
               
               
               Cow position:chr26:35448884-35449179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:77-330
               
               
               Cow position:chr26:22249660-22249380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:77-350
               
               
               Cow position:chr26:829630-829921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):20, 89

               
               
               Conread position:77-350
               
               
               Cow position:chr26:34060155-34060449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:77-364
               
               
               Cow position:chr26:23315588-23315905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:78-350
               
               
               Cow position:chr26:22354236-22354531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):21, 158

               
               
               Conread position:78-350
               
               
               Cow position:chr26:30568833-30568547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:100-286
               
               
               Cow position:chr26:587026-586837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):86, 50

               
               
               Conread position:100-288
               
               
               Cow position:chr26:11270094-11270280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:103-350
               
               
               Cow position:chr26:8642795-8643058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:103-350
               
               
               Cow position:chr26:34256153-34256419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):80, 228

               
               
               Conread position:108-288
               
               
               Cow position:chr26:3192600-3192427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 43

               
               
               Conread position:108-350
               
               
               Cow position:chr26:22349158-22348896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 135

               
               
               Conread position:109-350
               
               
               Cow position:chr26:20769710-20769968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:112-351
               
               
               Cow position:chr26:9535376-9535635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:113-346
               
               
               Cow position:chr26:31633585-31633841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):13, 130

               
               
               Conread position:113-350
               
               
               Cow position:chr26:33253461-33253200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 258

               
               
               Conread position:114-285
               
               
               Cow position:chr26:8820000-8819816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:115-347
               
               
               Cow position:chr26:22152089-22152341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:117-350
               
               
               Cow position:chr26:14905944-14905691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:122-350
               
               
               Cow position:chr26:7315231-7314991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 38

               
               
               Conread position:123-350
               
               
               Cow position:chr26:26950573-26950339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:124-350
               
               
               Cow position:chr26:12238150-12237912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:126-351
               
               
               Cow position:chr26:20551018-20551263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:130-350
               
               
               Cow position:chr26:12893542-12893311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:144-350
               
               
               Cow position:chr26:29889596-29889397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):138, 18

               
               
               Conread position:151-350
               
               
               Cow position:chr26:4807461-4807670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:151-350
               
               
               Cow position:chr26:13818323-13818540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:186-335
               
               
               Cow position:chr26:22603095-22602936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 67

               
               
               Conread position:186-350
               
               
               Cow position:chr26:6864960-6865141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr26:33392336-33392511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:188-353
               
               
               Cow position:chr26:27177130-27176965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:190-350
               
               
               Cow position:chr26:34106347-34106510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:194-350
               
               
               Cow position:chr26:24453954-24453793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:195-350
               
               
               Cow position:chr26:5168345-5168510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:33-288
               
               
               Cow position:chr27:27438312-27438575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:48-347
               
               
               Cow position:chr27:19647763-19648083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:49-364
               
               
               Cow position:chr27:27856512-27856173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:51-286
               
               
               Cow position:chr27:16787004-16786760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 185

               
               
               Conread position:51-286
               
               
               Cow position:chr27:25380167-25379920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:53-182
               
               
               Cow position:chr27:22498727-22498600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:55-182
               
               
               Cow position:chr27:21418893-21419026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:55-191
               
               
               Cow position:chr27:16620165-16620020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:55-193
               
               
               Cow position:chr27:18030883-18031031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:55-278
               
               
               Cow position:chr27:27554513-27554742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:55-284
               
               
               Cow position:chr27:24227620-24227861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:55-286
               
               
               Cow position:chr27:15925508-15925277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:55-288
               
               
               Cow position:chr27:8570862-8571111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 244

               
               
               Conread position:55-314
               
               
               Cow position:chr27:22426655-22426939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 200

               
               
               Conread position:55-343
               
               
               Cow position:chr27:4812703-4813020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:55-350
               
               
               Cow position:chr27:10980037-10979720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:55-350
               
               
               Cow position:chr27:27632436-27632742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-351
               
               
               Cow position:chr27:28190044-28190345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:55-355
               
               
               Cow position:chr27:22220727-22220405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 142

               
               
               Conread position:55-370
               
               
               Cow position:chr27:28518459-28518133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:55-407
               
               
               Cow position:chr27:26427955-26428333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 177

               
               
               Conread position:56-172
               
               
               Cow position:chr27:68268-68393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr27:29399991-29399858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr27:22771930-22771786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr27:20592156-20592013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-212
               
               
               Cow position:chr27:26625297-26625134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-213
               
               
               Cow position:chr27:18922623-18922461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-234
               
               
               Cow position:chr27:11815587-11815778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-249
               
               
               Cow position:chr27:17926464-17926655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-252
               
               
               Cow position:chr27:18215228-18215017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 189

               
               
               Conread position:56-266
               
               
               Cow position:chr27:4829635-4829854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 41

               
               
               Conread position:56-269
               
               
               Cow position:chr27:26398086-26398311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-272
               
               
               Cow position:chr27:30670910-30670684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:56-273
               
               
               Cow position:chr27:1183704-1183941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-276
               
               
               Cow position:chr27:27141766-27141542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-276
               
               
               Cow position:chr27:28038165-28038399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-277
               
               
               Cow position:chr27:8291839-8292062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-278
               
               
               Cow position:chr27:24999562-24999802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:56-280
               
               
               Cow position:chr27:11412893-11412664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:56-280
               
               
               Cow position:chr27:14902476-14902717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:56-280
               
               
               Cow position:chr27:18544170-18543928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr27:27550575-27550798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:56-280
               
               
               Cow position:chr27:28018509-28018274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-280
               
               
               Cow position:chr27:29283236-29283472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-282
               
               
               Cow position:chr27:16871743-16871981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:56-286
               
               
               Cow position:chr27:15319624-15319387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 183

               
               
               Conread position:56-286
               
               
               Cow position:chr27:21569671-21569909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-286
               
               
               Cow position:chr27:26218871-26218633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:56-286
               
               
               Cow position:chr27:28921724-28921961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-288
               
               
               Cow position:chr27:13875907-13875656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-288
               
               
               Cow position:chr27:22440312-22440070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:56-288
               
               
               Cow position:chr27:23070187-23070431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-288
               
               
               Cow position:chr27:28001646-28001884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:56-302
               
               
               Cow position:chr27:11255685-11255439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:56-310
               
               
               Cow position:chr27:30362415-30362151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-313
               
               
               Cow position:chr27:8962097-8962363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:56-318
               
               
               Cow position:chr27:9090629-9090902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:56-318
               
               
               Cow position:chr27:12429581-12429295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:56-319
               
               
               Cow position:chr27:31147501-31147772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 174

               
               
               Conread position:56-327
               
               
               Cow position:chr27:707120-706832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:56-335
               
               
               Cow position:chr27:6074089-6073803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-336
               
               
               Cow position:chr27:26508985-26509283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:56-337
               
               
               Cow position:chr27:12278100-12278379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-340
               
               
               Cow position:chr27:29515688-29515979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:56-342
               
               
               Cow position:chr27:7958663-7958966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:56-342
               
               
               Cow position:chr27:27640819-27641147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 291

               
               
               Conread position:56-342
               
               
               Cow position:chr27:30551168-30550854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:56-343
               
               
               Cow position:chr27:7934991-7935294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-343
               
               
               Cow position:chr27:30765204-30764899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:56-344
               
               
               Cow position:chr27:4805736-4806039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:56-344
               
               
               Cow position:chr27:10992526-10992219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-344
               
               
               Cow position:chr27:24331898-24331583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-344
               
               
               Cow position:chr27:30988970-30988660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-345
               
               
               Cow position:chr27:1058507-1058814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):47, 289

               
               
               Conread position:56-345
               
               
               Cow position:chr27:18593443-18593134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-345
               
               
               Cow position:chr27:23472428-23472119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-346
               
               
               Cow position:chr27:20036956-20037254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-346
               
               
               Cow position:chr27:20283804-20283497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:56-346
               
               
               Cow position:chr27:20629204-20628929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):204, 34

               
               
               Conread position:56-346
               
               
               Cow position:chr27:22547232-22547535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-346
               
               
               Cow position:chr27:25277309-25277003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-347
               
               
               Cow position:chr27:12596931-12596636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-347
               
               
               Cow position:chr27:26440884-26441188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-347
               
               
               Cow position:chr27:29038768-29039082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:56-348
               
               
               Cow position:chr27:24321362-24321048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-348
               
               
               Cow position:chr27:29831514-29831839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:56-350
               
               
               Cow position:chr27:299211-299524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr27:2592714-2592399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr27:4385894-4386204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:56-350
               
               
               Cow position:chr27:6550623-6550321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-350
               
               
               Cow position:chr27:10307123-10307440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-350
               
               
               Cow position:chr27:11435156-11435463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):127, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr27:12246831-12246510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr27:15454384-15454067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr27:16284645-16284332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr27:16705419-16705107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):48, 174

               
               
               Conread position:56-350
               
               
               Cow position:chr27:18507804-18507507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr27:19546330-19546655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 226

               
               
               Conread position:56-350
               
               
               Cow position:chr27:19661114-19660789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr27:19718096-19717771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr27:20354752-20354459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):125, 93

               
               
               Conread position:56-350
               
               
               Cow position:chr27:20553889-20553588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr27:21393332-21393651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-350
               
               
               Cow position:chr27:22035201-22035521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr27:22171471-22171156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):67, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr27:22454608-22454919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr27:23483395-23483083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr27:23554147-23554469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-350
               
               
               Cow position:chr27:23882202-23882511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr27:23930137-23929825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr27:24014568-24014883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr27:24445984-24446290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr27:25783775-25783482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr27:26581275-26581580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:56-350
               
               
               Cow position:chr27:26643845-26643546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:56-350
               
               
               Cow position:chr27:26919740-26920054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 60

               
               
               Conread position:56-350
               
               
               Cow position:chr27:27019928-27020240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):45, 224

               
               
               Conread position:56-350
               
               
               Cow position:chr27:28206970-28206658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr27:28931615-28931944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 324

               
               
               Conread position:56-350
               
               
               Cow position:chr27:30582910-30582593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):43, 305

               
               
               Conread position:56-350
               
               
               Cow position:chr27:31372807-31373112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-351
               
               
               Cow position:chr27:9169472-9169784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 288

               
               
               Conread position:56-351
               
               
               Cow position:chr27:22418592-22418911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:56-351
               
               
               Cow position:chr27:24738629-24738945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 99

               
               
               Conread position:56-351
               
               
               Cow position:chr27:26999252-26999567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-353
               
               
               Cow position:chr27:12516371-12516048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:56-353
               
               
               Cow position:chr27:15867563-15867244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:56-354
               
               
               Cow position:chr27:6500237-6499914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-355
               
               
               Cow position:chr27:17646026-17646317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):167, 40

               
               
               Conread position:56-355
               
               
               Cow position:chr27:22179625-22179915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:56-364
               
               
               Cow position:chr27:22603335-22603026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:56-367
               
               
               Cow position:chr27:27003109-27003421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:57-281
               
               
               Cow position:chr27:27259780-27259549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 169

               
               
               Conread position:57-286
               
               
               Cow position:chr27:6523217-6522975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 185

               
               
               Conread position:57-342
               
               
               Cow position:chr27:25809351-25809651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:57-347
               
               
               Cow position:chr27:8942512-8942830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:57-350
               
               
               Cow position:chr27:15408872-15409180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-350
               
               
               Cow position:chr27:16478176-16478480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:57-356
               
               
               Cow position:chr27:28496203-28496520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-366
               
               
               Cow position:chr27:1768464-1768782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:58-278
               
               
               Cow position:chr27:6058673-6058441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 184

               
               
               Conread position:58-343
               
               
               Cow position:chr27:30868568-30868877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):41, 188

               
               
               Conread position:58-347
               
               
               Cow position:chr27:22330499-22330807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 104

               
               
               Conread position:58-350
               
               
               Cow position:chr27:13252180-13251872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:58-350
               
               
               Cow position:chr27:19685544-19685857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:58-350
               
               
               Cow position:chr27:22723536-22723836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 228

               
               
               Conread position:58-352
               
               
               Cow position:chr27:1498484-1498169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:58-353
               
               
               Cow position:chr27:17397276-17397601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-364
               
               
               Cow position:chr27:27038673-27038997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:59-236
               
               
               Cow position:chr27:18434301-18434489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 181

               
               
               Conread position:59-359
               
               
               Cow position:chr27:23632771-23632447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:60-274
               
               
               Cow position:chr27:25790972-25790746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 182

               
               
               Conread position:60-276
               
               
               Cow position:chr27:22268673-22268441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:61-265
               
               
               Cow position:chr27:30843911-30844127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:61-350
               
               
               Cow position:chr27:15643343-15643031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):38, 193

               
               
               Conread position:61-364
               
               
               Cow position:chr27:536625-536305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 57

               
               
               Conread position:63-359
               
               
               Cow position:chr27:19589641-19589320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 179

               
               
               Conread position:64-346
               
               
               Cow position:chr27:1290700-1290991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:64-350
               
               
               Cow position:chr27:8629707-8630014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:64-350
               
               
               Cow position:chr27:24477581-24477273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:65-346
               
               
               Cow position:chr27:4944365-4944654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:66-350
               
               
               Cow position:chr27:30871897-30872199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):33, 177

               
               
               Conread position:70-350
               
               
               Cow position:chr27:20046036-20045751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:70-350
               
               
               Cow position:chr27:27270379-27270685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):12, 202

               
               
               Conread position:70-359
               
               
               Cow position:chr27:16781023-16780715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 274

               
               
               Conread position:71-346
               
               
               Cow position:chr27:14343310-14343589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:71-352
               
               
               Cow position:chr27:22423652-22423370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:73-350
               
               
               Cow position:chr27:23891093-23890794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:73-350
               
               
               Cow position:chr27:30359554-30359263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):121, 50

               
               
               Conread position:74-332
               
               
               Cow position:chr27:22513520-22513803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:75-350
               
               
               Cow position:chr27:7731095-7731401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:81-335
               
               
               Cow position:chr27:4858502-4858768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:85-288
               
               
               Cow position:chr27:29816478-29816692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 113

               
               
               Conread position:87-334
               
               
               Cow position:chr27:17331644-17331371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:96-350
               
               
               Cow position:chr27:3306901-3306631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:98-276
               
               
               Cow position:chr27:16238032-16237849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:98-350
               
               
               Cow position:chr27:16103933-16103668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):84, 53

               
               
               Conread position:100-273
               
               
               Cow position:chr27:4011806-4011622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):26, 140

               
               
               Conread position:100-277
               
               
               Cow position:chr27:10395134-10395320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:100-286
               
               
               Cow position:chr27:7537949-7538146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 141

               
               
               Conread position:100-344
               
               
               Cow position:chr27:8405711-8405960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:100-350
               
               
               Cow position:chr27:715630-715358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 123

               
               
               Conread position:100-350
               
               
               Cow position:chr27:8168302-8168573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 151

               
               
               Conread position:100-350
               
               
               Cow position:chr27:16965715-16965434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 138

               
               
               Conread position:103-350
               
               
               Cow position:chr27:24371355-24371099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:105-282
               
               
               Cow position:chr27:16275552-16275728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:109-350
               
               
               Cow position:chr27:427087-426826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):17, 52

               
               
               Conread position:112-350
               
               
               Cow position:chr27:30260780-30261035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:115-289
               
               
               Cow position:chr27:20635275-20635104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):156, 13

               
               
               Conread position:119-350
               
               
               Cow position:chr27:23452552-23452318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):163, 29

               
               
               Conread position:123-341
               
               
               Cow position:chr27:16625998-16625765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:123-350
               
               
               Cow position:chr27:12191388-12191622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):75, 83

               
               
               Conread position:124-343
               
               
               Cow position:chr27:8263235-8263474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:126-350
               
               
               Cow position:chr27:26188919-26188686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):57, 5

               
               
               Conread position:128-350
               
               
               Cow position:chr27:22559725-22559967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:129-350
               
               
               Cow position:chr27:20092743-20092978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:146-352
               
               
               Cow position:chr27:590687-590908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:151-343
               
               
               Cow position:chr27:15215307-15215094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:154-344
               
               
               Cow position:chr27:29593563-29593766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:163-350
               
               
               Cow position:chr27:20812967-20812761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:186-345
               
               
               Cow position:chr27:22225566-22225731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 48

               
               
               Conread position:188-350
               
               
               Cow position:chr27:17918288-17918457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:33-364
               
               
               Cow position:chr28:2132156-2131803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:49-335
               
               
               Cow position:chr28:4098628-4098920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:55-213
               
               
               Cow position:chr28:16450907-16450755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:55-225
               
               
               Cow position:chr28:2279876-2279694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:55-226
               
               
               Cow position:chr28:26340125-26340313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 181

               
               
               Conread position:55-269
               
               
               Cow position:chr28:9390576-9390349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:55-271
               
               
               Cow position:chr28:7590393-7590165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 187

               
               
               Conread position:55-280
               
               
               Cow position:chr28:5904524-5904757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:55-280
               
               
               Cow position:chr28:15007953-15008185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:55-288
               
               
               Cow position:chr28:751013-751260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 181

               
               
               Conread position:55-319
               
               
               Cow position:chr28:5826737-5827024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):97, 68

               
               
               Conread position:55-337
               
               
               Cow position:chr28:18354530-18354241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:55-349
               
               
               Cow position:chr28:25762818-25763126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:55-350
               
               
               Cow position:chr28:5203988-5204300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:55-350
               
               
               Cow position:chr28:8787335-8787643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:55-350
               
               
               Cow position:chr28:25399678-25399973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):125, 38

               
               
               Conread position:55-350
               
               
               Cow position:chr28:34230018-34230332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 185

               
               
               Conread position:55-353
               
               
               Cow position:chr28:14933750-14934065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 197

               
               
               Conread position:56-170
               
               
               Cow position:chr28:8372260-8372381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-176
               
               
               Cow position:chr28:10295979-10296112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr28:3480059-3480191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr28:13371379-13371254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:56-182
               
               
               Cow position:chr28:16879478-16879354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-184
               
               
               Cow position:chr28:13242034-13241907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:56-191
               
               
               Cow position:chr28:5188612-5188474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr28:18717333-18717191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:56-212
               
               
               Cow position:chr28:2905370-2905534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-214
               
               
               Cow position:chr28:23775835-23776007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-215
               
               
               Cow position:chr28:33036676-33036510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-219
               
               
               Cow position:chr28:3077782-3077955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-220
               
               
               Cow position:chr28:7980629-7980454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-223
               
               
               Cow position:chr28:8348863-8348682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:56-236
               
               
               Cow position:chr28:16243969-16243775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:56-251
               
               
               Cow position:chr28:11827283-11827489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:56-260
               
               
               Cow position:chr28:17029926-17029712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:56-266
               
               
               Cow position:chr28:26784677-26784452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-269
               
               
               Cow position:chr28:22170928-22170695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-271
               
               
               Cow position:chr28:6577445-6577656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 40

               
               
               Conread position:56-272
               
               
               Cow position:chr28:10478553-10478326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:56-276
               
               
               Cow position:chr28:4022172-4022409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr28:5773429-5773657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:56-277
               
               
               Cow position:chr28:19222808-19222580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):43, 164

               
               
               Conread position:56-277
               
               
               Cow position:chr28:24646330-24646561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-278
               
               
               Cow position:chr28:17316648-17316888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-280
               
               
               Cow position:chr28:7512802-7512559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 239

               
               
               Conread position:56-280
               
               
               Cow position:chr28:31987393-31987639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:56-285
               
               
               Cow position:chr28:26269121-26269360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:56-286
               
               
               Cow position:chr28:10642228-10641998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-286
               
               
               Cow position:chr28:14657490-14657727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-286
               
               
               Cow position:chr28:21502184-21502422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-287
               
               
               Cow position:chr28:5771159-5771397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:56-287
               
               
               Cow position:chr28:9099724-9099968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:56-287
               
               
               Cow position:chr28:10682028-10681789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-288
               
               
               Cow position:chr28:15263935-15263681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 193

               
               
               Conread position:56-290
               
               
               Cow position:chr28:16253068-16252821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-312
               
               
               Cow position:chr28:4587886-4588163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:56-313
               
               
               Cow position:chr28:28076618-28076365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:56-325
               
               
               Cow position:chr28:11687243-11686948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-325
               
               
               Cow position:chr28:25806372-25806653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-330
               
               
               Cow position:chr28:10529693-10529405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 73

               
               
               Conread position:56-330
               
               
               Cow position:chr28:16686822-16687111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-332
               
               
               Cow position:chr28:13267571-13267876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-332
               
               
               Cow position:chr28:14151024-14151309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 192

               
               
               Conread position:56-335
               
               
               Cow position:chr28:21380664-21380972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-336
               
               
               Cow position:chr28:11451677-11451401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):47, 139

               
               
               Conread position:56-337
               
               
               Cow position:chr28:5792493-5792800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:56-337
               
               
               Cow position:chr28:23621337-23621629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:56-341
               
               
               Cow position:chr28:7228596-7228292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:56-342
               
               
               Cow position:chr28:26103505-26103799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-342
               
               
               Cow position:chr28:34878183-34877883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 242

               
               
               Conread position:56-344
               
               
               Cow position:chr28:5144733-5144422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 188

               
               
               Conread position:56-344
               
               
               Cow position:chr28:5931143-5931451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-344
               
               
               Cow position:chr28:20313065-20313376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-344
               
               
               Cow position:chr28:26684902-26685215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:56-346
               
               
               Cow position:chr28:8022321-8022002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:56-346
               
               
               Cow position:chr28:16109734-16110037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):43, 157

               
               
               Conread position:56-346
               
               
               Cow position:chr28:26220051-26220357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:56-347
               
               
               Cow position:chr28:2862651-2862970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-347
               
               
               Cow position:chr28:18934245-18934556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:56-347
               
               
               Cow position:chr28:23675933-23676240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:56-348
               
               
               Cow position:chr28:11818171-11817862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr28:661908-662213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr28:1099852-1099559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr28:1837780-1838090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr28:2819548-2819880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr28:3078888-3078578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr28:3408428-3408114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-350
               
               
               Cow position:chr28:3914499-3914822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr28:4282702-4282387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 123

               
               
               Conread position:56-350
               
               
               Cow position:chr28:4308109-4307793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr28:6971550-6971243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr28:7698193-7697878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):54, 312

               
               
               Conread position:56-350
               
               
               Cow position:chr28:7865113-7865434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-350
               
               
               Cow position:chr28:8347524-8347835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr28:8408529-8408839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr28:9285588-9285272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr28:9636667-9636352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr28:10172624-10172312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr28:11423014-11422711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:56-350
               
               
               Cow position:chr28:11527466-11527154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:56-350
               
               
               Cow position:chr28:11585418-11585097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr28:11752355-11752034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr28:11786919-11786612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr28:12951222-12951521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr28:13176889-13176584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr28:14649138-14649447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr28:16085114-16085429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:56-350
               
               
               Cow position:chr28:16919372-16919064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr28:18591060-18591375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:56-350
               
               
               Cow position:chr28:19026213-19025900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:56-350
               
               
               Cow position:chr28:19222356-19222046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr28:21355014-21355335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:56-350
               
               
               Cow position:chr28:21868241-21868562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr28:22321211-22321523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-350
               
               
               Cow position:chr28:22332339-22332633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):132, 10

               
               
               Conread position:56-350
               
               
               Cow position:chr28:22345809-22346126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:56-350
               
               
               Cow position:chr28:23007936-23007625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr28:23793513-23793205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr28:25249145-25249459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr28:25701071-25700761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:56-350
               
               
               Cow position:chr28:26743411-26743731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr28:29416927-29416612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr28:31648863-31649178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-351
               
               
               Cow position:chr28:3492995-3492677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 176

               
               
               Conread position:56-351
               
               
               Cow position:chr28:16204543-16204228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-351
               
               
               Cow position:chr28:16346737-16346426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 173

               
               
               Conread position:56-351
               
               
               Cow position:chr28:24996798-24996507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:56-351
               
               
               Cow position:chr28:25727167-25727478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:56-351
               
               
               Cow position:chr28:27218110-27218427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:56-351
               
               
               Cow position:chr28:33051810-33052143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 116

               
               
               Conread position:56-352
               
               
               Cow position:chr28:24672063-24672371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:56-353
               
               
               Cow position:chr28:3144102-3143770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-353
               
               
               Cow position:chr28:9426552-9426243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:56-355
               
               
               Cow position:chr28:19080058-19079736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 177

               
               
               Conread position:56-355
               
               
               Cow position:chr28:26922575-26922258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:56-364
               
               
               Cow position:chr28:11426756-11426422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-364
               
               
               Cow position:chr28:20124575-20124904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-364
               
               
               Cow position:chr28:21844745-21845078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-365
               
               
               Cow position:chr28:2814709-2814386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:56-366
               
               
               Cow position:chr28:4938628-4938922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-366
               
               
               Cow position:chr28:12430399-12430724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-366
               
               
               Cow position:chr28:14234762-14235072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 143

               
               
               Conread position:57-243
               
               
               Cow position:chr28:16441178-16441358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:57-275
               
               
               Cow position:chr28:5366340-5366127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:57-280
               
               
               Cow position:chr28:8682060-8681814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 104

               
               
               Conread position:57-307
               
               
               Cow position:chr28:2738021-2737745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:57-308
               
               
               Cow position:chr28:7751510-7751239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-326
               
               
               Cow position:chr28:5074714-5074427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:57-337
               
               
               Cow position:chr28:25282995-25283286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:57-350
               
               
               Cow position:chr28:23410533-23410218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:57-352
               
               
               Cow position:chr28:5437301-5436982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:57-362
               
               
               Cow position:chr28:7268145-7267828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:58-189
               
               
               Cow position:chr28:8628985-8628851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 106

               
               
               Conread position:58-254
               
               
               Cow position:chr28:2124222-2124428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:58-286
               
               
               Cow position:chr28:17288016-17288246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:58-343
               
               
               Cow position:chr28:21598462-21598154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-347
               
               
               Cow position:chr28:13865637-13865941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:58-347
               
               
               Cow position:chr28:26614680-26614975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:58-349
               
               
               Cow position:chr28:13693542-13693852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:58-350
               
               
               Cow position:chr28:2898787-2899094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):41, 163

               
               
               Conread position:58-350
               
               
               Cow position:chr28:5236811-5236500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 168

               
               
               Conread position:58-350
               
               
               Cow position:chr28:16386714-16386414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):67, 41

               
               
               Conread position:58-350
               
               
               Cow position:chr28:25596424-25596733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:58-417
               
               
               Cow position:chr28:30293798-30293419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 176

               
               
               Conread position:59-288
               
               
               Cow position:chr28:18790803-18791049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 183

               
               
               Conread position:59-350
               
               
               Cow position:chr28:5817639-5817946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:59-350
               
               
               Cow position:chr28:26719152-26719448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):127, 36

               
               
               Conread position:60-273
               
               
               Cow position:chr28:19394424-19394637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:60-276
               
               
               Cow position:chr28:4880470-4880243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:60-286
               
               
               Cow position:chr28:17638073-17637838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:60-325
               
               
               Cow position:chr28:10745003-10745294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 171

               
               
               Conread position:61-274
               
               
               Cow position:chr28:22739595-22739811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:62-351
               
               
               Cow position:chr28:10606826-10606529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:62-392
               
               
               Cow position:chr28:5684505-5684848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:64-310
               
               
               Cow position:chr28:616190-616443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:64-350
               
               
               Cow position:chr28:7684881-7684600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 166

               
               
               Conread position:66-286
               
               
               Cow position:chr28:25459325-25459564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 236

               
               
               Conread position:66-367
               
               
               Cow position:chr28:5224512-5224820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:70-345
               
               
               Cow position:chr28:4809597-4809879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:72-350
               
               
               Cow position:chr28:4881440-4881136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):10, 172

               
               
               Conread position:75-317
               
               
               Cow position:chr28:10999860-10999598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:75-350
               
               
               Cow position:chr28:26982938-26982634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 176

               
               
               Conread position:77-286
               
               
               Cow position:chr28:23724645-23724431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:77-350
               
               
               Cow position:chr28:24966203-24966492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:80-350
               
               
               Cow position:chr28:18760229-18759950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:81-276
               
               
               Cow position:chr28:19023947-19024166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:81-287
               
               
               Cow position:chr28:22279378-22279168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:81-350
               
               
               Cow position:chr28:11866855-11866561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:84-350
               
               
               Cow position:chr28:25728023-25728299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:85-276
               
               
               Cow position:chr28:118237-118029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:86-293
               
               
               Cow position:chr28:28903847-28903625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:87-352
               
               
               Cow position:chr28:4016360-4016638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:90-346
               
               
               Cow position:chr28:20409216-20409488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:93-351
               
               
               Cow position:chr28:32365672-32365950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:98-345
               
               
               Cow position:chr28:18186392-18186656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:100-285
               
               
               Cow position:chr28:8291270-8291458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:100-286
               
               
               Cow position:chr28:9928446-9928261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):120, 158

               
               
               Conread position:100-344
               
               
               Cow position:chr28:33884246-33884500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:100-350
               
               
               Cow position:chr28:2752662-2752389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:100-350
               
               
               Cow position:chr28:4643928-4643665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:100-350
               
               
               Cow position:chr28:11829103-11828857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:100-352
               
               
               Cow position:chr28:21363581-21363847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:103-286
               
               
               Cow position:chr28:33032103-33032292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 186

               
               
               Conread position:105-359
               
               
               Cow position:chr28:1538012-1538275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:110-346
               
               
               Cow position:chr28:22571816-22571567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:111-350
               
               
               Cow position:chr28:24082116-24082375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:114-280
               
               
               Cow position:chr28:9812135-9812303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 48

               
               
               Conread position:123-350
               
               
               Cow position:chr28:10863921-10863687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:123-350
               
               
               Cow position:chr28:30746867-30746624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:123-366
               
               
               Cow position:chr28:27161469-27161207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:129-346
               
               
               Cow position:chr28:5193187-5193433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:130-346
               
               
               Cow position:chr28:11079175-11079403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 5

               
               
               Conread position:153-350
               
               
               Cow position:chr28:19564338-19564123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:159-346
               
               
               Cow position:chr28:32366341-32366148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:185-350
               
               
               Cow position:chr28:30865350-30865522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 6

               
               
               Conread position:186-348
               
               
               Cow position:chr28:7372189-7372019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:186-350
               
               
               Cow position:chr28:32174562-32174734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:187-350
               
               
               Cow position:chr28:4013020-4013189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:188-350
               
               
               Cow position:chr28:7388832-7388667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:191-350
               
               
               Cow position:chr28:7619215-7619045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:194-350
               
               
               Cow position:chr28:20759761-20759597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:194-351
               
               
               Cow position:chr28:4873408-4873238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:223-350
               
               
               Cow position:chr28:19216790-19216926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:48-346
               
               
               Cow position:chr29:12761744-12762049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):139, 6

               
               
               Conread position:49-288
               
               
               Cow position:chr29:477879-478134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:49-349
               
               
               Cow position:chr29:13553909-13554233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:50-286
               
               
               Cow position:chr29:463879-463631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 245

               
               
               Conread position:51-291
               
               
               Cow position:chr29:31786456-31786697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 171

               
               
               Conread position:51-344
               
               
               Cow position:chr29:7408110-7407813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:51-352
               
               
               Cow position:chr29:4492259-4491952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:55-169
               
               
               Cow position:chr29:29066208-29066325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:55-198
               
               
               Cow position:chr29:40902938-40902792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-247
               
               
               Cow position:chr29:21236898-21237098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:55-260
               
               
               Cow position:chr29:12798712-12798919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:55-285
               
               
               Cow position:chr29:26771222-26771461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:55-286
               
               
               Cow position:chr29:22068965-22068717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 245

               
               
               Conread position:55-319
               
               
               Cow position:chr29:16756836-16757102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):44, 169

               
               
               Conread position:55-327
               
               
               Cow position:chr29:6925801-6926080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):129, 44

               
               
               Conread position:55-330
               
               
               Cow position:chr29:17323-17034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:55-330
               
               
               Cow position:chr29:17668277-17668565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-346
               
               
               Cow position:chr29:19762054-19762362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:55-347
               
               
               Cow position:chr29:36216899-36217207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-350
               
               
               Cow position:chr29:2644526-2644214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:55-350
               
               
               Cow position:chr29:11915598-11915918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-350
               
               
               Cow position:chr29:17222190-17222511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):48, 194

               
               
               Conread position:55-350
               
               
               Cow position:chr29:35501867-35501556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:55-350
               
               
               Cow position:chr29:39567469-39567780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:55-350
               
               
               Cow position:chr29:40891920-40891609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:55-351
               
               
               Cow position:chr29:27858573-27858887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:55-363
               
               
               Cow position:chr29:28775673-28775352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:55-364
               
               
               Cow position:chr29:23844613-23844952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:56-184
               
               
               Cow position:chr29:686409-686272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr29:13458841-13458973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr29:19389269-19389410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 36

               
               
               Conread position:56-207
               
               
               Cow position:chr29:13615860-13615703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:56-212
               
               
               Cow position:chr29:585064-585223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-215
               
               
               Cow position:chr29:29312732-29312565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:56-223
               
               
               Cow position:chr29:18735860-18735678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-244
               
               
               Cow position:chr29:3711169-3711375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-259
               
               
               Cow position:chr29:3395893-3396105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-260
               
               
               Cow position:chr29:35281283-35281496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-274
               
               
               Cow position:chr29:2623697-2623467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-276
               
               
               Cow position:chr29:26734816-26735043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-277
               
               
               Cow position:chr29:3502840-3503071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:56-279
               
               
               Cow position:chr29:19338762-19339007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr29:18748804-18748584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 136

               
               
               Conread position:56-280
               
               
               Cow position:chr29:20178342-20178116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-281
               
               
               Cow position:chr29:35738487-35738253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:56-285
               
               
               Cow position:chr29:6217764-6217532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:56-286
               
               
               Cow position:chr29:1395388-1395620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:56-286
               
               
               Cow position:chr29:2522361-2522588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:56-286
               
               
               Cow position:chr29:4367503-4367749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 203

               
               
               Conread position:56-286
               
               
               Cow position:chr29:9686218-9685984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 91

               
               
               Conread position:56-286
               
               
               Cow position:chr29:12004982-12004739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-286
               
               
               Cow position:chr29:18212200-18211971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:56-286
               
               
               Cow position:chr29:19428446-19428682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-286
               
               
               Cow position:chr29:39642959-39643199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:56-287
               
               
               Cow position:chr29:26334607-26334362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-288
               
               
               Cow position:chr29:41747223-41747474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-291
               
               
               Cow position:chr29:37961195-37960945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-313
               
               
               Cow position:chr29:32767738-32767485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:56-314
               
               
               Cow position:chr29:4625210-4624938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:56-327
               
               
               Cow position:chr29:40166025-40166319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:56-330
               
               
               Cow position:chr29:37599422-37599137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:56-332
               
               
               Cow position:chr29:14501373-14501673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-336
               
               
               Cow position:chr29:2744489-2744183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-337
               
               
               Cow position:chr29:11562397-11562698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-337
               
               
               Cow position:chr29:34700031-34699756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:56-337
               
               
               Cow position:chr29:41530632-41530935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:56-341
               
               
               Cow position:chr29:94766-94480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-341
               
               
               Cow position:chr29:868555-868864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-341
               
               
               Cow position:chr29:26329997-26330287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):49, 6

               
               
               Conread position:56-343
               
               
               Cow position:chr29:22714945-22714631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-345
               
               
               Cow position:chr29:15940855-15940537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:56-345
               
               
               Cow position:chr29:26263634-26263929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-346
               
               
               Cow position:chr29:356109-356415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:56-346
               
               
               Cow position:chr29:5948004-5947712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:56-346
               
               
               Cow position:chr29:17109754-17110051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:56-346
               
               
               Cow position:chr29:19949092-19949401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:56-346
               
               
               Cow position:chr29:22162468-22162155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-346
               
               
               Cow position:chr29:25737633-25737320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-346
               
               
               Cow position:chr29:26778667-26778976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-347
               
               
               Cow position:chr29:4520118-4520431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr29:6844847-6844537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):46, 164

               
               
               Conread position:56-347
               
               
               Cow position:chr29:10653130-10653427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:56-347
               
               
               Cow position:chr29:23984180-23983860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-347
               
               
               Cow position:chr29:32521651-32521965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-349
               
               
               Cow position:chr29:9911960-9912272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-349
               
               
               Cow position:chr29:34744834-34744533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 268

               
               
               Conread position:56-350
               
               
               Cow position:chr29:1229391-1229705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):53, 207

               
               
               Conread position:56-350
               
               
               Cow position:chr29:2984667-2984988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr29:4120628-4120951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-350
               
               
               Cow position:chr29:6635887-6636177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):226, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr29:8926676-8926363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr29:9638529-9638223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr29:13639584-13639268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr29:16309533-16309839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr29:17409112-17409432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):17, 180

               
               
               Conread position:56-350
               
               
               Cow position:chr29:19821079-19821381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):115, 42

               
               
               Conread position:56-350
               
               
               Cow position:chr29:20903505-20903192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr29:23155033-23155324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr29:24292659-24292966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:56-350
               
               
               Cow position:chr29:25333671-25333364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:56-350
               
               
               Cow position:chr29:25474690-25475021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr29:26615942-26615619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr29:29056967-29057272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-350
               
               
               Cow position:chr29:29769563-29769253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr29:31926507-31926202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr29:31928762-31929085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:56-350
               
               
               Cow position:chr29:32799920-32799614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr29:32963337-32963635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr29:35291882-35292190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr29:35458988-35458674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):101, 136

               
               
               Conread position:56-350
               
               
               Cow position:chr29:35677762-35677446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr29:40117351-40117669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:56-350
               
               
               Cow position:chr29:40299230-40298923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:56-351
               
               
               Cow position:chr29:707162-706857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:56-351
               
               
               Cow position:chr29:6286375-6286063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-351
               
               
               Cow position:chr29:25088536-25088841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-351
               
               
               Cow position:chr29:40583580-40583885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-352
               
               
               Cow position:chr29:4194338-4194028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-352
               
               
               Cow position:chr29:24624030-24624347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-353
               
               
               Cow position:chr29:34745872-34745559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:56-354
               
               
               Cow position:chr29:36586361-36586668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-355
               
               
               Cow position:chr29:22936062-22936374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-360
               
               
               Cow position:chr29:28868415-28868751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:56-362
               
               
               Cow position:chr29:44236248-44236564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:56-366
               
               
               Cow position:chr29:11704905-11705226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-366
               
               
               Cow position:chr29:12784172-12783850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:56-366
               
               
               Cow position:chr29:23697761-23698093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:56-367
               
               
               Cow position:chr29:42771444-42771752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:57-281
               
               
               Cow position:chr29:10456769-10456543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:57-341
               
               
               Cow position:chr29:109493-109776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 124

               
               
               Conread position:57-342
               
               
               Cow position:chr29:39111524-39111222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:57-343
               
               
               Cow position:chr29:16195636-16195931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):42, 173

               
               
               Conread position:57-350
               
               
               Cow position:chr29:1325221-1325537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-350
               
               
               Cow position:chr29:7966030-7966343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:57-350
               
               
               Cow position:chr29:12679938-12680254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr29:16657469-16657793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:57-350
               
               
               Cow position:chr29:22175474-22175779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:57-350
               
               
               Cow position:chr29:28195733-28195423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 188

               
               
               Conread position:57-350
               
               
               Cow position:chr29:31489103-31489416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:57-350
               
               
               Cow position:chr29:43495843-43496137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:58-269
               
               
               Cow position:chr29:11696318-11696537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:58-288
               
               
               Cow position:chr29:14484761-14484511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-310
               
               
               Cow position:chr29:2532846-2533105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-318
               
               
               Cow position:chr29:2071784-2071505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:58-327
               
               
               Cow position:chr29:24103764-24103466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:58-350
               
               
               Cow position:chr29:87237-86914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 317

               
               
               Conread position:58-350
               
               
               Cow position:chr29:5892631-5892943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:58-350
               
               
               Cow position:chr29:6293683-6293382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:58-350
               
               
               Cow position:chr29:24952469-24952783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:58-350
               
               
               Cow position:chr29:28166433-28166124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:58-350
               
               
               Cow position:chr29:40096741-40097059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):41, 313

               
               
               Conread position:59-287
               
               
               Cow position:chr29:699830-699590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 171

               
               
               Conread position:59-342
               
               
               Cow position:chr29:30440711-30441026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 302

               
               
               Conread position:59-350
               
               
               Cow position:chr29:19756234-19756527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:60-344
               
               
               Cow position:chr29:22778395-22778081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:60-350
               
               
               Cow position:chr29:732404-732715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:60-350
               
               
               Cow position:chr29:27816156-27816447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:61-285
               
               
               Cow position:chr29:6337450-6337685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 233

               
               
               Conread position:61-290
               
               
               Cow position:chr29:4328221-4328446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:61-350
               
               
               Cow position:chr29:44378631-44378321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):38, 196

               
               
               Conread position:61-351
               
               
               Cow position:chr29:38580763-38581078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:62-346
               
               
               Cow position:chr29:24578668-24578957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:62-366
               
               
               Cow position:chr29:26654252-26653930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 174

               
               
               Conread position:64-280
               
               
               Cow position:chr29:44901914-44901686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:65-350
               
               
               Cow position:chr29:26318982-26319264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:66-342
               
               
               Cow position:chr29:41364902-41365199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:70-350
               
               
               Cow position:chr29:1022086-1022394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 182

               
               
               Conread position:70-350
               
               
               Cow position:chr29:17154572-17154876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):118, 29

               
               
               Conread position:72-322
               
               
               Cow position:chr29:23710300-23710554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:72-346
               
               
               Cow position:chr29:39329798-39329509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:73-334
               
               
               Cow position:chr29:22613227-22613512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:73-345
               
               
               Cow position:chr29:11433922-11434212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):26, 162

               
               
               Conread position:73-350
               
               
               Cow position:chr29:750107-749809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 257

               
               
               Conread position:74-332
               
               
               Cow position:chr29:3100461-3100187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:74-350
               
               
               Cow position:chr29:10818636-10818352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:74-366
               
               
               Cow position:chr29:25091910-25092220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:76-350
               
               
               Cow position:chr29:11054051-11053762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:77-364
               
               
               Cow position:chr29:28979676-28979389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):24, 146

               
               
               Conread position:80-343
               
               
               Cow position:chr29:30188534-30188261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):19, 214

               
               
               Conread position:82-350
               
               
               Cow position:chr29:32211251-32210973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:84-342
               
               
               Cow position:chr29:4334538-4334808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 159

               
               
               Conread position:85-353
               
               
               Cow position:chr29:11646915-11647195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:86-350
               
               
               Cow position:chr29:34359989-34359724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:97-350
               
               
               Cow position:chr29:10156475-10156208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:98-350
               
               
               Cow position:chr29:8669192-8669451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 140

               
               
               Conread position:99-353
               
               
               Cow position:chr29:25815005-25814737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 124

               
               
               Conread position:100-345
               
               
               Cow position:chr29:10235298-10235041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:100-347
               
               
               Cow position:chr29:24252066-24252330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:105-280
               
               
               Cow position:chr29:25432236-25432415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:105-350
               
               
               Cow position:chr29:4085152-4085406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:108-286
               
               
               Cow position:chr29:29295727-29295896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:109-226
               
               
               Cow position:chr29:5064324-5064443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:109-336
               
               
               Cow position:chr29:26298825-26299053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):109, 35

               
               
               Conread position:110-276
               
               
               Cow position:chr29:19186587-19186754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:111-350
               
               
               Cow position:chr29:2055899-2056159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:111-351
               
               
               Cow position:chr29:11398081-11397826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):75, 40

               
               
               Conread position:113-350
               
               
               Cow position:chr29:26416201-26416449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:114-350
               
               
               Cow position:chr29:12025629-12025379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:119-336
               
               
               Cow position:chr29:4052134-4051907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:124-347
               
               
               Cow position:chr29:44008927-44008690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):53, 133

               
               
               Conread position:124-407
               
               
               Cow position:chr29:9455199-9454904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:145-350
               
               
               Cow position:chr29:30227399-30227185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:146-350
               
               
               Cow position:chr29:19250232-19250431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:179-350
               
               
               Cow position:chr29:5210406-5210589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:186-350
               
               
               Cow position:chr29:6015048-6015224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr29:12626053-12625878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr29:13028363-13028538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr29:21645250-21645407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 35

               
               
               Conread position:186-353
               
               
               Cow position:chr29:2263071-2262894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 51

               
               
               Conread position:187-350
               
               
               Cow position:chr29:20770270-20770442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:188-350
               
               
               Cow position:chr29:8004995-8004829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:190-345
               
               
               Cow position:chr29:40633576-40633735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 47

               
               
               Conread position:201-350
               
               
               Cow position:chr29:43544661-43544505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:227-366
               
               
               Cow position:chr29:396377-396519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):6, 138

               
               
               Conread position:233-350
               
               
               Cow position:chr29:40791281-40791401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:40-286
               
               
               Cow position:chr3:55106699-55106438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 198

               
               
               Conread position:49-287
               
               
               Cow position:chr3:79592134-79591888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:49-335
               
               
               Cow position:chr3:56125502-56125794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:49-350
               
               
               Cow position:chr3:27940375-27940067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:50-193
               
               
               Cow position:chr3:14280599-14280748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:50-352
               
               
               Cow position:chr3:50762879-50763198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 125

               
               
               Conread position:51-332
               
               
               Cow position:chr3:34937596-34937902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):48, 116

               
               
               Conread position:52-276
               
               
               Cow position:chr3:3164738-3164503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:55-184
               
               
               Cow position:chr3:80922328-80922461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:55-192
               
               
               Cow position:chr3:59701773-59701909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:55-194
               
               
               Cow position:chr3:68514790-68514657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:55-205
               
               
               Cow position:chr3:34392337-34392179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:55-212
               
               
               Cow position:chr3:58383728-58383896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-213
               
               
               Cow position:chr3:13512977-13512816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:55-226
               
               
               Cow position:chr3:11292691-11292523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):104, 39

               
               
               Conread position:55-231
               
               
               Cow position:chr3:22872292-22872096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-267
               
               
               Cow position:chr3:5899585-5899808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:55-273
               
               
               Cow position:chr3:70333716-70333492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:55-278
               
               
               Cow position:chr3:61678451-61678699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-280
               
               
               Cow position:chr3:5851168-5850933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 111

               
               
               Conread position:55-281
               
               
               Cow position:chr3:42483660-42483905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-286
               
               
               Cow position:chr3:18763654-18763891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:55-286
               
               
               Cow position:chr3:72018879-72019120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:55-314
               
               
               Cow position:chr3:73961919-73961658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:55-318
               
               
               Cow position:chr3:83920958-83921228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):44, 174

               
               
               Conread position:55-332
               
               
               Cow position:chr3:27289697-27289998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):41, 174

               
               
               Conread position:55-342
               
               
               Cow position:chr3:2674789-2675097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:55-345
               
               
               Cow position:chr3:12286995-12287293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:55-346
               
               
               Cow position:chr3:78946076-78945767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:55-350
               
               
               Cow position:chr3:2024944-2025273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):44, 323

               
               
               Conread position:55-350
               
               
               Cow position:chr3:4031728-4032039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:55-350
               
               
               Cow position:chr3:5365446-5365752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):106, 44

               
               
               Conread position:55-350
               
               
               Cow position:chr3:7678431-7678729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:55-350
               
               
               Cow position:chr3:8393106-8393420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):44, 192

               
               
               Conread position:55-350
               
               
               Cow position:chr3:14626392-14626075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:55-350
               
               
               Cow position:chr3:18066894-18067207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:55-350
               
               
               Cow position:chr3:38346961-38347266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:55-350
               
               
               Cow position:chr3:50768438-50768755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 113

               
               
               Conread position:55-350
               
               
               Cow position:chr3:51234336-51234020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:55-350
               
               
               Cow position:chr3:51578561-51578251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:55-350
               
               
               Cow position:chr3:58767039-58767339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 38

               
               
               Conread position:55-350
               
               
               Cow position:chr3:59799014-59799324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:55-350
               
               
               Cow position:chr3:70899660-70899966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:55-350
               
               
               Cow position:chr3:75046112-75045800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:55-350
               
               
               Cow position:chr3:75570682-75570378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:55-350
               
               
               Cow position:chr3:77006265-77006547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:55-350
               
               
               Cow position:chr3:80581431-80581731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 59

               
               
               Conread position:55-350
               
               
               Cow position:chr3:83455392-83455076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 289

               
               
               Conread position:55-351
               
               
               Cow position:chr3:55010395-55010088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:55-352
               
               
               Cow position:chr3:13302096-13301773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):31, 183

               
               
               Conread position:55-352
               
               
               Cow position:chr3:53046897-53046585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:55-364
               
               
               Cow position:chr3:65058461-65058789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:55-367
               
               
               Cow position:chr3:33253121-33252797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 135

               
               
               Conread position:56-182
               
               
               Cow position:chr3:11640195-11640323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr3:18607130-18607262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-182
               
               
               Cow position:chr3:36657009-36656879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr3:51609577-51609711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr3:30055685-30055554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-187
               
               
               Cow position:chr3:61262564-61262699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-190
               
               
               Cow position:chr3:18854854-18854993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 56

               
               
               Conread position:56-205
               
               
               Cow position:chr3:48530398-48530549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-205
               
               
               Cow position:chr3:53903947-53904102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:56-208
               
               
               Cow position:chr3:65020095-65020253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-212
               
               
               Cow position:chr3:19198442-19198600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:56-220
               
               
               Cow position:chr3:74088413-74088232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-225
               
               
               Cow position:chr3:56704776-56704601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-226
               
               
               Cow position:chr3:6853740-6853561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:56-236
               
               
               Cow position:chr3:31903349-31903160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-236
               
               
               Cow position:chr3:66978604-66978792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 126

               
               
               Conread position:56-239
               
               
               Cow position:chr3:70468043-70467869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-250
               
               
               Cow position:chr3:27285986-27286196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-250
               
               
               Cow position:chr3:42588110-42588326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-250
               
               
               Cow position:chr3:45307695-45307902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-252
               
               
               Cow position:chr3:82359806-82360011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 149

               
               
               Conread position:56-258
               
               
               Cow position:chr3:13118106-13118316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 139

               
               
               Conread position:56-265
               
               
               Cow position:chr3:25691510-25691732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:56-266
               
               
               Cow position:chr3:4087405-4087177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-267
               
               
               Cow position:chr3:67161692-67161927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-269
               
               
               Cow position:chr3:17952417-17952643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-270
               
               
               Cow position:chr3:41328216-41328429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 65

               
               
               Conread position:56-272
               
               
               Cow position:chr3:30701083-30701298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:56-272
               
               
               Cow position:chr3:49731877-49731651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:56-273
               
               
               Cow position:chr3:78201028-78201257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-276
               
               
               Cow position:chr3:41367223-41366988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-276
               
               
               Cow position:chr3:63861140-63860897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-277
               
               
               Cow position:chr3:44535006-44534766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):52, 198

               
               
               Conread position:56-279
               
               
               Cow position:chr3:16362977-16362740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-279
               
               
               Cow position:chr3:48578602-48578834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:56-279
               
               
               Cow position:chr3:74409252-74409480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:56-279
               
               
               Cow position:chr3:79208242-79207991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr3:28692669-28692433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:56-280
               
               
               Cow position:chr3:31771459-31771678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:56-280
               
               
               Cow position:chr3:44623138-44622890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 199

               
               
               Conread position:56-286
               
               
               Cow position:chr3:7763425-7763657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 171

               
               
               Conread position:56-286
               
               
               Cow position:chr3:14633226-14632982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:56-286
               
               
               Cow position:chr3:17895615-17895845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:56-286
               
               
               Cow position:chr3:19708340-19708103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 9

               
               
               Conread position:56-286
               
               
               Cow position:chr3:20471599-20471363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:56-286
               
               
               Cow position:chr3:23876759-23876998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-286
               
               
               Cow position:chr3:29507357-29507583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:56-286
               
               
               Cow position:chr3:37186594-37186828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:56-286
               
               
               Cow position:chr3:42177919-42178158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:56-286
               
               
               Cow position:chr3:45524025-45524268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:56-286
               
               
               Cow position:chr3:49218547-49218313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:56-286
               
               
               Cow position:chr3:52650772-52650527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 109

               
               
               Conread position:56-286
               
               
               Cow position:chr3:54434734-54434977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 233

               
               
               Conread position:56-286
               
               
               Cow position:chr3:68583242-68583003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 236

               
               
               Conread position:56-286
               
               
               Cow position:chr3:69849741-69849506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-286
               
               
               Cow position:chr3:77188203-77188439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:56-286
               
               
               Cow position:chr3:83201767-83201524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:56-287
               
               
               Cow position:chr3:31206633-31206879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-288
               
               
               Cow position:chr3:16157441-16157680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 120

               
               
               Conread position:56-288
               
               
               Cow position:chr3:23477997-23478231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-288
               
               
               Cow position:chr3:58540772-58540526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-288
               
               
               Cow position:chr3:76172901-76172665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-291
               
               
               Cow position:chr3:15387972-15388221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-291
               
               
               Cow position:chr3:17451173-17450932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-291
               
               
               Cow position:chr3:43528476-43528230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 234

               
               
               Conread position:56-291
               
               
               Cow position:chr3:68647921-68648173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-297
               
               
               Cow position:chr3:59514872-59515117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-298
               
               
               Cow position:chr3:27544568-27544319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-305
               
               
               Cow position:chr3:54959951-54960211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 118

               
               
               Conread position:56-305
               
               
               Cow position:chr3:75057358-75057104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:56-314
               
               
               Cow position:chr3:67929505-67929221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:56-326
               
               
               Cow position:chr3:30463405-30463120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-329
               
               
               Cow position:chr3:81277942-81277637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:56-331
               
               
               Cow position:chr3:66610077-66609787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-332
               
               
               Cow position:chr3:53572989-53572694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-332
               
               
               Cow position:chr3:54050258-54049973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):62, 147

               
               
               Conread position:56-335
               
               
               Cow position:chr3:31309594-31309293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-335
               
               
               Cow position:chr3:48252655-48252946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:56-337
               
               
               Cow position:chr3:16077658-16077935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-340
               
               
               Cow position:chr3:39171723-39171421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-342
               
               
               Cow position:chr3:69750939-69750643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 141

               
               
               Conread position:56-343
               
               
               Cow position:chr3:7331356-7331059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:56-344
               
               
               Cow position:chr3:18393623-18393324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-344
               
               
               Cow position:chr3:23471707-23471389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-344
               
               
               Cow position:chr3:23496799-23496509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 128

               
               
               Conread position:56-344
               
               
               Cow position:chr3:37041188-37041489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-344
               
               
               Cow position:chr3:53588629-53588315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 201

               
               
               Conread position:56-344
               
               
               Cow position:chr3:58286137-58285840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:56-344
               
               
               Cow position:chr3:73764435-73764130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-345
               
               
               Cow position:chr3:23445129-23444817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:56-345
               
               
               Cow position:chr3:26553951-26553644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-345
               
               
               Cow position:chr3:49793170-49793464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-345
               
               
               Cow position:chr3:64281175-64280859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-346
               
               
               Cow position:chr3:72176-72501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:56-346
               
               
               Cow position:chr3:5374094-5374400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:56-346
               
               
               Cow position:chr3:19006428-19006729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:56-346
               
               
               Cow position:chr3:25754797-25755092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:56-346
               
               
               Cow position:chr3:26219301-26218979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-346
               
               
               Cow position:chr3:39970111-39969790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-346
               
               
               Cow position:chr3:52652313-52652008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-346
               
               
               Cow position:chr3:53384522-53384209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):70, 311

               
               
               Conread position:56-346
               
               
               Cow position:chr3:80564721-80565038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:56-347
               
               
               Cow position:chr3:8060893-8061199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-347
               
               
               Cow position:chr3:12675275-12674970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 150

               
               
               Conread position:56-347
               
               
               Cow position:chr3:13577425-13577129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-347
               
               
               Cow position:chr3:53739429-53739112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-347
               
               
               Cow position:chr3:64172206-64172513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:56-347
               
               
               Cow position:chr3:66708311-66707994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:56-347
               
               
               Cow position:chr3:70401663-70401969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-347
               
               
               Cow position:chr3:82460945-82461252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:56-348
               
               
               Cow position:chr3:3556304-3556618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 310

               
               
               Conread position:56-348
               
               
               Cow position:chr3:6689755-6690073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-349
               
               
               Cow position:chr3:44861547-44861238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-350
               
               
               Cow position:chr3:56610-56301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:56-350
               
               
               Cow position:chr3:210084-210395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr3:525115-525422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr3:1830802-1830501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr3:2506720-2506403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-350
               
               
               Cow position:chr3:2680272-2680588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-350
               
               
               Cow position:chr3:3032156-3032482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:56-350
               
               
               Cow position:chr3:3985091-3985397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr3:5096965-5097283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr3:6873484-6873176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:56-350
               
               
               Cow position:chr3:7566658-7566342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 310

               
               
               Conread position:56-350
               
               
               Cow position:chr3:9641325-9641644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr3:9663426-9663097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-350
               
               
               Cow position:chr3:12712162-12711839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr3:13330012-13329710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-350
               
               
               Cow position:chr3:14552639-14552951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr3:16255039-16254765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:56-350
               
               
               Cow position:chr3:16752492-16752183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr3:17935162-17934862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr3:17937078-17936763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr3:18686677-18686982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr3:26903876-26904186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:56-350
               
               
               Cow position:chr3:28898462-28898148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-350
               
               
               Cow position:chr3:29360377-29360075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr3:29887663-29887344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:56-350
               
               
               Cow position:chr3:30179844-30180161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):43, 312

               
               
               Conread position:56-350
               
               
               Cow position:chr3:32584919-32585226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:56-350
               
               
               Cow position:chr3:35852707-35852395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr3:42423570-42423253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 311

               
               
               Conread position:56-350
               
               
               Cow position:chr3:45534539-45534220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr3:48241382-48241689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-350
               
               
               Cow position:chr3:48362844-48363148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-350
               
               
               Cow position:chr3:49230771-49231075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 232

               
               
               Conread position:56-350
               
               
               Cow position:chr3:49482948-49482641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 211

               
               
               Conread position:56-350
               
               
               Cow position:chr3:49650140-49650463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 317

               
               
               Conread position:56-350
               
               
               Cow position:chr3:52607944-52608258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr3:53112930-53113250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr3:54740111-54739811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr3:54945885-54946207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr3:55272282-55271969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:56-350
               
               
               Cow position:chr3:55970265-55970582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-350
               
               
               Cow position:chr3:56059568-56059887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr3:56476443-56476758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr3:59101596-59101903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:56-350
               
               
               Cow position:chr3:59208575-59208870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr3:59392349-59392053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:56-350
               
               
               Cow position:chr3:59473873-59474198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:56-350
               
               
               Cow position:chr3:59604631-59604919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):138, 59

               
               
               Conread position:56-350
               
               
               Cow position:chr3:60597309-60597617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr3:61009666-61009366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:56-350
               
               
               Cow position:chr3:61840050-61840351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr3:63179629-63179918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:56-350
               
               
               Cow position:chr3:65968915-65969243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr3:66900981-66900658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 317

               
               
               Conread position:56-350
               
               
               Cow position:chr3:67744867-67744552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr3:69961950-69961661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr3:70334940-70334619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-350
               
               
               Cow position:chr3:71231167-71231470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):106, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr3:71237918-71238228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr3:71430451-71430128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr3:71497384-71497062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr3:73394877-73395191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-350
               
               
               Cow position:chr3:73460739-73461042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:56-350
               
               
               Cow position:chr3:74600878-74601190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):127, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr3:75479773-75480075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr3:77365533-77365214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:56-350
               
               
               Cow position:chr3:78076950-78077266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr3:79292595-79292904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-350
               
               
               Cow position:chr3:80053773-80053467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr3:81087848-81087563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:56-350
               
               
               Cow position:chr3:81471340-81471021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-350
               
               
               Cow position:chr3:83816032-83815712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-351
               
               
               Cow position:chr3:7338013-7337706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-351
               
               
               Cow position:chr3:45881670-45881975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-351
               
               
               Cow position:chr3:53270587-53270906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-351
               
               
               Cow position:chr3:57763984-57764295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-351
               
               
               Cow position:chr3:59630738-59630435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-351
               
               
               Cow position:chr3:59649019-59649334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:56-351
               
               
               Cow position:chr3:61143854-61144172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 170

               
               
               Conread position:56-351
               
               
               Cow position:chr3:73708810-73709124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-351
               
               
               Cow position:chr3:83490837-83491161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-352
               
               
               Cow position:chr3:2393205-2392890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-352
               
               
               Cow position:chr3:20675118-20674800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:56-352
               
               
               Cow position:chr3:43233264-43233583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-352
               
               
               Cow position:chr3:65236786-65237101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:56-352
               
               
               Cow position:chr3:72473668-72473992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 316

               
               
               Conread position:56-352
               
               
               Cow position:chr3:82056357-82056041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 194

               
               
               Conread position:56-353
               
               
               Cow position:chr3:2216120-2216446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 317

               
               
               Conread position:56-353
               
               
               Cow position:chr3:17695244-17694927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 307

               
               
               Conread position:56-359
               
               
               Cow position:chr3:26920657-26920995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 233

               
               
               Conread position:56-359
               
               
               Cow position:chr3:47284598-47284898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-364
               
               
               Cow position:chr3:38691645-38691315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-364
               
               
               Cow position:chr3:44932269-44932605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-364
               
               
               Cow position:chr3:55124517-55124192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 300

               
               
               Conread position:56-364
               
               
               Cow position:chr3:60933176-60933507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:56-364
               
               
               Cow position:chr3:77271506-77271187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-366
               
               
               Cow position:chr3:5101000-5100681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-366
               
               
               Cow position:chr3:29813004-29813323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-366
               
               
               Cow position:chr3:83474508-83474839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:56-367
               
               
               Cow position:chr3:14465943-14465612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-367
               
               
               Cow position:chr3:18459759-18459435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-367
               
               
               Cow position:chr3:31225210-31225524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:56-367
               
               
               Cow position:chr3:65413515-65413185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:56-368
               
               
               Cow position:chr3:49119270-49118940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-369
               
               
               Cow position:chr3:72168960-72168636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):43, 236

               
               
               Conread position:57-250
               
               
               Cow position:chr3:58951383-58951581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:57-279
               
               
               Cow position:chr3:5416469-5416225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):42, 168

               
               
               Conread position:57-280
               
               
               Cow position:chr3:57554084-57553852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:57-286
               
               
               Cow position:chr3:17456507-17456267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 174

               
               
               Conread position:57-287
               
               
               Cow position:chr3:4861451-4861689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-288
               
               
               Cow position:chr3:33698483-33698735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-288
               
               
               Cow position:chr3:55947337-55947588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:57-314
               
               
               Cow position:chr3:22820331-22820610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:57-314
               
               
               Cow position:chr3:61171748-61171468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 166

               
               
               Conread position:57-344
               
               
               Cow position:chr3:54770766-54771077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-347
               
               
               Cow position:chr3:8393701-8394015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:57-347
               
               
               Cow position:chr3:72675849-72676164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:57-350
               
               
               Cow position:chr3:14601952-14601628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:57-350
               
               
               Cow position:chr3:29596156-29596464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):42, 290

               
               
               Conread position:57-350
               
               
               Cow position:chr3:58969134-58968827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:57-350
               
               
               Cow position:chr3:59588281-59588585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:57-350
               
               
               Cow position:chr3:75158127-75158431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:57-361
               
               
               Cow position:chr3:10347117-10347442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:57-363
               
               
               Cow position:chr3:57577456-57577785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:57-365
               
               
               Cow position:chr3:46900956-46901288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 186

               
               
               Conread position:57-366
               
               
               Cow position:chr3:57624229-57624555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:58-182
               
               
               Cow position:chr3:55970988-55971116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:58-190
               
               
               Cow position:chr3:29334751-29334613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-280
               
               
               Cow position:chr3:60892395-60892619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:58-326
               
               
               Cow position:chr3:65800356-65800637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:58-347
               
               
               Cow position:chr3:15685154-15684849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:58-348
               
               
               Cow position:chr3:52863422-52863111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:58-350
               
               
               Cow position:chr3:115970-116266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):128, 13

               
               
               Conread position:58-350
               
               
               Cow position:chr3:21081623-21081310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 204

               
               
               Conread position:58-350
               
               
               Cow position:chr3:51012770-51012478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 164

               
               
               Conread position:58-350
               
               
               Cow position:chr3:73443324-73443020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-366
               
               
               Cow position:chr3:67704303-67704637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:59-273
               
               
               Cow position:chr3:73590235-73590005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:59-288
               
               
               Cow position:chr3:46350423-46350677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 249

               
               
               Conread position:59-314
               
               
               Cow position:chr3:25673369-25673111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:59-315
               
               
               Cow position:chr3:17957230-17957507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:59-336
               
               
               Cow position:chr3:20437882-20437594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:59-344
               
               
               Cow position:chr3:52418729-52419007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:59-350
               
               
               Cow position:chr3:8733575-8733283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:59-350
               
               
               Cow position:chr3:15052181-15051874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):127, 61

               
               
               Conread position:59-350
               
               
               Cow position:chr3:28908431-28908127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:60-167
               
               
               Cow position:chr3:51033109-51033222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:60-257
               
               
               Cow position:chr3:15661935-15661728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 181

               
               
               Conread position:60-286
               
               
               Cow position:chr3:66375086-66375321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:60-327
               
               
               Cow position:chr3:31047184-31046899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 21

               
               
               Conread position:60-350
               
               
               Cow position:chr3:11711718-11712041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:60-350
               
               
               Cow position:chr3:14717571-14717845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:60-350
               
               
               Cow position:chr3:17447843-17447539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:60-350
               
               
               Cow position:chr3:27274298-27274604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:61-350
               
               
               Cow position:chr3:15192329-15192656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:61-350
               
               
               Cow position:chr3:68156496-68156799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:62-289
               
               
               Cow position:chr3:84000379-84000618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):37, 183

               
               
               Conread position:62-350
               
               
               Cow position:chr3:67930411-67930111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:62-352
               
               
               Cow position:chr3:15752861-15752558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:63-345
               
               
               Cow position:chr3:49140265-49139976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:64-340
               
               
               Cow position:chr3:42367730-42367448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:65-366
               
               
               Cow position:chr3:59333537-59333849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):34, 185

               
               
               Conread position:66-351
               
               
               Cow position:chr3:76015070-76015369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:67-286
               
               
               Cow position:chr3:68146064-68145842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:69-350
               
               
               Cow position:chr3:74134479-74134780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:70-286
               
               
               Cow position:chr3:26960820-26960587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 176

               
               
               Conread position:70-337
               
               
               Cow position:chr3:73759745-73759454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 98

               
               
               Conread position:70-342
               
               
               Cow position:chr3:64011042-64010744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:72-352
               
               
               Cow position:chr3:60265459-60265176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:73-338
               
               
               Cow position:chr3:68881338-68881057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:73-346
               
               
               Cow position:chr3:2198660-2198954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:73-350
               
               
               Cow position:chr3:68708230-68707937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:74-286
               
               
               Cow position:chr3:16656702-16656490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:74-286
               
               
               Cow position:chr3:22907938-22907727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:74-337
               
               
               Cow position:chr3:11063157-11063430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:75-350
               
               
               Cow position:chr3:45211075-45211376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):24, 295

               
               
               Conread position:76-268
               
               
               Cow position:chr3:55063087-55062887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 164

               
               
               Conread position:77-288
               
               
               Cow position:chr3:39328182-39328404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:79-327
               
               
               Cow position:chr3:74878806-74878536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):20, 163

               
               
               Conread position:80-277
               
               
               Cow position:chr3:25059858-25060073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 169

               
               
               Conread position:81-269
               
               
               Cow position:chr3:3062348-3062553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:81-330
               
               
               Cow position:chr3:76713536-76713269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:81-344
               
               
               Cow position:chr3:25477598-25477870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:81-350
               
               
               Cow position:chr3:70609408-70609702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:81-352
               
               
               Cow position:chr3:78896434-78896725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:82-344
               
               
               Cow position:chr3:4319497-4319781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):17, 160

               
               
               Conread position:85-351
               
               
               Cow position:chr3:59621848-59621571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:86-350
               
               
               Cow position:chr3:23105575-23105286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:90-350
               
               
               Cow position:chr3:57760293-57760573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 151

               
               
               Conread position:95-364
               
               
               Cow position:chr3:20678033-20677750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:96-350
               
               
               Cow position:chr3:67520374-67520091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 277

               
               
               Conread position:96-350
               
               
               Cow position:chr3:77581909-77582181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):11, 145

               
               
               Conread position:98-250
               
               
               Cow position:chr3:78739665-78739824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:98-347
               
               
               Cow position:chr3:7940752-7940484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:98-350
               
               
               Cow position:chr3:6182396-6182151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:99-353
               
               
               Cow position:chr3:67698084-67698354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:100-250
               
               
               Cow position:chr3:65380959-65381116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 115

               
               
               Conread position:100-286
               
               
               Cow position:chr3:15859861-15859665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:100-291
               
               
               Cow position:chr3:70631824-70632023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:100-343
               
               
               Cow position:chr3:55319097-55318828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:100-347
               
               
               Cow position:chr3:3637992-3638251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 140

               
               
               Conread position:100-348
               
               
               Cow position:chr3:27697173-27696906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 136

               
               
               Conread position:100-349
               
               
               Cow position:chr3:10896638-10896897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 62

               
               
               Conread position:100-350
               
               
               Cow position:chr3:14598756-14599013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 140

               
               
               Conread position:100-350
               
               
               Cow position:chr3:38828572-38828832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:100-350
               
               
               Cow position:chr3:55712235-55712515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 274

               
               
               Conread position:100-350
               
               
               Cow position:chr3:57273872-57274137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:100-350
               
               
               Cow position:chr3:61169606-61169875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 218

               
               
               Conread position:100-350
               
               
               Cow position:chr3:66884135-66883869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 144

               
               
               Conread position:101-367
               
               
               Cow position:chr3:44101776-44102059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 141

               
               
               Conread position:101-375
               
               
               Cow position:chr3:4050002-4050296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):52, 166

               
               
               Conread position:103-276
               
               
               Cow position:chr3:83708159-83707981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 124

               
               
               Conread position:103-346
               
               
               Cow position:chr3:54506520-54506779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:103-350
               
               
               Cow position:chr3:68586831-68587097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:104-267
               
               
               Cow position:chr3:27212172-27212347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:104-350
               
               
               Cow position:chr3:34669918-34669658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):22, 131

               
               
               Conread position:105-347
               
               
               Cow position:chr3:63269036-63269296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:105-350
               
               
               Cow position:chr3:76387785-76387532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:106-350
               
               
               Cow position:chr3:24872531-24872780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:108-350
               
               
               Cow position:chr3:20842042-20841798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:108-350
               
               
               Cow position:chr3:59596999-59597254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:108-350
               
               
               Cow position:chr3:76268164-76267899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:109-350
               
               
               Cow position:chr3:30222003-30222266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 130

               
               
               Conread position:109-350
               
               
               Cow position:chr3:49790993-49790737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:109-350
               
               
               Cow position:chr3:74502507-74502249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:110-344
               
               
               Cow position:chr3:54100902-54100656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:110-350
               
               
               Cow position:chr3:15751906-15751637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):12, 172

               
               
               Conread position:111-288
               
               
               Cow position:chr3:23037810-23037616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):46, 139

               
               
               Conread position:111-343
               
               
               Cow position:chr3:34556421-34556171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:111-346
               
               
               Cow position:chr3:60264895-60264644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:111-350
               
               
               Cow position:chr3:71423721-71423479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:111-350
               
               
               Cow position:chr3:84597143-84596889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:113-343
               
               
               Cow position:chr3:26981883-26982127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:115-355
               
               
               Cow position:chr3:70762302-70762042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:117-280
               
               
               Cow position:chr3:53192596-53192430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:117-367
               
               
               Cow position:chr3:3649383-3649132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:119-350
               
               
               Cow position:chr3:74846873-74846633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:120-347
               
               
               Cow position:chr3:48810808-48810572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:121-346
               
               
               Cow position:chr3:24935201-24935437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:123-350
               
               
               Cow position:chr3:19792724-19792980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 229

               
               
               Conread position:123-350
               
               
               Cow position:chr3:36418634-36418408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:124-366
               
               
               Cow position:chr3:35153454-35153708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:125-350
               
               
               Cow position:chr3:31850536-31850302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:127-350
               
               
               Cow position:chr3:59884237-59883993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:129-345
               
               
               Cow position:chr3:58765239-58765004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:131-347
               
               
               Cow position:chr3:58973143-58973369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:133-350
               
               
               Cow position:chr3:15153534-15153766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:138-346
               
               
               Cow position:chr3:46541981-46541757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:149-337
               
               
               Cow position:chr3:34871424-34871628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 184

               
               
               Conread position:151-344
               
               
               Cow position:chr3:3889708-3889499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:151-344
               
               
               Cow position:chr3:80468816-80468608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:151-350
               
               
               Cow position:chr3:48900479-48900257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:151-364
               
               
               Cow position:chr3:73820511-73820279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:154-285
               
               
               Cow position:chr3:28323044-28323178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:174-350
               
               
               Cow position:chr3:22165525-22165340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:179-351
               
               
               Cow position:chr3:23667520-23667698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:182-350
               
               
               Cow position:chr3:46006116-46005946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:185-360
               
               
               Cow position:chr3:81277569-81277382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:186-347
               
               
               Cow position:chr3:71238377-71238542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):34, 46

               
               
               Conread position:186-350
               
               
               Cow position:chr3:3471941-3472116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:186-350
               
               
               Cow position:chr3:3656417-3656589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:186-350
               
               
               Cow position:chr3:3818698-3818858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):102, 36

               
               
               Conread position:186-350
               
               
               Cow position:chr3:14194276-14194103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:186-350
               
               
               Cow position:chr3:17058637-17058470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:186-350
               
               
               Cow position:chr3:22221223-22221403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr3:35621206-35621377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:186-350
               
               
               Cow position:chr3:55983998-55984174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):44, 130

               
               
               Conread position:186-355
               
               
               Cow position:chr3:84175922-84175742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:186-364
               
               
               Cow position:chr3:15951008-15950823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:186-366
               
               
               Cow position:chr3:7661756-7661943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):23, 185

               
               
               Conread position:186-366
               
               
               Cow position:chr3:73298990-73299170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:188-345
               
               
               Cow position:chr3:65019960-65019794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:188-350
               
               
               Cow position:chr3:33693723-33693895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:188-350
               
               
               Cow position:chr3:47753129-47753302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:188-364
               
               
               Cow position:chr3:10103952-10104131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:189-343
               
               
               Cow position:chr3:61262977-61263126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:193-350
               
               
               Cow position:chr3:23804427-23804580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:204-349
               
               
               Cow position:chr3:10668958-10668804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:222-352
               
               
               Cow position:chr3:10026745-10026613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:230-350
               
               
               Cow position:chr3:7427948-7428074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:232-364
               
               
               Cow position:chr3:67959967-67959830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:8-273
               
               
               Cow position:chr4:36724771-36725047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):118, 91

               
               
               Conread position:42-350
               
               
               Cow position:chr4:16762969-16762634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 323

               
               
               Conread position:47-278
               
               
               Cow position:chr4:37465815-37465585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:48-350
               
               
               Cow position:chr4:10999934-10999623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:50-345
               
               
               Cow position:chr4:43515496-43515804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:52-351
               
               
               Cow position:chr4:6653509-6653816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:55-184
               
               
               Cow position:chr4:15462497-15462367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:55-219
               
               
               Cow position:chr4:12260005-12259828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-223
               
               
               Cow position:chr4:56514163-56513987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 97

               
               
               Conread position:55-258
               
               
               Cow position:chr4:43909528-43909736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:55-269
               
               
               Cow position:chr4:1915802-1915576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-270
               
               
               Cow position:chr4:16091624-16091399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:55-274
               
               
               Cow position:chr4:43370074-43369839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:55-276
               
               
               Cow position:chr4:19561470-19561689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:55-278
               
               
               Cow position:chr4:24688573-24688334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 196

               
               
               Conread position:55-279
               
               
               Cow position:chr4:58261378-58261138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-280
               
               
               Cow position:chr4:27687699-27687940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-281
               
               
               Cow position:chr4:19438234-19438479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-286
               
               
               Cow position:chr4:61972699-61972445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 194

               
               
               Conread position:55-286
               
               
               Cow position:chr4:63119455-63119221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:55-287
               
               
               Cow position:chr4:59106035-59105806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 119

               
               
               Conread position:55-288
               
               
               Cow position:chr4:53763342-53763104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-319
               
               
               Cow position:chr4:63349695-63349423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:55-330
               
               
               Cow position:chr4:26307724-26307416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:55-337
               
               
               Cow position:chr4:13406482-13406788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 122

               
               
               Conread position:55-338
               
               
               Cow position:chr4:16799417-16799105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:55-345
               
               
               Cow position:chr4:30974112-30974421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:55-346
               
               
               Cow position:chr4:25984004-25984309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:55-346
               
               
               Cow position:chr4:45644536-45644229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-347
               
               
               Cow position:chr4:23494707-23495010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-349
               
               
               Cow position:chr4:9795595-9795293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 58

               
               
               Conread position:55-350
               
               
               Cow position:chr4:19238015-19238309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 181

               
               
               Conread position:55-350
               
               
               Cow position:chr4:19584480-19584795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):44, 202

               
               
               Conread position:55-350
               
               
               Cow position:chr4:22724899-22725183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):126, 18

               
               
               Conread position:55-350
               
               
               Cow position:chr4:26400732-26401047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 186

               
               
               Conread position:55-350
               
               
               Cow position:chr4:29805587-29805281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:55-350
               
               
               Cow position:chr4:45367509-45367831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):46, 317

               
               
               Conread position:55-364
               
               
               Cow position:chr4:25889057-25888726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 189

               
               
               Conread position:56-165
               
               
               Cow position:chr4:14131292-14131402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-169
               
               
               Cow position:chr4:46385801-46385679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-174
               
               
               Cow position:chr4:40576140-40576021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-179
               
               
               Cow position:chr4:45724394-45724516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:56-184
               
               
               Cow position:chr4:30574233-30574359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:56-193
               
               
               Cow position:chr4:21064227-21064088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:56-194
               
               
               Cow position:chr4:7249792-7249649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:56-201
               
               
               Cow position:chr4:2536609-2536757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-208
               
               
               Cow position:chr4:41292203-41292040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-216
               
               
               Cow position:chr4:42232441-42232608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:56-216
               
               
               Cow position:chr4:53447889-53447718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-224
               
               
               Cow position:chr4:620377-620201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-225
               
               
               Cow position:chr4:54667914-54667729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr4:11090910-11090739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-226
               
               
               Cow position:chr4:43542956-43542776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:56-226
               
               
               Cow position:chr4:57555743-57555931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-234
               
               
               Cow position:chr4:34171792-34171602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:56-266
               
               
               Cow position:chr4:41908015-41907802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-267
               
               
               Cow position:chr4:11099892-11099667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-270
               
               
               Cow position:chr4:53832822-53833049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:56-272
               
               
               Cow position:chr4:26746261-26746488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-273
               
               
               Cow position:chr4:56409958-56410184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 138

               
               
               Conread position:56-274
               
               
               Cow position:chr4:46274970-46275185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-274
               
               
               Cow position:chr4:46370587-46370832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr4:23060226-23059987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 181

               
               
               Conread position:56-276
               
               
               Cow position:chr4:27511048-27511274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-276
               
               
               Cow position:chr4:43495678-43495906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-276
               
               
               Cow position:chr4:48137686-48137921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr4:53999730-53999501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-276
               
               
               Cow position:chr4:56233464-56233691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-277
               
               
               Cow position:chr4:19463267-19463506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:56-277
               
               
               Cow position:chr4:19542573-19542805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:56-277
               
               
               Cow position:chr4:65891768-65892002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 180

               
               
               Conread position:56-279
               
               
               Cow position:chr4:13043047-13043275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:56-279
               
               
               Cow position:chr4:17474212-17474451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:56-279
               
               
               Cow position:chr4:33623495-33623725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 151

               
               
               Conread position:56-279
               
               
               Cow position:chr4:65538631-65538405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):128, 46

               
               
               Conread position:56-280
               
               
               Cow position:chr4:3388321-3388557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 188

               
               
               Conread position:56-280
               
               
               Cow position:chr4:14470794-14470556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:56-280
               
               
               Cow position:chr4:20299047-20299288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-280
               
               
               Cow position:chr4:22849933-22849703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):67, 41

               
               
               Conread position:56-280
               
               
               Cow position:chr4:24458321-24458090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:56-280
               
               
               Cow position:chr4:33357708-33357949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-280
               
               
               Cow position:chr4:46501131-46501357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:56-284
               
               
               Cow position:chr4:52632193-52631947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-285
               
               
               Cow position:chr4:10703908-10703670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:56-286
               
               
               Cow position:chr4:4321229-4320984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-286
               
               
               Cow position:chr4:5629976-5629738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:56-286
               
               
               Cow position:chr4:11021873-11021633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 59

               
               
               Conread position:56-286
               
               
               Cow position:chr4:24119132-24118889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):45, 240

               
               
               Conread position:56-286
               
               
               Cow position:chr4:37620111-37619870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-286
               
               
               Cow position:chr4:44496161-44496391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-286
               
               
               Cow position:chr4:46060723-46060960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 172

               
               
               Conread position:56-287
               
               
               Cow position:chr4:2893801-2894051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-287
               
               
               Cow position:chr4:9137051-9137299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 215

               
               
               Conread position:56-287
               
               
               Cow position:chr4:11201594-11201840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-287
               
               
               Cow position:chr4:28173023-28172786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:56-287
               
               
               Cow position:chr4:51630434-51630662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-288
               
               
               Cow position:chr4:123424-123188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 136

               
               
               Conread position:56-288
               
               
               Cow position:chr4:11671229-11671473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:56-288
               
               
               Cow position:chr4:14919776-14920014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):103, 62

               
               
               Conread position:56-288
               
               
               Cow position:chr4:15623617-15623871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:56-288
               
               
               Cow position:chr4:22236697-22236459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-288
               
               
               Cow position:chr4:49629274-49629499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):129, 38

               
               
               Conread position:56-290
               
               
               Cow position:chr4:16736280-16736524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-290
               
               
               Cow position:chr4:52497798-52497575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:56-291
               
               
               Cow position:chr4:657041-656791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:56-308
               
               
               Cow position:chr4:4736815-4737054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:56-308
               
               
               Cow position:chr4:33421585-33421316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 215

               
               
               Conread position:56-309
               
               
               Cow position:chr4:64072577-64072304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-311
               
               
               Cow position:chr4:20502431-20502689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:56-314
               
               
               Cow position:chr4:4672558-4672280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-314
               
               
               Cow position:chr4:14414569-14414291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr4:19265349-19265629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 182

               
               
               Conread position:56-314
               
               
               Cow position:chr4:42672948-42673232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-314
               
               
               Cow position:chr4:44025041-44024773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:56-314
               
               
               Cow position:chr4:51866772-51867048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-319
               
               
               Cow position:chr4:46550161-46550442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-323
               
               
               Cow position:chr4:68362719-68362987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-324
               
               
               Cow position:chr4:25806676-25806966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 159

               
               
               Conread position:56-326
               
               
               Cow position:chr4:44973419-44973703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-327
               
               
               Cow position:chr4:33612586-33612289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-332
               
               
               Cow position:chr4:23853981-23854255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:56-332
               
               
               Cow position:chr4:47730639-47730933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-332
               
               
               Cow position:chr4:48235416-48235702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-336
               
               
               Cow position:chr4:14550627-14550918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-336
               
               
               Cow position:chr4:21233094-21232795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-338
               
               
               Cow position:chr4:61897762-61897454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:56-341
               
               
               Cow position:chr4:31023218-31023528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 276

               
               
               Conread position:56-342
               
               
               Cow position:chr4:961886-961566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:56-342
               
               
               Cow position:chr4:65431922-65432235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-343
               
               
               Cow position:chr4:43866074-43865771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:56-343
               
               
               Cow position:chr4:65406585-65406286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):32, 26

               
               
               Conread position:56-344
               
               
               Cow position:chr4:5797749-5798051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-344
               
               
               Cow position:chr4:8801284-8801589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:56-344
               
               
               Cow position:chr4:10016825-10016541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-344
               
               
               Cow position:chr4:13693901-13693585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-344
               
               
               Cow position:chr4:19322302-19321991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-344
               
               
               Cow position:chr4:22115383-22115690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 301

               
               
               Conread position:56-344
               
               
               Cow position:chr4:23509365-23509680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-344
               
               
               Cow position:chr4:28377873-28377580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:56-344
               
               
               Cow position:chr4:44612779-44613092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-344
               
               
               Cow position:chr4:59871270-59871562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:56-345
               
               
               Cow position:chr4:395727-396019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:56-345
               
               
               Cow position:chr4:3837056-3837363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-345
               
               
               Cow position:chr4:17112100-17111786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:56-345
               
               
               Cow position:chr4:17379041-17378749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:56-345
               
               
               Cow position:chr4:20139743-20139429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 276

               
               
               Conread position:56-345
               
               
               Cow position:chr4:41602625-41602937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-345
               
               
               Cow position:chr4:65841985-65841679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:56-346
               
               
               Cow position:chr4:12676589-12676888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:56-346
               
               
               Cow position:chr4:22860929-22860622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-346
               
               
               Cow position:chr4:34337493-34337183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-346
               
               
               Cow position:chr4:41301214-41300909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-346
               
               
               Cow position:chr4:46488059-46487752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-346
               
               
               Cow position:chr4:56570581-56570895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-347
               
               
               Cow position:chr4:18439796-18439480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 231

               
               
               Conread position:56-347
               
               
               Cow position:chr4:19097068-19097377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-347
               
               
               Cow position:chr4:21257352-21257034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-347
               
               
               Cow position:chr4:33395913-33395608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-347
               
               
               Cow position:chr4:36755527-36755829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-347
               
               
               Cow position:chr4:40823338-40823023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:56-347
               
               
               Cow position:chr4:42922069-42921770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-347
               
               
               Cow position:chr4:45235083-45234783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:56-347
               
               
               Cow position:chr4:45662723-45662423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):128, 37

               
               
               Conread position:56-347
               
               
               Cow position:chr4:59785094-59785412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 164

               
               
               Conread position:56-348
               
               
               Cow position:chr4:59008593-59008264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 225

               
               
               Conread position:56-349
               
               
               Cow position:chr4:3850329-3850643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-349
               
               
               Cow position:chr4:21258993-21259303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 229

               
               
               Conread position:56-349
               
               
               Cow position:chr4:22528611-22528297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:56-349
               
               
               Cow position:chr4:37342894-37343213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-350
               
               
               Cow position:chr4:509121-508816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:56-350
               
               
               Cow position:chr4:2141522-2141828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr4:3268558-3268272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):57, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr4:3283672-3283354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:56-350
               
               
               Cow position:chr4:4084669-4084357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:56-350
               
               
               Cow position:chr4:5999417-5999103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr4:10055988-10056297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-350
               
               
               Cow position:chr4:10731995-10732316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 193

               
               
               Conread position:56-350
               
               
               Cow position:chr4:11897522-11897214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 242

               
               
               Conread position:56-350
               
               
               Cow position:chr4:12560813-12561133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-350
               
               
               Cow position:chr4:13222399-13222094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr4:13255870-13256169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr4:13327181-13326863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):40, 209

               
               
               Conread position:56-350
               
               
               Cow position:chr4:15871946-15871641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:56-350
               
               
               Cow position:chr4:19316223-19315915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:56-350
               
               
               Cow position:chr4:19435037-19435348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:56-350
               
               
               Cow position:chr4:19541903-19542225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr4:20157635-20157325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr4:20327938-20327616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-350
               
               
               Cow position:chr4:21531864-21531551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr4:21874607-21874895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:56-350
               
               
               Cow position:chr4:22138459-22138129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 325

               
               
               Conread position:56-350
               
               
               Cow position:chr4:23451319-23451001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:56-350
               
               
               Cow position:chr4:27755524-27755211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr4:29291299-29291607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:56-350
               
               
               Cow position:chr4:32260070-32259750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:56-350
               
               
               Cow position:chr4:32725999-32726317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr4:34310678-34310367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:56-350
               
               
               Cow position:chr4:34383560-34383250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr4:34630678-34630991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-350
               
               
               Cow position:chr4:35981766-35982091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr4:36730967-36731283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr4:36893130-36893452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr4:37935504-37935192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:56-350
               
               
               Cow position:chr4:41867221-41867528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr4:42424025-42423712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr4:44782151-44782467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr4:45583351-45583030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:56-350
               
               
               Cow position:chr4:45775565-45775245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr4:46456272-46455977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-350
               
               
               Cow position:chr4:46591436-46591759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-350
               
               
               Cow position:chr4:46597159-46597460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr4:47348609-47348919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-350
               
               
               Cow position:chr4:49089571-49089879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:56-350
               
               
               Cow position:chr4:49159006-49158703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr4:49794456-49794752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr4:51783958-51784272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr4:54937663-54937987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:56-350
               
               
               Cow position:chr4:55395545-55395854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr4:56590807-56591129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-350
               
               
               Cow position:chr4:58248184-58248494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:56-350
               
               
               Cow position:chr4:59056063-59055769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):172, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr4:60897496-60897190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr4:62772157-62771827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr4:62983777-62983469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr4:65650348-65650041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:56-350
               
               
               Cow position:chr4:65919394-65919701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr4:66547976-66547675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:56-351
               
               
               Cow position:chr4:1495623-1495316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:56-351
               
               
               Cow position:chr4:2602007-2602324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 306

               
               
               Conread position:56-351
               
               
               Cow position:chr4:3990848-3990548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:56-351
               
               
               Cow position:chr4:10905682-10905377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:56-351
               
               
               Cow position:chr4:37704042-37704359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:56-351
               
               
               Cow position:chr4:52748681-52748363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-351
               
               
               Cow position:chr4:54455567-54455249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-351
               
               
               Cow position:chr4:63459439-63459130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-352
               
               
               Cow position:chr4:37915553-37915241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:56-352
               
               
               Cow position:chr4:38999203-38999517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-353
               
               
               Cow position:chr4:43148180-43148506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):40, 316

               
               
               Conread position:56-353
               
               
               Cow position:chr4:46477162-46476850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-354
               
               
               Cow position:chr4:12004000-12004310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-355
               
               
               Cow position:chr4:23599947-23600265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-355
               
               
               Cow position:chr4:33910081-33910366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-355
               
               
               Cow position:chr4:33971119-33970799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-358
               
               
               Cow position:chr4:31004628-31004308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:56-361
               
               
               Cow position:chr4:53125914-53126215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:56-364
               
               
               Cow position:chr4:4185898-4186226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 35

               
               
               Conread position:56-364
               
               
               Cow position:chr4:10472000-10472300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-364
               
               
               Cow position:chr4:33433482-33433149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:56-364
               
               
               Cow position:chr4:41186130-41185811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:56-366
               
               
               Cow position:chr4:3687705-3688037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-366
               
               
               Cow position:chr4:56240068-56239751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):45, 66

               
               
               Conread position:56-367
               
               
               Cow position:chr4:5610298-5609986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-367
               
               
               Cow position:chr4:11187236-11187560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-369
               
               
               Cow position:chr4:55270984-55270658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:57-276
               
               
               Cow position:chr4:16637821-16637595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:57-277
               
               
               Cow position:chr4:54975086-54975306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:57-280
               
               
               Cow position:chr4:480229-479995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:57-283
               
               
               Cow position:chr4:34924915-34924673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-286
               
               
               Cow position:chr4:18255641-18255870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):141, 39

               
               
               Conread position:57-286
               
               
               Cow position:chr4:21371172-21371409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:57-286
               
               
               Cow position:chr4:53209013-53209255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):42, 186

               
               
               Conread position:57-286
               
               
               Cow position:chr4:54930638-54930401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:57-287
               
               
               Cow position:chr4:47289848-47290098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-293
               
               
               Cow position:chr4:38799417-38799174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):42, 155

               
               
               Conread position:57-318
               
               
               Cow position:chr4:27540399-27540680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-330
               
               
               Cow position:chr4:39231745-39231451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:57-332
               
               
               Cow position:chr4:51739925-51739642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:57-342
               
               
               Cow position:chr4:41441343-41441650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-350
               
               
               Cow position:chr4:570577-570884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 62

               
               
               Conread position:57-350
               
               
               Cow position:chr4:5461082-5460768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 49

               
               
               Conread position:57-350
               
               
               Cow position:chr4:10412156-10412464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-350
               
               
               Cow position:chr4:12591433-12591122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):39, 186

               
               
               Conread position:57-350
               
               
               Cow position:chr4:12903596-12903914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:57-350
               
               
               Cow position:chr4:13142754-13142474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):225, 37

               
               
               Conread position:57-350
               
               
               Cow position:chr4:13589866-13590176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):26, 170

               
               
               Conread position:57-350
               
               
               Cow position:chr4:23647065-23646769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 173

               
               
               Conread position:57-350
               
               
               Cow position:chr4:25197720-25197403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 166

               
               
               Conread position:57-350
               
               
               Cow position:chr4:54190872-54191182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:57-351
               
               
               Cow position:chr4:23847273-23846957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-351
               
               
               Cow position:chr4:28836304-28836627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 303

               
               
               Conread position:57-366
               
               
               Cow position:chr4:12127865-12127530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):42, 198

               
               
               Conread position:58-246
               
               
               Cow position:chr4:49992866-49993052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:58-286
               
               
               Cow position:chr4:35940233-35939989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 189

               
               
               Conread position:58-294
               
               
               Cow position:chr4:43750033-43749786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:58-337
               
               
               Cow position:chr4:22345236-22344942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:58-343
               
               
               Cow position:chr4:21064817-21065121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:58-344
               
               
               Cow position:chr4:33030337-33030635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:58-346
               
               
               Cow position:chr4:7430097-7430409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:58-350
               
               
               Cow position:chr4:15904877-15905194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:58-350
               
               
               Cow position:chr4:19582836-19582525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:58-350
               
               
               Cow position:chr4:25369895-25370197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 51

               
               
               Conread position:58-350
               
               
               Cow position:chr4:38952337-38952646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:58-350
               
               
               Cow position:chr4:39128310-39128630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-351
               
               
               Cow position:chr4:9248-8939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 156

               
               
               Conread position:58-353
               
               
               Cow position:chr4:18974211-18974518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:59-259
               
               
               Cow position:chr4:1237337-1237122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:59-307
               
               
               Cow position:chr4:285434-285691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:59-338
               
               
               Cow position:chr4:34166195-34165894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:59-347
               
               
               Cow position:chr4:21365185-21365491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 239

               
               
               Conread position:59-350
               
               
               Cow position:chr4:25879175-25879482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 185

               
               
               Conread position:59-350
               
               
               Cow position:chr4:27276761-27276452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:59-350
               
               
               Cow position:chr4:37691528-37691220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:59-353
               
               
               Cow position:chr4:59277700-59277384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:60-280
               
               
               Cow position:chr4:11901782-11901548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):39, 163

               
               
               Conread position:60-350
               
               
               Cow position:chr4:68764298-68764608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:60-352
               
               
               Cow position:chr4:19744664-19744970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:61-346
               
               
               Cow position:chr4:40414849-40414539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 30

               
               
               Conread position:61-350
               
               
               Cow position:chr4:65815910-65815615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):117, 56

               
               
               Conread position:62-349
               
               
               Cow position:chr4:39767128-39767439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 293

               
               
               Conread position:62-350
               
               
               Cow position:chr4:38935141-38935451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:63-280
               
               
               Cow position:chr4:30690508-30690728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:63-291
               
               
               Cow position:chr4:11331873-11332116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:64-291
               
               
               Cow position:chr4:25359393-25359621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 156

               
               
               Conread position:64-311
               
               
               Cow position:chr4:29237368-29237117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:64-350
               
               
               Cow position:chr4:19313789-19314105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:64-350
               
               
               Cow position:chr4:45589806-45589508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:65-288
               
               
               Cow position:chr4:1034843-1035071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:65-288
               
               
               Cow position:chr4:5623411-5623180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 139

               
               
               Conread position:66-286
               
               
               Cow position:chr4:28543816-28543594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):7, 152

               
               
               Conread position:66-350
               
               
               Cow position:chr4:31506243-31505932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:70-280
               
               
               Cow position:chr4:13832809-13832596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 78

               
               
               Conread position:70-346
               
               
               Cow position:chr4:36929104-36929398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:70-350
               
               
               Cow position:chr4:23526488-23526785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:70-350
               
               
               Cow position:chr4:48321819-48322128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:71-353
               
               
               Cow position:chr4:31859053-31859359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 296

               
               
               Conread position:72-286
               
               
               Cow position:chr4:1354821-1354607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:72-346
               
               
               Cow position:chr4:9681094-9681395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:72-355
               
               
               Cow position:chr4:1026436-1026139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:73-366
               
               
               Cow position:chr4:51768906-51769214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 161

               
               
               Conread position:74-350
               
               
               Cow position:chr4:16593878-16594175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:74-350
               
               
               Cow position:chr4:29384424-29384142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:75-350
               
               
               Cow position:chr4:20712-21005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 207

               
               
               Conread position:76-350
               
               
               Cow position:chr4:13974175-13973877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:80-280
               
               
               Cow position:chr4:33869464-33869668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:80-346
               
               
               Cow position:chr4:19408199-19407909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:80-350
               
               
               Cow position:chr4:54111544-54111834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:81-258
               
               
               Cow position:chr4:19558517-19558713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:81-346
               
               
               Cow position:chr4:21392011-21391723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:81-350
               
               
               Cow position:chr4:27344869-27344586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 73

               
               
               Conread position:82-350
               
               
               Cow position:chr4:17774547-17774257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:85-251
               
               
               Cow position:chr4:29813735-29813560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 146

               
               
               Conread position:91-288
               
               
               Cow position:chr4:52823592-52823392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):13, 145

               
               
               Conread position:91-350
               
               
               Cow position:chr4:45077256-45076985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:91-367
               
               
               Cow position:chr4:22907336-22907613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 58

               
               
               Conread position:97-336
               
               
               Cow position:chr4:41371117-41370862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:98-350
               
               
               Cow position:chr4:7704496-7704232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:100-277
               
               
               Cow position:chr4:45483263-45483454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:100-342
               
               
               Cow position:chr4:22741590-22741331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:100-344
               
               
               Cow position:chr4:13344368-13344625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:100-350
               
               
               Cow position:chr4:17186531-17186258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:100-350
               
               
               Cow position:chr4:34022765-34022492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:100-350
               
               
               Cow position:chr4:51727898-51728172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:100-350
               
               
               Cow position:chr4:65175317-65175053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:100-351
               
               
               Cow position:chr4:22713669-22713401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 146

               
               
               Conread position:100-351
               
               
               Cow position:chr4:33097154-33096887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:100-367
               
               
               Cow position:chr4:32459040-32458748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:101-351
               
               
               Cow position:chr4:68076704-68076445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 128

               
               
               Conread position:103-260
               
               
               Cow position:chr4:61088393-61088554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 124

               
               
               Conread position:103-280
               
               
               Cow position:chr4:7501696-7501882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:103-344
               
               
               Cow position:chr4:20147010-20147270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:104-350
               
               
               Cow position:chr4:45685295-45685549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:105-350
               
               
               Cow position:chr4:16881536-16881268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:106-337
               
               
               Cow position:chr4:27632281-27632523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:106-350
               
               
               Cow position:chr4:69543006-69543275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:109-355
               
               
               Cow position:chr4:34369622-34369352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:113-359
               
               
               Cow position:chr4:19501249-19500990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:119-350
               
               
               Cow position:chr4:61313364-61313120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:119-350
               
               
               Cow position:chr4:65950492-65950747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):32, 128

               
               
               Conread position:120-338
               
               
               Cow position:chr4:53346171-53346408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:123-351
               
               
               Cow position:chr4:59377762-59378003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:126-350
               
               
               Cow position:chr4:54524479-54524252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:128-288
               
               
               Cow position:chr4:36577777-36577612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:128-345
               
               
               Cow position:chr4:52087788-52088013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:128-350
               
               
               Cow position:chr4:20027248-20027011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):57, 225

               
               
               Conread position:130-347
               
               
               Cow position:chr4:18756288-18756524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:130-350
               
               
               Cow position:chr4:37313025-37313258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:134-348
               
               
               Cow position:chr4:48172998-48173227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 6

               
               
               Conread position:137-346
               
               
               Cow position:chr4:22196329-22196126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):141, 14

               
               
               Conread position:149-350
               
               
               Cow position:chr4:65463612-65463416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):141, 50

               
               
               Conread position:149-366
               
               
               Cow position:chr4:55508367-55508138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:157-361
               
               
               Cow position:chr4:11380165-11380384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:174-350
               
               
               Cow position:chr4:19323882-19324067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:174-350
               
               
               Cow position:chr4:50676258-50676080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:177-350
               
               
               Cow position:chr4:61066686-61066858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:180-345
               
               
               Cow position:chr4:5964074-5963901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 41

               
               
               Conread position:186-336
               
               
               Cow position:chr4:11610796-11610949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:186-344
               
               
               Cow position:chr4:64657376-64657211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr4:19098385-19098565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr4:19102965-19102789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:186-350
               
               
               Cow position:chr4:37675535-37675705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:186-350
               
               
               Cow position:chr4:44773126-44772951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 163

               
               
               Conread position:186-350
               
               
               Cow position:chr4:45073984-45074152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:186-350
               
               
               Cow position:chr4:66136685-66136515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:186-352
               
               
               Cow position:chr4:45563662-45563841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:188-347
               
               
               Cow position:chr4:45705967-45706129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:188-350
               
               
               Cow position:chr4:47510312-47510477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:190-350
               
               
               Cow position:chr4:20142984-20142819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:190-350
               
               
               Cow position:chr4:54921164-54920998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:194-350
               
               
               Cow position:chr4:4277742-4277582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:196-350
               
               
               Cow position:chr4:26830632-26830799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:199-351
               
               
               Cow position:chr4:49800626-49800785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:201-350
               
               
               Cow position:chr4:26012331-26012493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:211-350
               
               
               Cow position:chr4:41292007-41291861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:233-350
               
               
               Cow position:chr4:28753597-28753715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 49

               
               
               Conread position:45-350
               
               
               Cow position:chr5:22643417-22643106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:49-277
               
               
               Cow position:chr5:27690255-27690015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:49-280
               
               
               Cow position:chr5:37714101-37713848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:49-282
               
               
               Cow position:chr5:62579859-62579620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:49-350
               
               
               Cow position:chr5:4220783-4221104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 109

               
               
               Conread position:51-196
               
               
               Cow position:chr5:1678205-1678350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 7

               
               
               Conread position:51-350
               
               
               Cow position:chr5:7723475-7723791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):48, 184

               
               
               Conread position:52-291
               
               
               Cow position:chr5:1766537-1766292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:55-165
               
               
               Cow position:chr5:56137235-56137120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr5:3281063-3280932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-185
               
               
               Cow position:chr5:61455563-61455701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-274
               
               
               Cow position:chr5:63840337-63840108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:55-276
               
               
               Cow position:chr5:65924890-65924647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:55-280
               
               
               Cow position:chr5:26790643-26790409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):45, 63

               
               
               Conread position:55-290
               
               
               Cow position:chr5:40039962-40039714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-290
               
               
               Cow position:chr5:54064588-54064832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):55, 59

               
               
               Conread position:55-314
               
               
               Cow position:chr5:39094362-39094639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 188

               
               
               Conread position:55-332
               
               
               Cow position:chr5:41636681-41636975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 49

               
               
               Conread position:55-340
               
               
               Cow position:chr5:31480963-31481264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 38

               
               
               Conread position:55-340
               
               
               Cow position:chr5:43738143-43737847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:55-342
               
               
               Cow position:chr5:4617182-4617485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:55-344
               
               
               Cow position:chr5:44848208-44847901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):118, 45

               
               
               Conread position:55-344
               
               
               Cow position:chr5:56518401-56518102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:55-345
               
               
               Cow position:chr5:47601625-47601933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:55-347
               
               
               Cow position:chr5:27419912-27419606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:55-350
               
               
               Cow position:chr5:20783433-20783748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:55-350
               
               
               Cow position:chr5:34463777-34463455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 302

               
               
               Conread position:55-350
               
               
               Cow position:chr5:36868554-36868860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:55-350
               
               
               Cow position:chr5:52000027-52000344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:55-350
               
               
               Cow position:chr5:52165374-52165053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 197

               
               
               Conread position:55-350
               
               
               Cow position:chr5:58144795-58144492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 188

               
               
               Conread position:55-350
               
               
               Cow position:chr5:72007044-72006739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:55-352
               
               
               Cow position:chr5:37941984-37941680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 191

               
               
               Conread position:55-363
               
               
               Cow position:chr5:30844919-30845249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:56-156
               
               
               Cow position:chr5:26541103-26541206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr5:46323002-46322872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:56-182
               
               
               Cow position:chr5:24642912-24642787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:56-182
               
               
               Cow position:chr5:49558977-49559108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-182
               
               
               Cow position:chr5:50870351-50870485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr5:63917601-63917471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-182
               
               
               Cow position:chr5:66280982-66280852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-189
               
               
               Cow position:chr5:63388604-63388740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-191
               
               
               Cow position:chr5:59298149-59298009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 124

               
               
               Conread position:56-191
               
               
               Cow position:chr5:70101999-70101857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-197
               
               
               Cow position:chr5:37366707-37366857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-213
               
               
               Cow position:chr5:34506116-34505949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-214
               
               
               Cow position:chr5:2851123-2851290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 121

               
               
               Conread position:56-214
               
               
               Cow position:chr5:20554940-20554766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-220
               
               
               Cow position:chr5:35449063-35449234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-220
               
               
               Cow position:chr5:72310524-72310692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-222
               
               
               Cow position:chr5:64844308-64844139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:56-223
               
               
               Cow position:chr5:45705857-45706036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-225
               
               
               Cow position:chr5:14415582-14415765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 35

               
               
               Conread position:56-225
               
               
               Cow position:chr5:57271455-57271273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:56-229
               
               
               Cow position:chr5:32963820-32963635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-232
               
               
               Cow position:chr5:24837136-24836960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-233
               
               
               Cow position:chr5:31434075-31434261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-259
               
               
               Cow position:chr5:9859909-9859686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-259
               
               
               Cow position:chr5:72150061-72150275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-266
               
               
               Cow position:chr5:49820952-49821172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:56-267
               
               
               Cow position:chr5:6130162-6130387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-270
               
               
               Cow position:chr5:45036831-45037050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:56-273
               
               
               Cow position:chr5:8994756-8994526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-276
               
               
               Cow position:chr5:30639043-30638821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):129, 71

               
               
               Conread position:56-276
               
               
               Cow position:chr5:43395328-43395107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-276
               
               
               Cow position:chr5:51490944-51490722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:56-277
               
               
               Cow position:chr5:16184899-16185131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-277
               
               
               Cow position:chr5:19470377-19470148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-278
               
               
               Cow position:chr5:42667579-42667343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:56-279
               
               
               Cow position:chr5:53842098-53842326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:56-279
               
               
               Cow position:chr5:59759195-59759424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 123

               
               
               Conread position:56-280
               
               
               Cow position:chr5:28247986-28248219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 169

               
               
               Conread position:56-281
               
               
               Cow position:chr5:7140295-7140059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:56-281
               
               
               Cow position:chr5:59443442-59443203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-282
               
               
               Cow position:chr5:47888905-47888663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-285
               
               
               Cow position:chr5:14420535-14420288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 226

               
               
               Conread position:56-285
               
               
               Cow position:chr5:35235899-35235659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):43, 121

               
               
               Conread position:56-286
               
               
               Cow position:chr5:1027882-1027643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:56-286
               
               
               Cow position:chr5:18090537-18090789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:56-286
               
               
               Cow position:chr5:30487054-30487293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:56-286
               
               
               Cow position:chr5:31918464-31918694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):38, 52

               
               
               Conread position:56-286
               
               
               Cow position:chr5:34887389-34887144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 190

               
               
               Conread position:56-286
               
               
               Cow position:chr5:41951275-41951045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:56-286
               
               
               Cow position:chr5:66815766-66815520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:56-287
               
               
               Cow position:chr5:59119-58879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-287
               
               
               Cow position:chr5:32153506-32153266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-287
               
               
               Cow position:chr5:45409135-45409376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 190

               
               
               Conread position:56-288
               
               
               Cow position:chr5:9090214-9089969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-288
               
               
               Cow position:chr5:20127864-20128106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:56-288
               
               
               Cow position:chr5:24485616-24485379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:56-288
               
               
               Cow position:chr5:27102978-27102740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-288
               
               
               Cow position:chr5:32140897-32140654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:56-288
               
               
               Cow position:chr5:34115472-34115706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:56-288
               
               
               Cow position:chr5:37645883-37646129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:56-288
               
               
               Cow position:chr5:41522986-41522749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 224

               
               
               Conread position:56-288
               
               
               Cow position:chr5:56433608-56433859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-291
               
               
               Cow position:chr5:16508905-16509158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:56-291
               
               
               Cow position:chr5:17063284-17063029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):54, 102

               
               
               Conread position:56-291
               
               
               Cow position:chr5:34885346-34885108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 190

               
               
               Conread position:56-291
               
               
               Cow position:chr5:53855513-53855758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-305
               
               
               Cow position:chr5:44583309-44583065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):125, 43

               
               
               Conread position:56-314
               
               
               Cow position:chr5:2500379-2500104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 248

               
               
               Conread position:56-314
               
               
               Cow position:chr5:23140763-23140500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:56-314
               
               
               Cow position:chr5:26370508-26370772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-314
               
               
               Cow position:chr5:29212758-29213027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):40, 49

               
               
               Conread position:56-314
               
               
               Cow position:chr5:34528371-34528636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:56-314
               
               
               Cow position:chr5:40388056-40387791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):127, 41

               
               
               Conread position:56-314
               
               
               Cow position:chr5:65601270-65601546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:56-326
               
               
               Cow position:chr5:62870227-62869940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 261

               
               
               Conread position:56-335
               
               
               Cow position:chr5:17869516-17869799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-337
               
               
               Cow position:chr5:35763100-35763375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):120, 38

               
               
               Conread position:56-338
               
               
               Cow position:chr5:39447721-39447421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-339
               
               
               Cow position:chr5:66366340-66366624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):184, 37

               
               
               Conread position:56-342
               
               
               Cow position:chr5:52645266-52644962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-343
               
               
               Cow position:chr5:15478923-15479244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 312

               
               
               Conread position:56-343
               
               
               Cow position:chr5:32697003-32696704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 39

               
               
               Conread position:56-343
               
               
               Cow position:chr5:40357060-40356739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:56-343
               
               
               Cow position:chr5:50637639-50637940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-344
               
               
               Cow position:chr5:28302930-28302623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):42, 119

               
               
               Conread position:56-344
               
               
               Cow position:chr5:53835524-53835836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-344
               
               
               Cow position:chr5:54311143-54311456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-344
               
               
               Cow position:chr5:67212188-67212481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-345
               
               
               Cow position:chr5:3492011-3492295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:56-345
               
               
               Cow position:chr5:9894316-9894002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:56-345
               
               
               Cow position:chr5:18898793-18899094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-345
               
               
               Cow position:chr5:41164898-41165209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:56-346
               
               
               Cow position:chr5:6045097-6045418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-346
               
               
               Cow position:chr5:14314331-14314650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-346
               
               
               Cow position:chr5:37377685-37377975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:56-346
               
               
               Cow position:chr5:41546084-41545771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):28, 171

               
               
               Conread position:56-346
               
               
               Cow position:chr5:49685471-49685153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-346
               
               
               Cow position:chr5:55068527-55068828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:56-346
               
               
               Cow position:chr5:56467510-56467812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 60

               
               
               Conread position:56-347
               
               
               Cow position:chr5:21617265-21617581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-347
               
               
               Cow position:chr5:29827863-29828169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-347
               
               
               Cow position:chr5:33537700-33537997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr5:64176311-64176003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-348
               
               
               Cow position:chr5:41129575-41129866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-349
               
               
               Cow position:chr5:24348921-24349231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-350
               
               
               Cow position:chr5:1247086-1247388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chr5:4218687-4218983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-350
               
               
               Cow position:chr5:4280273-4280573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr5:4710333-4710026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:56-350
               
               
               Cow position:chr5:5257487-5257162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr5:11668369-11668059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr5:12322991-12322681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr5:12709695-12709992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 240

               
               
               Conread position:56-350
               
               
               Cow position:chr5:15426335-15426664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr5:15598424-15598112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr5:15722245-15721948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 54

               
               
               Conread position:56-350
               
               
               Cow position:chr5:16025651-16025342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr5:18573980-18574298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:56-350
               
               
               Cow position:chr5:20779572-20779272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr5:21828674-21828993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr5:22242976-22242639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr5:23169009-23168700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr5:26046143-26046447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 149

               
               
               Conread position:56-350
               
               
               Cow position:chr5:26094360-26094041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):40, 313

               
               
               Conread position:56-350
               
               
               Cow position:chr5:26097105-26097414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-350
               
               
               Cow position:chr5:26262864-26262553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-350
               
               
               Cow position:chr5:26990203-26990514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr5:27306128-27306430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr5:28927783-28927468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr5:29353320-29353001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr5:29771324-29771654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr5:32956282-32955970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:56-350
               
               
               Cow position:chr5:32975742-32975435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 174

               
               
               Conread position:56-350
               
               
               Cow position:chr5:34300736-34301042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr5:35145162-35145454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr5:35208071-35208386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr5:35969352-35969658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr5:37646741-37646418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:56-350
               
               
               Cow position:chr5:38832929-38833247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr5:40109311-40109618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:56-350
               
               
               Cow position:chr5:41981211-41981493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:56-350
               
               
               Cow position:chr5:42064012-42064330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):94, 313

               
               
               Conread position:56-350
               
               
               Cow position:chr5:42845791-42845466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr5:43923340-43923036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 136

               
               
               Conread position:56-350
               
               
               Cow position:chr5:43929924-43929610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-350
               
               
               Cow position:chr5:43992135-43992450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-350
               
               
               Cow position:chr5:44752501-44752181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr5:44796909-44796607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-350
               
               
               Cow position:chr5:45803870-45804185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr5:45845886-45845562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr5:46510057-46509740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 314

               
               
               Conread position:56-350
               
               
               Cow position:chr5:47317160-47316849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr5:50533573-50533262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr5:50722860-50723171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-350
               
               
               Cow position:chr5:50821598-50821909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:56-350
               
               
               Cow position:chr5:50943344-50943031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr5:54086345-54086663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr5:54350551-54350236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr5:55176696-55177012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr5:55756630-55756290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 334

               
               
               Conread position:56-350
               
               
               Cow position:chr5:56523983-56524300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:56-350
               
               
               Cow position:chr5:57935304-57934982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr5:58855913-58856228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr5:60715545-60715242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:56-350
               
               
               Cow position:chr5:61725779-61726090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr5:62172228-62172538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr5:63987638-63987320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:56-350
               
               
               Cow position:chr5:64139372-64139686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr5:64758954-64758641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr5:65588517-65588826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr5:65933118-65932817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:56-350
               
               
               Cow position:chr5:67243735-67244044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr5:67932652-67932346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr5:69461144-69461461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr5:72564571-72564890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-351
               
               
               Cow position:chr5:44994228-44993921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-351
               
               
               Cow position:chr5:65941444-65941123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-351
               
               
               Cow position:chr5:74858383-74858701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-352
               
               
               Cow position:chr5:5111267-5110941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:56-352
               
               
               Cow position:chr5:42777574-42777876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-353
               
               
               Cow position:chr5:44054228-44053926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:56-354
               
               
               Cow position:chr5:33661664-33661975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 195

               
               
               Conread position:56-355
               
               
               Cow position:chr5:4032179-4031855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:56-356
               
               
               Cow position:chr5:31640237-31640557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:56-361
               
               
               Cow position:chr5:58793805-58793468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-364
               
               
               Cow position:chr5:16938198-16937887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):70, 132

               
               
               Conread position:56-364
               
               
               Cow position:chr5:21040164-21039842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):74, 55

               
               
               Conread position:56-364
               
               
               Cow position:chr5:57736924-57737241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-366
               
               
               Cow position:chr5:5201726-5202042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:56-366
               
               
               Cow position:chr5:36855022-36855347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:56-366
               
               
               Cow position:chr5:45226014-45225675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:56-367
               
               
               Cow position:chr5:2309754-2309413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 320

               
               
               Conread position:56-367
               
               
               Cow position:chr5:17999685-17999351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 182

               
               
               Conread position:56-367
               
               
               Cow position:chr5:51053838-51053504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-379
               
               
               Cow position:chr5:65887205-65886857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 189

               
               
               Conread position:56-399
               
               
               Cow position:chr5:14550776-14550411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:57-218
               
               
               Cow position:chr5:6575777-6575606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-240
               
               
               Cow position:chr5:55821177-55821380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 198

               
               
               Conread position:57-241
               
               
               Cow position:chr5:60519977-60520170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):126, 93

               
               
               Conread position:57-276
               
               
               Cow position:chr5:20344967-20345204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 195

               
               
               Conread position:57-286
               
               
               Cow position:chr5:56820449-56820210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:57-332
               
               
               Cow position:chr5:38853170-38853457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 197

               
               
               Conread position:57-339
               
               
               Cow position:chr5:65752667-65752975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-344
               
               
               Cow position:chr5:8024382-8024080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:57-346
               
               
               Cow position:chr5:57074524-57074209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-347
               
               
               Cow position:chr5:42744604-42744903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 29

               
               
               Conread position:57-350
               
               
               Cow position:chr5:6528491-6528810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 314

               
               
               Conread position:57-350
               
               
               Cow position:chr5:21964096-21964395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:57-350
               
               
               Cow position:chr5:39936913-39937240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 124

               
               
               Conread position:57-350
               
               
               Cow position:chr5:46104125-46103835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 75

               
               
               Conread position:57-350
               
               
               Cow position:chr5:48010036-48009733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:57-350
               
               
               Cow position:chr5:62142481-62142802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-350
               
               
               Cow position:chr5:72903417-72903111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:58-190
               
               
               Cow position:chr5:31469773-31469635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-249
               
               
               Cow position:chr5:42747968-42748173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:58-260
               
               
               Cow position:chr5:40928162-40927952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 95

               
               
               Conread position:58-287
               
               
               Cow position:chr5:5938136-5938375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):39, 172

               
               
               Conread position:58-332
               
               
               Cow position:chr5:26133262-26132989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:58-342
               
               
               Cow position:chr5:50215747-50215444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:58-351
               
               
               Cow position:chr5:14904262-14903940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-353
               
               
               Cow position:chr5:7044899-7044576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):45, 100

               
               
               Conread position:59-286
               
               
               Cow position:chr5:49362179-49361941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 184

               
               
               Conread position:59-288
               
               
               Cow position:chr5:54713924-54713677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 198

               
               
               Conread position:59-346
               
               
               Cow position:chr5:57575578-57575895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:59-347
               
               
               Cow position:chr5:32378681-32378950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:59-350
               
               
               Cow position:chr5:28224266-28224578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:59-351
               
               
               Cow position:chr5:16893963-16893644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 107

               
               
               Conread position:60-272
               
               
               Cow position:chr5:17644842-17644616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):39, 185

               
               
               Conread position:60-288
               
               
               Cow position:chr5:47547904-47547668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 198

               
               
               Conread position:60-350
               
               
               Cow position:chr5:19813400-19813094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):39, 31

               
               
               Conread position:60-350
               
               
               Cow position:chr5:29903708-29903397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:60-353
               
               
               Cow position:chr5:68718696-68718996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:60-359
               
               
               Cow position:chr5:29061111-29060800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 192

               
               
               Conread position:63-350
               
               
               Cow position:chr5:24996409-24996097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 181

               
               
               Conread position:63-350
               
               
               Cow position:chr5:37808848-37808537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:63-350
               
               
               Cow position:chr5:71494633-71494947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):21, 188

               
               
               Conread position:63-351
               
               
               Cow position:chr5:34624785-34625088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:64-287
               
               
               Cow position:chr5:48828973-48829207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:64-340
               
               
               Cow position:chr5:55928760-55929060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:64-347
               
               
               Cow position:chr5:41609117-41609407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:64-350
               
               
               Cow position:chr5:47323268-47323587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:66-350
               
               
               Cow position:chr5:39258353-39258631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:67-350
               
               
               Cow position:chr5:55232973-55232687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:69-182
               
               
               Cow position:chr5:45026095-45025978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:70-287
               
               
               Cow position:chr5:28957793-28957561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:70-356
               
               
               Cow position:chr5:51935006-51935321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 181

               
               
               Conread position:71-320
               
               
               Cow position:chr5:69520715-69520987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:72-280
               
               
               Cow position:chr5:3627330-3627106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:72-286
               
               
               Cow position:chr5:29980160-29979931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 226

               
               
               Conread position:73-346
               
               
               Cow position:chr5:41713136-41713421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:74-337
               
               
               Cow position:chr5:59115208-59115495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):25, 176

               
               
               Conread position:76-352
               
               
               Cow position:chr5:56014564-56014859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:76-364
               
               
               Cow position:chr5:55955735-55956054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:77-336
               
               
               Cow position:chr5:41010166-41009892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:78-278
               
               
               Cow position:chr5:57327624-57327836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 162

               
               
               Conread position:81-350
               
               
               Cow position:chr5:30950085-30949789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:82-286
               
               
               Cow position:chr5:51801133-51800921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 158

               
               
               Conread position:83-344
               
               
               Cow position:chr5:16214527-16214807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:86-276
               
               
               Cow position:chr5:71579013-71579218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:86-350
               
               
               Cow position:chr5:45397418-45397695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:94-350
               
               
               Cow position:chr5:54750685-54750932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:96-259
               
               
               Cow position:chr5:44849872-44849706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:96-350
               
               
               Cow position:chr5:47696588-47696324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):85, 54

               
               
               Conread position:97-280
               
               
               Cow position:chr5:60448068-60448262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:98-348
               
               
               Cow position:chr5:35459442-35459170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:98-350
               
               
               Cow position:chr5:35247258-35246985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:99-286
               
               
               Cow position:chr5:3668755-3668949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 190

               
               
               Conread position:100-278
               
               
               Cow position:chr5:43816753-43816562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 188

               
               
               Conread position:100-285
               
               
               Cow position:chr5:3004585-3004773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):25, 143

               
               
               Conread position:100-286
               
               
               Cow position:chr5:23866306-23866120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:100-347
               
               
               Cow position:chr5:39874980-39875247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:100-348
               
               
               Cow position:chr5:21920226-21920495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):26, 246

               
               
               Conread position:100-350
               
               
               Cow position:chr5:12673605-12673352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:100-350
               
               
               Cow position:chr5:66972282-66972554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):26, 267

               
               
               Conread position:101-347
               
               
               Cow position:chr5:54060133-54060399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:103-286
               
               
               Cow position:chr5:12566870-12566690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 72

               
               
               Conread position:104-350
               
               
               Cow position:chr5:44447008-44446739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:105-348
               
               
               Cow position:chr5:67540343-67540077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:105-364
               
               
               Cow position:chr5:25035382-25035116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:107-291
               
               
               Cow position:chr5:25447426-25447616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 132

               
               
               Conread position:108-347
               
               
               Cow position:chr5:23529410-23529160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:109-348
               
               
               Cow position:chr5:73168134-73167887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:113-350
               
               
               Cow position:chr5:54768042-54767783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):13, 159

               
               
               Conread position:117-348
               
               
               Cow position:chr5:49474670-49474421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:120-350
               
               
               Cow position:chr5:23678827-23678577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):10, 230

               
               
               Conread position:120-350
               
               
               Cow position:chr5:60747398-60747155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:122-277
               
               
               Cow position:chr5:16179645-16179480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 140

               
               
               Conread position:123-338
               
               
               Cow position:chr5:49440991-49440757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:123-350
               
               
               Cow position:chr5:18289010-18289247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):65, 178

               
               
               Conread position:125-350
               
               
               Cow position:chr5:33560851-33560609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 99

               
               
               Conread position:129-350
               
               
               Cow position:chr5:13717684-13717444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:130-350
               
               
               Cow position:chr5:58446691-58446933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:135-344
               
               
               Cow position:chr5:56635793-56636015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:136-350
               
               
               Cow position:chr5:41293974-41294206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:139-350
               
               
               Cow position:chr5:35785079-35784863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:151-350
               
               
               Cow position:chr5:50575693-50575909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:155-350
               
               
               Cow position:chr5:54375587-54375376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:181-350
               
               
               Cow position:chr5:55796017-55795840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:185-346
               
               
               Cow position:chr5:63234874-63234707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:185-350
               
               
               Cow position:chr5:63059021-63059187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:186-346
               
               
               Cow position:chr5:19752258-19752424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:186-346
               
               
               Cow position:chr5:22445867-22446033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:186-347
               
               
               Cow position:chr5:29515543-29515382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:186-350
               
               
               Cow position:chr5:59627021-59626846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 163

               
               
               Conread position:186-350
               
               
               Cow position:chr5:61455798-61455970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:186-367
               
               
               Cow position:chr5:45420181-45419995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:188-346
               
               
               Cow position:chr5:56517057-56517226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:188-347
               
               
               Cow position:chr5:56153569-56153738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 124

               
               
               Conread position:188-350
               
               
               Cow position:chr5:63627570-63627409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:193-353
               
               
               Cow position:chr5:68537707-68537539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:195-350
               
               
               Cow position:chr5:49501863-49501698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:200-352
               
               
               Cow position:chr5:33273657-33273821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:202-350
               
               
               Cow position:chr5:45574399-45574239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:206-352
               
               
               Cow position:chr5:61875515-61875665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:14-349
               
               
               Cow position:chr6:15447424-15447059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:43-273
               
               
               Cow position:chr6:49604494-49604729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:46-351
               
               
               Cow position:chr6:19012883-19013203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):53, 83

               
               
               Conread position:49-350
               
               
               Cow position:chr6:68049253-68049557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:51-347
               
               
               Cow position:chr6:35435824-35436131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:52-350
               
               
               Cow position:chr6:37149014-37149328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:54-344
               
               
               Cow position:chr6:9838984-9839295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 184

               
               
               Conread position:55-163
               
               
               Cow position:chr6:32024515-32024401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-193
               
               
               Cow position:chr6:50746804-50746951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:55-217
               
               
               Cow position:chr6:60017891-60018052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:55-243
               
               
               Cow position:chr6:59302002-59301804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-263
               
               
               Cow position:chr6:24515370-24515155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:55-276
               
               
               Cow position:chr6:45160469-45160242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:55-276
               
               
               Cow position:chr6:47540349-47540587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 225

               
               
               Conread position:55-277
               
               
               Cow position:chr6:37634612-37634846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:55-278
               
               
               Cow position:chr6:29239767-29239999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:55-281
               
               
               Cow position:chr6:32210804-32210578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:55-286
               
               
               Cow position:chr6:19401685-19401909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 41

               
               
               Conread position:55-286
               
               
               Cow position:chr6:25407569-25407327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 194

               
               
               Conread position:55-286
               
               
               Cow position:chr6:60239569-60239330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:55-286
               
               
               Cow position:chr6:67968791-67968545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-291
               
               
               Cow position:chr6:14696549-14696301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 176

               
               
               Conread position:55-327
               
               
               Cow position:chr6:54365502-54365211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:55-333
               
               
               Cow position:chr6:57164250-57164552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):71, 216

               
               
               Conread position:55-344
               
               
               Cow position:chr6:9026340-9026652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:55-344
               
               
               Cow position:chr6:17997492-17997186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):39, 185

               
               
               Conread position:55-346
               
               
               Cow position:chr6:45596710-45596398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:55-350
               
               
               Cow position:chr6:445134-445462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 201

               
               
               Conread position:55-350
               
               
               Cow position:chr6:3952345-3952657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:55-350
               
               
               Cow position:chr6:4864717-4864407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 58

               
               
               Conread position:55-350
               
               
               Cow position:chr6:5095727-5095403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:55-350
               
               
               Cow position:chr6:6343249-6343570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 168

               
               
               Conread position:55-350
               
               
               Cow position:chr6:8562539-8562858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr6:14839207-14838904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):44, 172

               
               
               Conread position:55-350
               
               
               Cow position:chr6:23532486-23532794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:55-350
               
               
               Cow position:chr6:26915153-26915468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:55-350
               
               
               Cow position:chr6:34196325-34196009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:55-350
               
               
               Cow position:chr6:38853835-38853519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:55-350
               
               
               Cow position:chr6:42961544-42961224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 196

               
               
               Conread position:55-350
               
               
               Cow position:chr6:44194722-44194410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 53

               
               
               Conread position:55-350
               
               
               Cow position:chr6:51463793-51463494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr6:63299203-63298891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 139

               
               
               Conread position:55-352
               
               
               Cow position:chr6:47799121-47799435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:55-352
               
               
               Cow position:chr6:61515375-61515051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):39, 292

               
               
               Conread position:55-364
               
               
               Cow position:chr6:16191489-16191827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:55-366
               
               
               Cow position:chr6:24781741-24781405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):44, 188

               
               
               Conread position:55-366
               
               
               Cow position:chr6:63720022-63720356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:56-165
               
               
               Cow position:chr6:17220630-17220520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr6:388995-389122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-181
               
               
               Cow position:chr6:51398625-51398754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr6:21812554-21812684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr6:36011518-36011643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:56-183
               
               
               Cow position:chr6:10649196-10649070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr6:48187757-48187618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr6:2012843-2012983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-191
               
               
               Cow position:chr6:59620493-59620633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:56-192
               
               
               Cow position:chr6:55607982-55607849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-193
               
               
               Cow position:chr6:1783948-1783813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-193
               
               
               Cow position:chr6:46245499-46245353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-200
               
               
               Cow position:chr6:9375550-9375396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 148

               
               
               Conread position:56-203
               
               
               Cow position:chr6:3719182-3719029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:56-212
               
               
               Cow position:chr6:65711651-65711817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-214
               
               
               Cow position:chr6:2896575-2896743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:56-214
               
               
               Cow position:chr6:6226848-6227013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-214
               
               
               Cow position:chr6:37246606-37246435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-214
               
               
               Cow position:chr6:65676081-65676249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-218
               
               
               Cow position:chr6:24327314-24327142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:56-225
               
               
               Cow position:chr6:53139105-53138915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr6:46400581-46400404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:56-229
               
               
               Cow position:chr6:7694530-7694353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-246
               
               
               Cow position:chr6:5462225-5462032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:56-260
               
               
               Cow position:chr6:18968949-18968740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):70, 25

               
               
               Conread position:56-260
               
               
               Cow position:chr6:58076048-58076270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-268
               
               
               Cow position:chr6:48344152-48344381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-269
               
               
               Cow position:chr6:415918-416155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-269
               
               
               Cow position:chr6:3978843-3978613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 176

               
               
               Conread position:56-269
               
               
               Cow position:chr6:8187695-8187471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-269
               
               
               Cow position:chr6:9733007-9732790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 39

               
               
               Conread position:56-269
               
               
               Cow position:chr6:21311934-21311709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:56-271
               
               
               Cow position:chr6:53345620-53345841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 169

               
               
               Conread position:56-271
               
               
               Cow position:chr6:60456654-60456880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:56-273
               
               
               Cow position:chr6:16737844-16738072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:56-274
               
               
               Cow position:chr6:49685409-49685639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:56-276
               
               
               Cow position:chr6:5958197-5957972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:56-276
               
               
               Cow position:chr6:13741519-13741757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 188

               
               
               Conread position:56-276
               
               
               Cow position:chr6:53710940-53711171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-276
               
               
               Cow position:chr6:62479342-62479104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr6:67304625-67304861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-278
               
               
               Cow position:chr6:24961969-24962201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-278
               
               
               Cow position:chr6:53731345-53731582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr6:6460363-6460602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-280
               
               
               Cow position:chr6:8804704-8804469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-280
               
               
               Cow position:chr6:16411019-16411251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-280
               
               
               Cow position:chr6:54293935-54294162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-281
               
               
               Cow position:chr6:9322983-9323210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:56-285
               
               
               Cow position:chr6:34075843-34076093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):67, 248

               
               
               Conread position:56-286
               
               
               Cow position:chr6:2607437-2607671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-286
               
               
               Cow position:chr6:8318341-8318095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:56-286
               
               
               Cow position:chr6:14850890-14850649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 223

               
               
               Conread position:56-286
               
               
               Cow position:chr6:16625771-16626008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 234

               
               
               Conread position:56-286
               
               
               Cow position:chr6:40713678-40713438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-286
               
               
               Cow position:chr6:47989009-47989237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:56-286
               
               
               Cow position:chr6:54140637-54140861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-287
               
               
               Cow position:chr6:642753-642501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:56-287
               
               
               Cow position:chr6:37467715-37467475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 167

               
               
               Conread position:56-288
               
               
               Cow position:chr6:37603347-37603568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-288
               
               
               Cow position:chr6:48169769-48170006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):55, 179

               
               
               Conread position:56-288
               
               
               Cow position:chr6:62925169-62924928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:56-289
               
               
               Cow position:chr6:34031492-34031730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-291
               
               
               Cow position:chr6:607086-607333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:56-291
               
               
               Cow position:chr6:50445939-50445695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:56-291
               
               
               Cow position:chr6:52248311-52248061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-299
               
               
               Cow position:chr6:61137195-61137454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-305
               
               
               Cow position:chr6:58073869-58074135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:56-311
               
               
               Cow position:chr6:24652358-24652107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:56-314
               
               
               Cow position:chr6:53178461-53178732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:56-320
               
               
               Cow position:chr6:41733451-41733725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:56-326
               
               
               Cow position:chr6:130341-130047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-335
               
               
               Cow position:chr6:28318233-28318522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:56-336
               
               
               Cow position:chr6:18988040-18988334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-337
               
               
               Cow position:chr6:7824585-7824878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:56-337
               
               
               Cow position:chr6:23248139-23247839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-337
               
               
               Cow position:chr6:25008538-25008845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-337
               
               
               Cow position:chr6:47305163-47305467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-337
               
               
               Cow position:chr6:54369076-54368777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:56-342
               
               
               Cow position:chr6:53401193-53401487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-343
               
               
               Cow position:chr6:7190295-7189986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:56-343
               
               
               Cow position:chr6:28148075-28148388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):44, 300

               
               
               Conread position:56-343
               
               
               Cow position:chr6:60442242-60442540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:56-344
               
               
               Cow position:chr6:24004372-24004670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:56-344
               
               
               Cow position:chr6:50271270-50270979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:56-344
               
               
               Cow position:chr6:60057832-60057521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-345
               
               
               Cow position:chr6:8965913-8966232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 221

               
               
               Conread position:56-345
               
               
               Cow position:chr6:31564509-31564203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-345
               
               
               Cow position:chr6:55475070-55475390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-345
               
               
               Cow position:chr6:65870848-65871171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-345
               
               
               Cow position:chr6:66874186-66874484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:56-346
               
               
               Cow position:chr6:5302580-5302284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:56-346
               
               
               Cow position:chr6:12652030-12652338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-346
               
               
               Cow position:chr6:14958525-14958204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-346
               
               
               Cow position:chr6:15305406-15305704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:56-346
               
               
               Cow position:chr6:16103378-16103061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):70, 196

               
               
               Conread position:56-346
               
               
               Cow position:chr6:17090419-17090734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:56-346
               
               
               Cow position:chr6:17414627-17414309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:56-346
               
               
               Cow position:chr6:21231360-21231660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-346
               
               
               Cow position:chr6:24031199-24031512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-346
               
               
               Cow position:chr6:38641322-38641628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-346
               
               
               Cow position:chr6:52901065-52901374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 35

               
               
               Conread position:56-346
               
               
               Cow position:chr6:53460748-53460431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-346
               
               
               Cow position:chr6:54864843-54864525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-346
               
               
               Cow position:chr6:56842983-56843290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-347
               
               
               Cow position:chr6:3545528-3545816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):100, 41

               
               
               Conread position:56-347
               
               
               Cow position:chr6:24223337-24223023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):6, 204

               
               
               Conread position:56-347
               
               
               Cow position:chr6:47339524-47339219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-349
               
               
               Cow position:chr6:24468567-24468257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:56-349
               
               
               Cow position:chr6:31535747-31535430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-349
               
               
               Cow position:chr6:34475726-34475423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:56-349
               
               
               Cow position:chr6:60144353-60144059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 54

               
               
               Conread position:56-350
               
               
               Cow position:chr6:242638-242931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr6:528453-528144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr6:611385-611686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr6:5609616-5609307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr6:6067853-6067562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr6:6201265-6201563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 132

               
               
               Conread position:56-350
               
               
               Cow position:chr6:7539398-7539711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:56-350
               
               
               Cow position:chr6:8209765-8209466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr6:8788213-8787897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 166

               
               
               Conread position:56-350
               
               
               Cow position:chr6:9008787-9008472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr6:10176479-10176162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr6:10400071-10399775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:56-350
               
               
               Cow position:chr6:11169528-11169841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:56-350
               
               
               Cow position:chr6:12092160-12091854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr6:12337808-12338139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr6:12500684-12500989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):48, 183

               
               
               Conread position:56-350
               
               
               Cow position:chr6:14949657-14949342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:56-350
               
               
               Cow position:chr6:15242658-15242976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-350
               
               
               Cow position:chr6:15300993-15300693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr6:16423523-16423841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr6:16706831-16707152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:56-350
               
               
               Cow position:chr6:19681700-19681386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:56-350
               
               
               Cow position:chr6:21062059-21061746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr6:21110794-21111091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr6:21534883-21535179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr6:21737058-21736753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:56-350
               
               
               Cow position:chr6:28977205-28976900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr6:31525872-31526186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-350
               
               
               Cow position:chr6:32269046-32268748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):70, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr6:32867382-32867079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 121

               
               
               Conread position:56-350
               
               
               Cow position:chr6:35181429-35181118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:56-350
               
               
               Cow position:chr6:35613590-35613277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr6:35842481-35842797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr6:35990399-35990094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-350
               
               
               Cow position:chr6:36470739-36470422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:56-350
               
               
               Cow position:chr6:37199721-37199398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 256

               
               
               Conread position:56-350
               
               
               Cow position:chr6:37783238-37783540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 141

               
               
               Conread position:56-350
               
               
               Cow position:chr6:38441006-38441312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:56-350
               
               
               Cow position:chr6:38771118-38771420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:56-350
               
               
               Cow position:chr6:40032016-40032329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr6:40774524-40774192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:56-350
               
               
               Cow position:chr6:42565510-42565827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):38, 6

               
               
               Conread position:56-350
               
               
               Cow position:chr6:47574729-47575046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr6:49421953-49421652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:56-350
               
               
               Cow position:chr6:53519799-53519484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:56-350
               
               
               Cow position:chr6:53933024-53932707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):44, 186

               
               
               Conread position:56-350
               
               
               Cow position:chr6:54490916-54490597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr6:57405301-57405002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr6:67214565-67214889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:56-351
               
               
               Cow position:chr6:6400772-6401092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:56-351
               
               
               Cow position:chr6:32125891-32126197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:56-352
               
               
               Cow position:chr6:4383316-4383620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-352
               
               
               Cow position:chr6:26910045-26909730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:56-352
               
               
               Cow position:chr6:38614648-38614953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:56-355
               
               
               Cow position:chr6:50577344-50577665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-355
               
               
               Cow position:chr6:67950783-67951094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:56-364
               
               
               Cow position:chr6:10612690-10612997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:56-364
               
               
               Cow position:chr6:38207672-38207336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:56-364
               
               
               Cow position:chr6:66531981-66531668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:56-366
               
               
               Cow position:chr6:1886839-1886511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):70, 184

               
               
               Conread position:56-366
               
               
               Cow position:chr6:6060733-6060416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-366
               
               
               Cow position:chr6:8637099-8637437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-366
               
               
               Cow position:chr6:23695821-23696158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-366
               
               
               Cow position:chr6:54132642-54132968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:56-367
               
               
               Cow position:chr6:33302236-33302551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-367
               
               
               Cow position:chr6:46570942-46571262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-367
               
               
               Cow position:chr6:51835224-51835555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:57-277
               
               
               Cow position:chr6:25773556-25773328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:57-278
               
               
               Cow position:chr6:12629849-12630079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:57-286
               
               
               Cow position:chr6:17248562-17248783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:57-287
               
               
               Cow position:chr6:8125157-8125393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:57-290
               
               
               Cow position:chr6:7131046-7130819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):119, 42

               
               
               Conread position:57-291
               
               
               Cow position:chr6:28148668-28148906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:57-314
               
               
               Cow position:chr6:59798493-59798750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):126, 35

               
               
               Conread position:57-327
               
               
               Cow position:chr6:30973866-30974159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:57-333
               
               
               Cow position:chr6:16700084-16700384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):37, 190

               
               
               Conread position:57-335
               
               
               Cow position:chr6:18049201-18048899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:57-338
               
               
               Cow position:chr6:36196039-36196338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-346
               
               
               Cow position:chr6:28477007-28477304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:57-346
               
               
               Cow position:chr6:44078346-44078650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:57-347
               
               
               Cow position:chr6:55282465-55282156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:57-350
               
               
               Cow position:chr6:19695631-19695945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:57-350
               
               
               Cow position:chr6:21869820-21869509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:57-350
               
               
               Cow position:chr6:51674743-51675047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:57-350
               
               
               Cow position:chr6:59069803-59069480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:57-364
               
               
               Cow position:chr6:65903792-65903469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:58-190
               
               
               Cow position:chr6:54885087-54884949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:58-196
               
               
               Cow position:chr6:50119961-50119817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-286
               
               
               Cow position:chr6:60819341-60819578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):41, 184

               
               
               Conread position:58-350
               
               
               Cow position:chr6:38218498-38218806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:58-350
               
               
               Cow position:chr6:54867337-54867657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:58-350
               
               
               Cow position:chr6:66433774-66434090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:58-356
               
               
               Cow position:chr6:63272788-63272467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 310

               
               
               Conread position:59-269
               
               
               Cow position:chr6:20230999-20230777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:59-277
               
               
               Cow position:chr6:66304020-66303783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 197

               
               
               Conread position:59-337
               
               
               Cow position:chr6:31635861-31635557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:59-343
               
               
               Cow position:chr6:457013-457307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:59-350
               
               
               Cow position:chr6:65264708-65264407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 296

               
               
               Conread position:59-351
               
               
               Cow position:chr6:12668934-12669236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:59-364
               
               
               Cow position:chr6:65259640-65259337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:59-367
               
               
               Cow position:chr6:66131135-66131463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:60-280
               
               
               Cow position:chr6:49410861-49410637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:60-350
               
               
               Cow position:chr6:47355652-47355962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:60-350
               
               
               Cow position:chr6:67187519-67187823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:60-366
               
               
               Cow position:chr6:10695695-10696016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:61-288
               
               
               Cow position:chr6:54287909-54288139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):98, 35

               
               
               Conread position:61-318
               
               
               Cow position:chr6:46292509-46292241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:61-343
               
               
               Cow position:chr6:46860339-46860034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:62-273
               
               
               Cow position:chr6:62324821-62325045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 187

               
               
               Conread position:62-336
               
               
               Cow position:chr6:28084185-28083896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:62-344
               
               
               Cow position:chr6:7989586-7989281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:62-347
               
               
               Cow position:chr6:54991172-54990864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:62-350
               
               
               Cow position:chr6:5114217-5113913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 104

               
               
               Conread position:63-350
               
               
               Cow position:chr6:11246595-11246906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:63-351
               
               
               Cow position:chr6:37739017-37739315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):36, 175

               
               
               Conread position:65-274
               
               
               Cow position:chr6:16764809-16764603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 62

               
               
               Conread position:65-286
               
               
               Cow position:chr6:21542153-21542388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:65-350
               
               
               Cow position:chr6:47640604-47640292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:66-346
               
               
               Cow position:chr6:49002891-49002604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:66-370
               
               
               Cow position:chr6:61631779-61631449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 180

               
               
               Conread position:69-335
               
               
               Cow position:chr6:12543096-12542805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:70-218
               
               
               Cow position:chr6:52705879-52705723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:70-286
               
               
               Cow position:chr6:44984164-44984396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 169

               
               
               Conread position:70-309
               
               
               Cow position:chr6:59108780-59109043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:70-344
               
               
               Cow position:chr6:14914401-14914102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:70-350
               
               
               Cow position:chr6:26450155-26450452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 97

               
               
               Conread position:70-353
               
               
               Cow position:chr6:15243089-15243398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):27, 89

               
               
               Conread position:70-391
               
               
               Cow position:chr6:60783708-60784047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 302

               
               
               Conread position:71-286
               
               
               Cow position:chr6:5445462-5445688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 223

               
               
               Conread position:72-280
               
               
               Cow position:chr6:40834633-40834408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:72-286
               
               
               Cow position:chr6:49694215-49694444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 178

               
               
               Conread position:72-337
               
               
               Cow position:chr6:899450-899166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:72-350
               
               
               Cow position:chr6:27888188-27888490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 268

               
               
               Conread position:72-350
               
               
               Cow position:chr6:57546376-57546089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 124

               
               
               Conread position:73-288
               
               
               Cow position:chr6:30688766-30688547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:73-347
               
               
               Cow position:chr6:53673706-53674000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:73-395
               
               
               Cow position:chr6:34251446-34251117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:76-350
               
               
               Cow position:chr6:582424-582134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:76-351
               
               
               Cow position:chr6:50984068-50984363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:76-352
               
               
               Cow position:chr6:60739859-60740156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 169

               
               
               Conread position:77-350
               
               
               Cow position:chr6:67323161-67323448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:78-286
               
               
               Cow position:chr6:57298866-57299080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:78-288
               
               
               Cow position:chr6:4559458-4559237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 149

               
               
               Conread position:78-350
               
               
               Cow position:chr6:19446106-19446389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:81-350
               
               
               Cow position:chr6:4692135-4691837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):18, 280

               
               
               Conread position:81-365
               
               
               Cow position:chr6:48112053-48112351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:85-344
               
               
               Cow position:chr6:9219126-9219400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:85-364
               
               
               Cow position:chr6:57571326-57571635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):14, 73

               
               
               Conread position:85-366
               
               
               Cow position:chr6:46283145-46282849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 67

               
               
               Conread position:86-269
               
               
               Cow position:chr6:29266059-29266253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 165

               
               
               Conread position:87-260
               
               
               Cow position:chr6:602948-603136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:91-347
               
               
               Cow position:chr6:12845242-12845512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:98-196
               
               
               Cow position:chr6:50509545-50509647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:98-326
               
               
               Cow position:chr6:19996487-19996730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):7, 133

               
               
               Conread position:98-334
               
               
               Cow position:chr6:60118013-60118274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:98-343
               
               
               Cow position:chr6:38609835-38610101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:99-279
               
               
               Cow position:chr6:19351286-19351099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:99-350
               
               
               Cow position:chr6:62669742-62670004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:100-251
               
               
               Cow position:chr6:16316179-16316333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:100-343
               
               
               Cow position:chr6:29000053-28999806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 49

               
               
               Conread position:100-350
               
               
               Cow position:chr6:17313603-17313872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:100-355
               
               
               Cow position:chr6:21399884-21399611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 260

               
               
               Conread position:101-350
               
               
               Cow position:chr6:48803767-48803499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:101-350
               
               
               Cow position:chr6:60667291-60667550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):50, 132

               
               
               Conread position:104-345
               
               
               Cow position:chr6:5413692-5413948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:104-346
               
               
               Cow position:chr6:45065141-45064881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:105-287
               
               
               Cow position:chr6:38233834-38234026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:105-347
               
               
               Cow position:chr6:23402115-23401856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:108-350
               
               
               Cow position:chr6:21234921-21235183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:109-346
               
               
               Cow position:chr6:19292677-19292937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:109-350
               
               
               Cow position:chr6:10225761-10225516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:109-350
               
               
               Cow position:chr6:33206630-33206875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:118-350
               
               
               Cow position:chr6:37462912-37463162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:120-350
               
               
               Cow position:chr6:26043644-26043878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 29

               
               
               Conread position:122-347
               
               
               Cow position:chr6:36645282-36645522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:123-350
               
               
               Cow position:chr6:59603312-59603068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:123-350
               
               
               Cow position:chr6:59718691-59718936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:124-350
               
               
               Cow position:chr6:7119714-7119479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):154, 27

               
               
               Conread position:125-350
               
               
               Cow position:chr6:58370650-58370890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 193

               
               
               Conread position:125-352
               
               
               Cow position:chr6:17549084-17548832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:126-350
               
               
               Cow position:chr6:20196395-20196163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:127-346
               
               
               Cow position:chr6:51968963-51969212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:127-350
               
               
               Cow position:chr6:3592300-3592536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 214

               
               
               Conread position:129-350
               
               
               Cow position:chr6:17794855-17794624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:132-353
               
               
               Cow position:chr6:66375426-66375190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:136-350
               
               
               Cow position:chr6:143460-143235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:149-346
               
               
               Cow position:chr6:2623702-2623909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:159-350
               
               
               Cow position:chr6:55535813-55535612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:161-350
               
               
               Cow position:chr6:41656100-41655902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:163-350
               
               
               Cow position:chr6:28179012-28178815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:168-350
               
               
               Cow position:chr6:10224145-10224331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:168-350
               
               
               Cow position:chr6:32853132-32853327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:174-364
               
               
               Cow position:chr6:67451418-67451215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:179-350
               
               
               Cow position:chr6:19131389-19131570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 52

               
               
               Conread position:186-350
               
               
               Cow position:chr6:37395441-37395261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 174

               
               
               Conread position:186-366
               
               
               Cow position:chr6:2078853-2078658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:186-366
               
               
               Cow position:chr6:68652386-68652195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:188-350
               
               
               Cow position:chr6:35896371-35896214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):125, 18

               
               
               Conread position:188-350
               
               
               Cow position:chr6:61142595-61142423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 169

               
               
               Conread position:194-347
               
               
               Cow position:chr6:33929575-33929410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:195-350
               
               
               Cow position:chr6:47885046-47884890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:32-367
               
               
               Cow position:chr7:56348015-56347667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:41-350
               
               
               Cow position:chr7:61790546-61790210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:47-275
               
               
               Cow position:chr7:43103637-43103383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:48-347
               
               
               Cow position:chr7:67839161-67839481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 6

               
               
               Conread position:49-280
               
               
               Cow position:chr7:3176128-3175898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:49-319
               
               
               Cow position:chr7:36097872-36098136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:49-350
               
               
               Cow position:chr7:39129772-39129467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:50-235
               
               
               Cow position:chr7:57911428-57911626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:51-234
               
               
               Cow position:chr7:24778289-24778099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:53-347
               
               
               Cow position:chr7:52536426-52536114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 5

               
               
               Conread position:53-350
               
               
               Cow position:chr7:40189381-40189692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:55-163
               
               
               Cow position:chr7:21521907-21522019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr7:6077887-6077754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-190
               
               
               Cow position:chr7:24213705-24213847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-191
               
               
               Cow position:chr7:39145927-39145788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:55-206
               
               
               Cow position:chr7:40070267-40070417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:55-220
               
               
               Cow position:chr7:29010565-29010393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:55-225
               
               
               Cow position:chr7:29474512-29474696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:55-241
               
               
               Cow position:chr7:60749010-60749203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:55-244
               
               
               Cow position:chr7:26012249-26012452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:55-252
               
               
               Cow position:chr7:23619260-23619047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):44, 97

               
               
               Conread position:55-260
               
               
               Cow position:chr7:28090065-28090276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:55-266
               
               
               Cow position:chr7:3728916-3729136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-269
               
               
               Cow position:chr7:35652255-35652021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-274
               
               
               Cow position:chr7:64102583-64102354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:55-277
               
               
               Cow position:chr7:61765139-61765377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:55-280
               
               
               Cow position:chr7:32819637-32819881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:55-286
               
               
               Cow position:chr7:32791519-32791768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 185

               
               
               Conread position:55-288
               
               
               Cow position:chr7:27349402-27349167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:55-305
               
               
               Cow position:chr7:64236465-64236196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 212

               
               
               Conread position:55-314
               
               
               Cow position:chr7:21526580-21526312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 175

               
               
               Conread position:55-320
               
               
               Cow position:chr7:67816734-67817010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:55-337
               
               
               Cow position:chr7:19399851-19399548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-338
               
               
               Cow position:chr7:36996203-36996492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:55-347
               
               
               Cow position:chr7:15566595-15566891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):126, 34

               
               
               Conread position:55-350
               
               
               Cow position:chr7:14450180-14450467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:55-350
               
               
               Cow position:chr7:18508705-18508400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:55-350
               
               
               Cow position:chr7:23568915-23568595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-350
               
               
               Cow position:chr7:24796866-24796567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:55-350
               
               
               Cow position:chr7:25195360-25195683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 174

               
               
               Conread position:55-350
               
               
               Cow position:chr7:26631986-26631670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:55-350
               
               
               Cow position:chr7:30156133-30155807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 320

               
               
               Conread position:55-350
               
               
               Cow position:chr7:38060608-38060284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:55-350
               
               
               Cow position:chr7:47775693-47776002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:55-350
               
               
               Cow position:chr7:54712240-54712563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:55-351
               
               
               Cow position:chr7:14459091-14458779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 118

               
               
               Conread position:55-351
               
               
               Cow position:chr7:23624822-23624525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:55-351
               
               
               Cow position:chr7:26911612-26911297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:55-364
               
               
               Cow position:chr7:38696673-38697000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 186

               
               
               Conread position:55-364
               
               
               Cow position:chr7:60153264-60153609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:56-176
               
               
               Cow position:chr7:13219564-13219441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-181
               
               
               Cow position:chr7:6745027-6745159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr7:11160175-11160041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr7:33068474-33068341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr7:35779275-35779406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 118

               
               
               Conread position:56-182
               
               
               Cow position:chr7:46116825-46116693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-182
               
               
               Cow position:chr7:54583503-54583630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr7:25393115-25393247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:56-190
               
               
               Cow position:chr7:57161975-57162115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr7:10069882-10069746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:56-193
               
               
               Cow position:chr7:40709935-40710079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-212
               
               
               Cow position:chr7:14187409-14187243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:56-220
               
               
               Cow position:chr7:15654250-15654072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-220
               
               
               Cow position:chr7:63085388-63085562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-230
               
               
               Cow position:chr7:45658560-45658374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-234
               
               
               Cow position:chr7:8813100-8812908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-246
               
               
               Cow position:chr7:53992524-53992729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:56-248
               
               
               Cow position:chr7:32824427-32824224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:56-253
               
               
               Cow position:chr7:4418640-4418423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-257
               
               
               Cow position:chr7:53034486-53034281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 33

               
               
               Conread position:56-259
               
               
               Cow position:chr7:26888138-26887914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:56-261
               
               
               Cow position:chr7:39401781-39402002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-268
               
               
               Cow position:chr7:34004193-34004400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:56-269
               
               
               Cow position:chr7:39529174-39528940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-272
               
               
               Cow position:chr7:12202090-12201872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:56-272
               
               
               Cow position:chr7:58614620-58614843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-273
               
               
               Cow position:chr7:13928328-13928097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-274
               
               
               Cow position:chr7:42431650-42431885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-276
               
               
               Cow position:chr7:12212780-12212541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 168

               
               
               Conread position:56-276
               
               
               Cow position:chr7:21573111-21573351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:56-276
               
               
               Cow position:chr7:26915140-26915375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 189

               
               
               Conread position:56-276
               
               
               Cow position:chr7:33804802-33805028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 6

               
               
               Conread position:56-276
               
               
               Cow position:chr7:40311518-40311288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:56-276
               
               
               Cow position:chr7:54090029-54090267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 182

               
               
               Conread position:56-276
               
               
               Cow position:chr7:63771728-63771962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:56-278
               
               
               Cow position:chr7:15608236-15608466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-278
               
               
               Cow position:chr7:65818630-65818398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 170

               
               
               Conread position:56-279
               
               
               Cow position:chr7:9074886-9075113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-280
               
               
               Cow position:chr7:205577-205801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:56-280
               
               
               Cow position:chr7:20469310-20469542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-280
               
               
               Cow position:chr7:34569026-34569250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-280
               
               
               Cow position:chr7:40305734-40305509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:56-280
               
               
               Cow position:chr7:40991532-40991767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:56-280
               
               
               Cow position:chr7:44095117-44094872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr7:51072066-51072306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):40, 188

               
               
               Conread position:56-281
               
               
               Cow position:chr7:60547838-60547602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:56-281
               
               
               Cow position:chr7:66179973-66179727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-286
               
               
               Cow position:chr7:1558562-1558801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-286
               
               
               Cow position:chr7:24767399-24767162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:56-286
               
               
               Cow position:chr7:25960298-25960533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:56-286
               
               
               Cow position:chr7:32372685-32372928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-286
               
               
               Cow position:chr7:34433453-34433214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:56-287
               
               
               Cow position:chr7:1375520-1375763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:56-287
               
               
               Cow position:chr7:6706123-6706369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 198

               
               
               Conread position:56-287
               
               
               Cow position:chr7:54857190-54857413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:56-287
               
               
               Cow position:chr7:63968375-63968143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):103, 38

               
               
               Conread position:56-287
               
               
               Cow position:chr7:64269160-64268925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 138

               
               
               Conread position:56-288
               
               
               Cow position:chr7:10551142-10550905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):103, 35

               
               
               Conread position:56-288
               
               
               Cow position:chr7:19096205-19095957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-288
               
               
               Cow position:chr7:34223510-34223764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-288
               
               
               Cow position:chr7:63112946-63112705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:56-290
               
               
               Cow position:chr7:59941448-59941700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:56-291
               
               
               Cow position:chr7:20415478-20415215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-298
               
               
               Cow position:chr7:58427921-58428157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:56-302
               
               
               Cow position:chr7:11161072-11161327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:56-310
               
               
               Cow position:chr7:53361550-53361297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:56-312
               
               
               Cow position:chr7:24932587-24932314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-314
               
               
               Cow position:chr7:4864210-4863943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr7:45592865-45593144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-318
               
               
               Cow position:chr7:17967292-17967016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:56-325
               
               
               Cow position:chr7:44590020-44589741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:56-326
               
               
               Cow position:chr7:54513596-54513287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-328
               
               
               Cow position:chr7:17756865-17757153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-328
               
               
               Cow position:chr7:35275250-35274960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-330
               
               
               Cow position:chr7:39930124-39930406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:56-332
               
               
               Cow position:chr7:32283739-32284045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 197

               
               
               Conread position:56-332
               
               
               Cow position:chr7:53097424-53097715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:56-335
               
               
               Cow position:chr7:26485399-26485698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:56-337
               
               
               Cow position:chr7:34554087-34554388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-337
               
               
               Cow position:chr7:39147623-39147932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-337
               
               
               Cow position:chr7:42244867-42244572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-337
               
               
               Cow position:chr7:57537698-57537394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-338
               
               
               Cow position:chr7:25496566-25496854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:56-338
               
               
               Cow position:chr7:59558336-59558047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:56-342
               
               
               Cow position:chr7:37142538-37142239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 184

               
               
               Conread position:56-342
               
               
               Cow position:chr7:51319622-51319941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-343
               
               
               Cow position:chr7:19798106-19797794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-343
               
               
               Cow position:chr7:21649928-21650234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 99

               
               
               Conread position:56-343
               
               
               Cow position:chr7:25722842-25722531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-343
               
               
               Cow position:chr7:30276559-30276870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):48, 113

               
               
               Conread position:56-343
               
               
               Cow position:chr7:56820745-56820447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-344
               
               
               Cow position:chr7:12408413-12408105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:56-345
               
               
               Cow position:chr7:33393138-33393446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 121

               
               
               Conread position:56-345
               
               
               Cow position:chr7:45748008-45747716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:56-346
               
               
               Cow position:chr7:3283186-3283497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-346
               
               
               Cow position:chr7:9146469-9146780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 121

               
               
               Conread position:56-346
               
               
               Cow position:chr7:11066301-11066617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:56-346
               
               
               Cow position:chr7:23935936-23936249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 211

               
               
               Conread position:56-346
               
               
               Cow position:chr7:32711154-32710847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-346
               
               
               Cow position:chr7:36278121-36278436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:56-346
               
               
               Cow position:chr7:37361710-37362014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:56-346
               
               
               Cow position:chr7:46857134-46856825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-346
               
               
               Cow position:chr7:50075900-50075605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-346
               
               
               Cow position:chr7:58863057-58862746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:56-347
               
               
               Cow position:chr7:20228-20548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:56-347
               
               
               Cow position:chr7:3311666-3311978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-347
               
               
               Cow position:chr7:3336725-3336417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr7:11176880-11176590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:56-347
               
               
               Cow position:chr7:31694795-31694500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):218, 43

               
               
               Conread position:56-347
               
               
               Cow position:chr7:36830489-36830790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:56-347
               
               
               Cow position:chr7:58170567-58170878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-349
               
               
               Cow position:chr7:43711045-43711355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-349
               
               
               Cow position:chr7:64003296-64003598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-350
               
               
               Cow position:chr7:147238-147557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr7:255982-255677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-350
               
               
               Cow position:chr7:1761545-1761873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:56-350
               
               
               Cow position:chr7:2172583-2172892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:56-350
               
               
               Cow position:chr7:4129964-4129638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr7:6057957-6058270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 125

               
               
               Conread position:56-350
               
               
               Cow position:chr7:10122536-10122834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr7:10512886-10512571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr7:13593603-13593910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr7:14029162-14029451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr7:14520209-14519899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr7:15855482-15855189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr7:17713639-17713329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):69, 23

               
               
               Conread position:56-350
               
               
               Cow position:chr7:17782846-17782550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:56-350
               
               
               Cow position:chr7:17816580-17816891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr7:18388572-18388258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-350
               
               
               Cow position:chr7:20537188-20537509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr7:21240283-21239986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-350
               
               
               Cow position:chr7:22793173-22793486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-350
               
               
               Cow position:chr7:23205803-23205486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr7:23646429-23646753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr7:25415222-25415535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 193

               
               
               Conread position:56-350
               
               
               Cow position:chr7:26737513-26737204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr7:27283505-27283816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr7:30932150-30931835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:56-350
               
               
               Cow position:chr7:31315147-31315450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr7:32079285-32079593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-350
               
               
               Cow position:chr7:33697799-33698096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr7:33719878-33720176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 117

               
               
               Conread position:56-350
               
               
               Cow position:chr7:34084424-34084118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 168

               
               
               Conread position:56-350
               
               
               Cow position:chr7:35286805-35286498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr7:35893237-35893558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr7:36533858-36534165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr7:37697630-37697946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 311

               
               
               Conread position:56-350
               
               
               Cow position:chr7:37952005-37952320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-350
               
               
               Cow position:chr7:38081982-38082298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr7:39155399-39155719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):48, 314

               
               
               Conread position:56-350
               
               
               Cow position:chr7:39325569-39325868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr7:39451307-39451007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr7:39518127-39518425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:56-350
               
               
               Cow position:chr7:39903930-39904237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:56-350
               
               
               Cow position:chr7:40008644-40008970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 320

               
               
               Conread position:56-350
               
               
               Cow position:chr7:40067484-40067802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 205

               
               
               Conread position:56-350
               
               
               Cow position:chr7:40321312-40321629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-350
               
               
               Cow position:chr7:40894347-40894684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 206

               
               
               Conread position:56-350
               
               
               Cow position:chr7:40953036-40952723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr7:41293922-41293605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 312

               
               
               Conread position:56-350
               
               
               Cow position:chr7:41328212-41327892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:56-350
               
               
               Cow position:chr7:42223120-42222798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 311

               
               
               Conread position:56-350
               
               
               Cow position:chr7:42894277-42894591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):122, 61

               
               
               Conread position:56-350
               
               
               Cow position:chr7:43109705-43109399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:56-350
               
               
               Cow position:chr7:43908034-43908348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr7:44596867-44596560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr7:44986484-44986795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr7:45157958-45158259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:56-350
               
               
               Cow position:chr7:45331371-45331680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr7:48243501-48243814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr7:48667253-48667556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:56-350
               
               
               Cow position:chr7:49106376-49106059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr7:49648191-49648499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:56-350
               
               
               Cow position:chr7:50859835-50860149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr7:51019613-51019920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr7:51039258-51039572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr7:52784977-52784664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-350
               
               
               Cow position:chr7:53382023-53382337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr7:53612972-53613274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:56-350
               
               
               Cow position:chr7:57593267-57593572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr7:59075677-59075991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 59

               
               
               Conread position:56-350
               
               
               Cow position:chr7:59168104-59168407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr7:59688367-59688680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):103, 60

               
               
               Conread position:56-350
               
               
               Cow position:chr7:59843929-59843608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr7:61551735-61552062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):67, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr7:63946748-63946444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr7:65122169-65122474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:56-350
               
               
               Cow position:chr7:66748697-66748397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-350
               
               
               Cow position:chr7:66894714-66894398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 304

               
               
               Conread position:56-350
               
               
               Cow position:chr7:68173328-68173019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 212

               
               
               Conread position:56-351
               
               
               Cow position:chr7:20176884-20176565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-351
               
               
               Cow position:chr7:34422436-34422128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-351
               
               
               Cow position:chr7:40263826-40263514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-351
               
               
               Cow position:chr7:51909959-51910263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-351
               
               
               Cow position:chr7:52383147-52382836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-352
               
               
               Cow position:chr7:25867679-25867356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-352
               
               
               Cow position:chr7:28563556-28563246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-353
               
               
               Cow position:chr7:29300933-29300622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:56-353
               
               
               Cow position:chr7:57259203-57258879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:56-354
               
               
               Cow position:chr7:28324461-28324771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 197

               
               
               Conread position:56-355
               
               
               Cow position:chr7:52776929-52776612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-361
               
               
               Cow position:chr7:24873269-24872948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 237

               
               
               Conread position:56-362
               
               
               Cow position:chr7:39144516-39144846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-363
               
               
               Cow position:chr7:11870004-11869685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:56-364
               
               
               Cow position:chr7:600166-600481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-364
               
               
               Cow position:chr7:15755623-15755288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-364
               
               
               Cow position:chr7:32894426-32894092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:56-364
               
               
               Cow position:chr7:53988885-53989208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:56-366
               
               
               Cow position:chr7:20534699-20535030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:56-366
               
               
               Cow position:chr7:44454444-44454120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:56-366
               
               
               Cow position:chr7:62733006-62733337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):40, 329

               
               
               Conread position:56-367
               
               
               Cow position:chr7:39415731-39416068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-367
               
               
               Cow position:chr7:59691899-59692230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:57-177
               
               
               Cow position:chr7:27073051-27072928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-218
               
               
               Cow position:chr7:37718382-37718543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 63

               
               
               Conread position:57-244
               
               
               Cow position:chr7:14712366-14712172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:57-276
               
               
               Cow position:chr7:7476618-7476389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:57-286
               
               
               Cow position:chr7:39042432-39042665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:57-288
               
               
               Cow position:chr7:49942599-49942359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 186

               
               
               Conread position:57-314
               
               
               Cow position:chr7:44496737-44496466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):42, 136

               
               
               Conread position:57-332
               
               
               Cow position:chr7:268821-269103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 136

               
               
               Conread position:57-337
               
               
               Cow position:chr7:19267542-19267241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:57-342
               
               
               Cow position:chr7:16022129-16022429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:57-343
               
               
               Cow position:chr7:52718807-52718504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:57-344
               
               
               Cow position:chr7:8658363-8658651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:57-344
               
               
               Cow position:chr7:48406673-48406357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 194

               
               
               Conread position:57-345
               
               
               Cow position:chr7:25512293-25511987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:57-350
               
               
               Cow position:chr7:9136666-9136980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:57-350
               
               
               Cow position:chr7:9193416-9193096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):69, 317

               
               
               Conread position:57-350
               
               
               Cow position:chr7:11011865-11011538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 324

               
               
               Conread position:57-350
               
               
               Cow position:chr7:11872771-11872464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:57-350
               
               
               Cow position:chr7:33385761-33386063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:57-350
               
               
               Cow position:chr7:39167732-39168022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:57-350
               
               
               Cow position:chr7:47513864-47513543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-350
               
               
               Cow position:chr7:47931968-47931655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:57-350
               
               
               Cow position:chr7:48020262-48020570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):127, 39

               
               
               Conread position:57-350
               
               
               Cow position:chr7:52294959-52295255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:57-350
               
               
               Cow position:chr7:63022967-63023283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 286

               
               
               Conread position:57-350
               
               
               Cow position:chr7:68170773-68170457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:57-352
               
               
               Cow position:chr7:32914938-32915259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:57-355
               
               
               Cow position:chr7:63749652-63749329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:57-364
               
               
               Cow position:chr7:31171125-31170798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:57-366
               
               
               Cow position:chr7:60483594-60483271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:57-366
               
               
               Cow position:chr7:64135637-64135308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):42, 178

               
               
               Conread position:58-197
               
               
               Cow position:chr7:3026895-3026750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:58-276
               
               
               Cow position:chr7:11715532-11715773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-279
               
               
               Cow position:chr7:41445189-41445424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-280
               
               
               Cow position:chr7:61818109-61817873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:58-286
               
               
               Cow position:chr7:22624277-22624035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 239

               
               
               Conread position:58-286
               
               
               Cow position:chr7:64573232-64572992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:58-337
               
               
               Cow position:chr7:18964756-18965038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:58-342
               
               
               Cow position:chr7:2884172-2884471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:58-346
               
               
               Cow position:chr7:44049538-44049233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:58-347
               
               
               Cow position:chr7:45955754-45956068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 142

               
               
               Conread position:58-347
               
               
               Cow position:chr7:59245791-59246094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:58-350
               
               
               Cow position:chr7:249676-249364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 182

               
               
               Conread position:58-350
               
               
               Cow position:chr7:1721140-1720829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 306

               
               
               Conread position:58-350
               
               
               Cow position:chr7:15569871-15570180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:58-350
               
               
               Cow position:chr7:28095714-28096012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:58-350
               
               
               Cow position:chr7:40303436-40303115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 182

               
               
               Conread position:58-350
               
               
               Cow position:chr7:46823497-46823811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 184

               
               
               Conread position:58-350
               
               
               Cow position:chr7:64948946-64949249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:58-350
               
               
               Cow position:chr7:69066525-69066838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-351
               
               
               Cow position:chr7:48722077-48721762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:58-352
               
               
               Cow position:chr7:26838489-26838795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:58-364
               
               
               Cow position:chr7:29280192-29279863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:58-364
               
               
               Cow position:chr7:64364700-64364370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:59-276
               
               
               Cow position:chr7:28427845-28428066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:59-279
               
               
               Cow position:chr7:41718465-41718684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:59-342
               
               
               Cow position:chr7:62603012-62603311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 184

               
               
               Conread position:59-347
               
               
               Cow position:chr7:55694215-55693913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:59-350
               
               
               Cow position:chr7:39160005-39160325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 304

               
               
               Conread position:60-240
               
               
               Cow position:chr7:24146474-24146666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:60-336
               
               
               Cow position:chr7:39444771-39444484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:60-350
               
               
               Cow position:chr7:4892699-4893001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:61-212
               
               
               Cow position:chr7:11422473-11422634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:61-337
               
               
               Cow position:chr7:20168385-20168679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:61-350
               
               
               Cow position:chr7:27990851-27990538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:62-281
               
               
               Cow position:chr7:46148696-46148922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:62-347
               
               
               Cow position:chr7:67819952-67820255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:62-351
               
               
               Cow position:chr7:18307011-18306703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:63-286
               
               
               Cow position:chr7:53269024-53269267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 230

               
               
               Conread position:63-350
               
               
               Cow position:chr7:41464296-41464609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:63-350
               
               
               Cow position:chr7:53763751-53763452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:66-367
               
               
               Cow position:chr7:1375983-1376292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:67-347
               
               
               Cow position:chr7:7507394-7507688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 285

               
               
               Conread position:69-364
               
               
               Cow position:chr7:4764680-4765002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:70-291
               
               
               Cow position:chr7:40051919-40051686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:70-350
               
               
               Cow position:chr7:14174569-14174284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:70-350
               
               
               Cow position:chr7:24220519-24220810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:71-269
               
               
               Cow position:chr7:24564778-24564566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 176

               
               
               Conread position:71-350
               
               
               Cow position:chr7:5027310-5027028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:72-298
               
               
               Cow position:chr7:44942301-44942536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 47

               
               
               Conread position:72-350
               
               
               Cow position:chr7:9800195-9800497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:72-350
               
               
               Cow position:chr7:49750972-49751266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:73-348
               
               
               Cow position:chr7:57660319-57660026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:73-350
               
               
               Cow position:chr7:19230663-19230371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:73-350
               
               
               Cow position:chr7:46051498-46051797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:74-287
               
               
               Cow position:chr7:40335883-40336109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 187

               
               
               Conread position:76-346
               
               
               Cow position:chr7:18188374-18188091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 77

               
               
               Conread position:76-359
               
               
               Cow position:chr7:22651980-22651678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 165

               
               
               Conread position:78-285
               
               
               Cow position:chr7:36714786-36714561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):18, 223

               
               
               Conread position:80-350
               
               
               Cow position:chr7:23090274-23090005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:80-366
               
               
               Cow position:chr7:14536433-14536125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):19, 301

               
               
               Conread position:81-276
               
               
               Cow position:chr7:43055848-43055646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):18, 136

               
               
               Conread position:81-344
               
               
               Cow position:chr7:29121778-29122036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:81-344
               
               
               Cow position:chr7:30816435-30816156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 178

               
               
               Conread position:82-356
               
               
               Cow position:chr7:50371963-50372241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):17, 69

               
               
               Conread position:83-350
               
               
               Cow position:chr7:20918492-20918204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:87-341
               
               
               Cow position:chr7:68315104-68315369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:90-288
               
               
               Cow position:chr7:8375134-8375341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:95-311
               
               
               Cow position:chr7:68909055-68909279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):9, 150

               
               
               Conread position:96-337
               
               
               Cow position:chr7:23256982-23256726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:96-350
               
               
               Cow position:chr7:34412407-34412136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 145

               
               
               Conread position:96-350
               
               
               Cow position:chr7:58351088-58350824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:96-366
               
               
               Cow position:chr7:14524347-14524637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:97-286
               
               
               Cow position:chr7:68516811-68516623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:97-345
               
               
               Cow position:chr7:23251689-23251429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:98-259
               
               
               Cow position:chr7:35742537-35742360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:98-277
               
               
               Cow position:chr7:5300522-5300332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:98-347
               
               
               Cow position:chr7:31881546-31881799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:98-350
               
               
               Cow position:chr7:58923264-58923540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):7, 148

               
               
               Conread position:100-280
               
               
               Cow position:chr7:37184238-37184421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 121

               
               
               Conread position:100-342
               
               
               Cow position:chr7:12755273-12755023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:100-347
               
               
               Cow position:chr7:8272530-8272801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:100-354
               
               
               Cow position:chr7:5212607-5212330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):26, 142

               
               
               Conread position:101-292
               
               
               Cow position:chr7:26861190-26861379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:101-350
               
               
               Cow position:chr7:40074553-40074826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:102-286
               
               
               Cow position:chr7:8883884-8884060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:102-337
               
               
               Cow position:chr7:24667267-24667513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:103-367
               
               
               Cow position:chr7:23636582-23636863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:104-350
               
               
               Cow position:chr7:5853236-5853490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:105-284
               
               
               Cow position:chr7:23641079-23640892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:108-289
               
               
               Cow position:chr7:41392854-41393045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:111-350
               
               
               Cow position:chr7:7506253-7505984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:113-364
               
               
               Cow position:chr7:15559578-15559845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:115-346
               
               
               Cow position:chr7:34974203-34974447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:120-346
               
               
               Cow position:chr7:12358190-12357961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:122-350
               
               
               Cow position:chr7:28544072-28544318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:122-350
               
               
               Cow position:chr7:50900791-50900544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:122-368
               
               
               Cow position:chr7:32910441-32910699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:123-346
               
               
               Cow position:chr7:49417501-49417744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:123-362
               
               
               Cow position:chr7:32945971-32946223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:123-364
               
               
               Cow position:chr7:5199653-5199394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:124-344
               
               
               Cow position:chr7:61731991-61731756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 104

               
               
               Conread position:124-350
               
               
               Cow position:chr7:13067057-13067298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 104

               
               
               Conread position:134-291
               
               
               Cow position:chr7:22938311-22938462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:134-357
               
               
               Cow position:chr7:50566291-50566052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:139-344
               
               
               Cow position:chr7:69132865-69133085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 211

               
               
               Conread position:145-269
               
               
               Cow position:chr7:31675952-31675823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:145-350
               
               
               Cow position:chr7:36774285-36774509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):33, 221

               
               
               Conread position:145-350
               
               
               Cow position:chr7:40308597-40308378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:148-286
               
               
               Cow position:chr7:18253423-18253568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:151-346
               
               
               Cow position:chr7:39823672-39823462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:152-350
               
               
               Cow position:chr7:53606397-53606191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:152-351
               
               
               Cow position:chr7:2816197-2816402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:153-342
               
               
               Cow position:chr7:24460885-24461085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:153-353
               
               
               Cow position:chr7:30017590-30017373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:175-350
               
               
               Cow position:chr7:37003778-37003950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:182-350
               
               
               Cow position:chr7:35245625-35245449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:185-350
               
               
               Cow position:chr7:11549633-11549804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):93, 168

               
               
               Conread position:185-350
               
               
               Cow position:chr7:29505081-29505257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:185-359
               
               
               Cow position:chr7:168700-168515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr7:8089130-8089307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:186-350
               
               
               Cow position:chr7:18947776-18947605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:186-350
               
               
               Cow position:chr7:60869919-60870083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:186-351
               
               
               Cow position:chr7:54054557-54054730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 152

               
               
               Conread position:187-364
               
               
               Cow position:chr7:52758445-52758626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 41

               
               
               Conread position:192-350
               
               
               Cow position:chr7:49630154-49630319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:199-350
               
               
               Cow position:chr7:25393285-25393441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 150

               
               
               Conread position:244-350
               
               
               Cow position:chr7:39473077-39472969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:32-171
               
               
               Cow position:chr8:44674627-44674484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:50-291
               
               
               Cow position:chr8:24832162-24832417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:51-290
               
               
               Cow position:chr8:6417430-6417184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 232

               
               
               Conread position:53-286
               
               
               Cow position:chr8:21961040-21961283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):46, 175

               
               
               Conread position:53-350
               
               
               Cow position:chr8:1023752-1024069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):46, 193

               
               
               Conread position:54-216
               
               
               Cow position:chr8:2621513-2621687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:54-223
               
               
               Cow position:chr8:33849446-33849622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:54-291
               
               
               Cow position:chr8:18831530-18831780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:55-196
               
               
               Cow position:chr8:24905288-24905439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:55-259
               
               
               Cow position:chr8:46623744-46623533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:55-260
               
               
               Cow position:chr8:51862045-51862239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:55-264
               
               
               Cow position:chr8:1327228-1327446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:55-272
               
               
               Cow position:chr8:1596378-1596148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:55-272
               
               
               Cow position:chr8:5485087-5484846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 226

               
               
               Conread position:55-276
               
               
               Cow position:chr8:10802375-10802137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):44, 219

               
               
               Conread position:55-276
               
               
               Cow position:chr8:53964946-53964719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:55-276
               
               
               Cow position:chr8:56581404-56581180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:55-276
               
               
               Cow position:chr8:56824219-56824000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:55-280
               
               
               Cow position:chr8:36648667-36648426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 192

               
               
               Conread position:55-286
               
               
               Cow position:chr8:45690107-45689863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:55-290
               
               
               Cow position:chr8:25871518-25871769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 208

               
               
               Conread position:55-333
               
               
               Cow position:chr8:9917685-9917977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:55-333
               
               
               Cow position:chr8:14947512-14947202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 204

               
               
               Conread position:55-335
               
               
               Cow position:chr8:3338880-3339175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:55-337
               
               
               Cow position:chr8:25591612-25591913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):46, 188

               
               
               Conread position:55-342
               
               
               Cow position:chr8:59187826-59188133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 157

               
               
               Conread position:55-343
               
               
               Cow position:chr8:49687430-49687114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):44, 220

               
               
               Conread position:55-344
               
               
               Cow position:chr8:47461658-47461964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 136

               
               
               Conread position:55-346
               
               
               Cow position:chr8:33432052-33432366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 59

               
               
               Conread position:55-347
               
               
               Cow position:chr8:13374338-13374653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:55-350
               
               
               Cow position:chr8:642763-642467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:55-350
               
               
               Cow position:chr8:1999415-1999739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):44, 319

               
               
               Conread position:55-350
               
               
               Cow position:chr8:7149892-7149590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:55-350
               
               
               Cow position:chr8:24390405-24390085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):44, 216

               
               
               Conread position:55-350
               
               
               Cow position:chr8:39592380-39592699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-350
               
               
               Cow position:chr8:39630564-39630883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-350
               
               
               Cow position:chr8:43168231-43167917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:55-350
               
               
               Cow position:chr8:45878838-45879144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:55-350
               
               
               Cow position:chr8:45925420-45925726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:55-351
               
               
               Cow position:chr8:3704416-3704735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-351
               
               
               Cow position:chr8:20107992-20107678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:55-353
               
               
               Cow position:chr8:46952321-46952628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:56-176
               
               
               Cow position:chr8:52198290-52198414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:56-181
               
               
               Cow position:chr8:50957531-50957409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:56-182
               
               
               Cow position:chr8:10176350-10176217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-182
               
               
               Cow position:chr8:16093076-16093200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:56-182
               
               
               Cow position:chr8:20563968-20563838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-182
               
               
               Cow position:chr8:41264101-41264230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-182
               
               
               Cow position:chr8:45664569-45664698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr8:54572438-54572569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr8:13922228-13922353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-184
               
               
               Cow position:chr8:43687335-43687471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr8:47550141-47550001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr8:47665898-47665763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-190
               
               
               Cow position:chr8:47752124-47751980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr8:47861142-47861005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-194
               
               
               Cow position:chr8:25083064-25083215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-200
               
               
               Cow position:chr8:4559261-4559117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-201
               
               
               Cow position:chr8:33584956-33585105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-207
               
               
               Cow position:chr8:46799508-46799345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-214
               
               
               Cow position:chr8:43795021-43795191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-222
               
               
               Cow position:chr8:29917559-29917384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 98

               
               
               Conread position:56-226
               
               
               Cow position:chr8:52308931-52308748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr8:53451307-53451485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-234
               
               
               Cow position:chr8:51493236-51493043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:56-263
               
               
               Cow position:chr8:21826955-21826735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-263
               
               
               Cow position:chr8:54305878-54306093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-269
               
               
               Cow position:chr8:35966239-35966008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-272
               
               
               Cow position:chr8:36465000-36465229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 193

               
               
               Conread position:56-274
               
               
               Cow position:chr8:20384582-20384805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):70, 25

               
               
               Conread position:56-274
               
               
               Cow position:chr8:22103387-22103160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:56-274
               
               
               Cow position:chr8:28884621-28884849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):44, 184

               
               
               Conread position:56-275
               
               
               Cow position:chr8:37147914-37148148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-276
               
               
               Cow position:chr8:1834716-1834948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-276
               
               
               Cow position:chr8:19224007-19223767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 193

               
               
               Conread position:56-276
               
               
               Cow position:chr8:24364147-24363913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-277
               
               
               Cow position:chr8:47678317-47678541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-278
               
               
               Cow position:chr8:39475234-39475471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 222

               
               
               Conread position:56-279
               
               
               Cow position:chr8:4821431-4821198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-279
               
               
               Cow position:chr8:32295944-32295698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-280
               
               
               Cow position:chr8:6233103-6232865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:56-280
               
               
               Cow position:chr8:19998288-19998053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 183

               
               
               Conread position:56-280
               
               
               Cow position:chr8:44437563-44437793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-281
               
               
               Cow position:chr8:43986417-43986181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:56-286
               
               
               Cow position:chr8:8010698-8010939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 238

               
               
               Conread position:56-286
               
               
               Cow position:chr8:28412817-28412576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-286
               
               
               Cow position:chr8:42607477-42607243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-286
               
               
               Cow position:chr8:45781866-45781630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:56-286
               
               
               Cow position:chr8:53485501-53485735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:56-286
               
               
               Cow position:chr8:59438489-59438244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):44, 242

               
               
               Conread position:56-287
               
               
               Cow position:chr8:36606085-36606316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:56-287
               
               
               Cow position:chr8:41627326-41627078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-287
               
               
               Cow position:chr8:47890057-47890294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:56-287
               
               
               Cow position:chr8:48775610-48775857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 203

               
               
               Conread position:56-287
               
               
               Cow position:chr8:59642706-59642457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-288
               
               
               Cow position:chr8:9942733-9942486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-288
               
               
               Cow position:chr8:28509697-28509444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:56-288
               
               
               Cow position:chr8:45493675-45493918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 179

               
               
               Conread position:56-291
               
               
               Cow position:chr8:26228752-26228996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 236

               
               
               Conread position:56-291
               
               
               Cow position:chr8:31763021-31762780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-292
               
               
               Cow position:chr8:38464808-38465042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:56-314
               
               
               Cow position:chr8:10942940-10942672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):40, 133

               
               
               Conread position:56-314
               
               
               Cow position:chr8:39181978-39181695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-332
               
               
               Cow position:chr8:31775978-31776284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-335
               
               
               Cow position:chr8:5225242-5224949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-335
               
               
               Cow position:chr8:33400399-33400116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-337
               
               
               Cow position:chr8:7064480-7064189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:56-337
               
               
               Cow position:chr8:20683767-20684070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-337
               
               
               Cow position:chr8:30135711-30136013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-337
               
               
               Cow position:chr8:34287721-34288022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:56-337
               
               
               Cow position:chr8:43227791-43228071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):230, 42

               
               
               Conread position:56-337
               
               
               Cow position:chr8:53429565-53429873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-338
               
               
               Cow position:chr8:24329052-24328756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:56-340
               
               
               Cow position:chr8:22755816-22756121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-341
               
               
               Cow position:chr8:20306778-20307077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:56-341
               
               
               Cow position:chr8:38780505-38780808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-342
               
               
               Cow position:chr8:24471442-24471763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:56-344
               
               
               Cow position:chr8:6724545-6724240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:56-344
               
               
               Cow position:chr8:8324066-8323765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-344
               
               
               Cow position:chr8:30324122-30324428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-344
               
               
               Cow position:chr8:38572485-38572164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-345
               
               
               Cow position:chr8:4796578-4796863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:56-345
               
               
               Cow position:chr8:32988540-32988847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-345
               
               
               Cow position:chr8:53642628-53642326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-345
               
               
               Cow position:chr8:60320318-60320623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-346
               
               
               Cow position:chr8:554391-554078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-346
               
               
               Cow position:chr8:20657543-20657255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):226, 52

               
               
               Conread position:56-346
               
               
               Cow position:chr8:31646212-31645915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:56-346
               
               
               Cow position:chr8:32621202-32620876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:56-346
               
               
               Cow position:chr8:46235494-46235802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-347
               
               
               Cow position:chr8:10081722-10082010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr8:18081331-18081641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 169

               
               
               Conread position:56-347
               
               
               Cow position:chr8:20892156-20892441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):205, 28

               
               
               Conread position:56-347
               
               
               Cow position:chr8:37122766-37123073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:56-348
               
               
               Cow position:chr8:47665111-47664798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-348
               
               
               Cow position:chr8:56886118-56886418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-349
               
               
               Cow position:chr8:17046967-17046653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-349
               
               
               Cow position:chr8:26922433-26922732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:56-349
               
               
               Cow position:chr8:48763355-48763656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 146

               
               
               Conread position:56-350
               
               
               Cow position:chr8:225570-225271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-350
               
               
               Cow position:chr8:538121-537803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 312

               
               
               Conread position:56-350
               
               
               Cow position:chr8:948337-948643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr8:1114997-1114702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):97, 166

               
               
               Conread position:56-350
               
               
               Cow position:chr8:1187725-1188027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:56-350
               
               
               Cow position:chr8:1394020-1394343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr8:2774580-2774897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr8:2865701-2866013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:56-350
               
               
               Cow position:chr8:3891631-3891315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:56-350
               
               
               Cow position:chr8:6087845-6088117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):260, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr8:7610132-7609824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:56-350
               
               
               Cow position:chr8:9681607-9681305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:56-350
               
               
               Cow position:chr8:10337233-10336927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr8:11078665-11078970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:56-350
               
               
               Cow position:chr8:11606129-11606437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr8:17180230-17179925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr8:19642265-19642578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-350
               
               
               Cow position:chr8:20157966-20157649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:56-350
               
               
               Cow position:chr8:20339080-20339386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 170

               
               
               Conread position:56-350
               
               
               Cow position:chr8:20926842-20926521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr8:21077389-21077694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 64

               
               
               Conread position:56-350
               
               
               Cow position:chr8:21212609-21212899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-350
               
               
               Cow position:chr8:21382900-21382580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr8:22273651-22273970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-350
               
               
               Cow position:chr8:23030230-23030528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:56-350
               
               
               Cow position:chr8:24371921-24371605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 268

               
               
               Conread position:56-350
               
               
               Cow position:chr8:24513343-24513037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:56-350
               
               
               Cow position:chr8:25349503-25349823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr8:25455199-25455516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr8:26625669-26625978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:56-350
               
               
               Cow position:chr8:26651100-26651400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):134, 42

               
               
               Conread position:56-350
               
               
               Cow position:chr8:28229677-28229363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:56-350
               
               
               Cow position:chr8:29262578-29262889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr8:29625167-29624858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-350
               
               
               Cow position:chr8:29765050-29765375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 319

               
               
               Conread position:56-350
               
               
               Cow position:chr8:35504441-35504124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr8:35580839-35580524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr8:35971639-35971960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-350
               
               
               Cow position:chr8:35990841-35991161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-350
               
               
               Cow position:chr8:36249626-36249308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 305

               
               
               Conread position:56-350
               
               
               Cow position:chr8:36375717-36375405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr8:38681673-38681989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr8:42113007-42112714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr8:42762632-42762320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr8:42794518-42794211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr8:45127906-45127592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:56-350
               
               
               Cow position:chr8:45245223-45244921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:56-350
               
               
               Cow position:chr8:48513212-48512903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-350
               
               
               Cow position:chr8:50311050-50310741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr8:51905250-51904928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chr8:53229828-53230133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr8:53383199-53383514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:56-350
               
               
               Cow position:chr8:54031672-54031989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:56-350
               
               
               Cow position:chr8:55716550-55716863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 140

               
               
               Conread position:56-351
               
               
               Cow position:chr8:2164112-2163793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-351
               
               
               Cow position:chr8:5979737-5980054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:56-351
               
               
               Cow position:chr8:15569666-15569371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:56-351
               
               
               Cow position:chr8:17103625-17103315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:56-351
               
               
               Cow position:chr8:38596417-38596113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:56-352
               
               
               Cow position:chr8:669771-669452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):115, 206

               
               
               Conread position:56-353
               
               
               Cow position:chr8:32093677-32093987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-353
               
               
               Cow position:chr8:38358220-38358529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-354
               
               
               Cow position:chr8:18049397-18049708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:56-355
               
               
               Cow position:chr8:4924359-4924683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:56-355
               
               
               Cow position:chr8:24498043-24498358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 194

               
               
               Conread position:56-355
               
               
               Cow position:chr8:38357055-38356741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-356
               
               
               Cow position:chr8:47342529-47342852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:56-357
               
               
               Cow position:chr8:9705402-9705719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-359
               
               
               Cow position:chr8:1303700-1304026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-361
               
               
               Cow position:chr8:60488831-60488508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-363
               
               
               Cow position:chr8:23026498-23026809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:56-364
               
               
               Cow position:chr8:10970622-10970959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:56-365
               
               
               Cow position:chr8:15395060-15394734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-366
               
               
               Cow position:chr8:58417484-58417811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-367
               
               
               Cow position:chr8:11612342-11612677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-367
               
               
               Cow position:chr8:17199643-17199303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:56-367
               
               
               Cow position:chr8:30245034-30244720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:56-367
               
               
               Cow position:chr8:39144557-39144863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-367
               
               
               Cow position:chr8:42145979-42145646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-367
               
               
               Cow position:chr8:53558808-53558481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 53

               
               
               Conread position:56-369
               
               
               Cow position:chr8:18017307-18017647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:56-371
               
               
               Cow position:chr8:37571912-37571573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:56-399
               
               
               Cow position:chr8:60746438-60746799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:57-259
               
               
               Cow position:chr8:11217273-11217052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 191

               
               
               Conread position:57-273
               
               
               Cow position:chr8:844145-843935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:57-280
               
               
               Cow position:chr8:2814415-2814655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-285
               
               
               Cow position:chr8:9517385-9517139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 244

               
               
               Conread position:57-286
               
               
               Cow position:chr8:30418837-30419079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 239

               
               
               Conread position:57-288
               
               
               Cow position:chr8:6816878-6816631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 196

               
               
               Conread position:57-314
               
               
               Cow position:chr8:31253607-31253881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-314
               
               
               Cow position:chr8:57208684-57208404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-332
               
               
               Cow position:chr8:9641149-9641448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 272

               
               
               Conread position:57-346
               
               
               Cow position:chr8:6531213-6531522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:57-350
               
               
               Cow position:chr8:4940514-4940209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:57-350
               
               
               Cow position:chr8:12795610-12795934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 202

               
               
               Conread position:57-350
               
               
               Cow position:chr8:20836923-20837231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:57-350
               
               
               Cow position:chr8:24872074-24871774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:57-350
               
               
               Cow position:chr8:31297064-31297383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:57-350
               
               
               Cow position:chr8:33586007-33586324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:57-350
               
               
               Cow position:chr8:59250521-59250840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:57-364
               
               
               Cow position:chr8:34477911-34478222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-369
               
               
               Cow position:chr8:8668402-8668056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:58-182
               
               
               Cow position:chr8:21268726-21268600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:58-191
               
               
               Cow position:chr8:46743538-46743402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:58-279
               
               
               Cow position:chr8:24952137-24952378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-288
               
               
               Cow position:chr8:17669946-17669699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-344
               
               
               Cow position:chr8:45486406-45486701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:58-347
               
               
               Cow position:chr8:9131130-9130820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:58-347
               
               
               Cow position:chr8:28221771-28221460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 302

               
               
               Conread position:58-347
               
               
               Cow position:chr8:29958224-29958506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:58-347
               
               
               Cow position:chr8:61538047-61537738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:58-349
               
               
               Cow position:chr8:46203081-46203374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:58-350
               
               
               Cow position:chr8:4500286-4500603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:58-350
               
               
               Cow position:chr8:11278318-11277995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:58-350
               
               
               Cow position:chr8:18730233-18730557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 201

               
               
               Conread position:58-350
               
               
               Cow position:chr8:47136215-47135905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:58-350
               
               
               Cow position:chr8:51579064-51579364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:58-352
               
               
               Cow position:chr8:9315707-9316015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-352
               
               
               Cow position:chr8:46480072-46479771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:59-217
               
               
               Cow position:chr8:31266389-31266219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:59-285
               
               
               Cow position:chr8:20111908-20112149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 193

               
               
               Conread position:59-336
               
               
               Cow position:chr8:50266093-50266386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:59-344
               
               
               Cow position:chr8:20102974-20102673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:59-348
               
               
               Cow position:chr8:12058510-12058830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 286

               
               
               Conread position:59-350
               
               
               Cow position:chr8:35828009-35827694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 199

               
               
               Conread position:59-350
               
               
               Cow position:chr8:38861899-38861591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:60-182
               
               
               Cow position:chr8:54269208-54269086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:60-343
               
               
               Cow position:chr8:8097468-8097163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:60-346
               
               
               Cow position:chr8:23179749-23179438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:60-350
               
               
               Cow position:chr8:33407049-33406735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:61-330
               
               
               Cow position:chr8:1472861-1473154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:61-344
               
               
               Cow position:chr8:1011776-1012083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:61-346
               
               
               Cow position:chr8:25628148-25628454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:61-350
               
               
               Cow position:chr8:15391355-15391048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:61-360
               
               
               Cow position:chr8:10263366-10263043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:61-367
               
               
               Cow position:chr8:61841784-61842093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:62-276
               
               
               Cow position:chr8:39555778-39556010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:62-314
               
               
               Cow position:chr8:10297938-10297663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:62-351
               
               
               Cow position:chr8:60454996-60455299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:62-364
               
               
               Cow position:chr8:48528157-48527835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:63-337
               
               
               Cow position:chr8:27138987-27138697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 90

               
               
               Conread position:63-344
               
               
               Cow position:chr8:54302837-54303130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:63-350
               
               
               Cow position:chr8:26304600-26304280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 194

               
               
               Conread position:64-350
               
               
               Cow position:chr8:37298278-37298587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 178

               
               
               Conread position:65-286
               
               
               Cow position:chr8:39544578-39544819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:70-273
               
               
               Cow position:chr8:55726461-55726264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:70-278
               
               
               Cow position:chr8:30463201-30463421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:70-350
               
               
               Cow position:chr8:10400116-10400409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:70-350
               
               
               Cow position:chr8:39174441-39174131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:71-288
               
               
               Cow position:chr8:37173263-37173034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 224

               
               
               Conread position:72-185
               
               
               Cow position:chr8:53664976-53665097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:73-350
               
               
               Cow position:chr8:18869699-18869991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:73-350
               
               
               Cow position:chr8:50315354-50315078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:74-342
               
               
               Cow position:chr8:61128893-61128594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 180

               
               
               Conread position:74-367
               
               
               Cow position:chr8:21222010-21222319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):25, 154

               
               
               Conread position:75-288
               
               
               Cow position:chr8:30893186-30892967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:77-350
               
               
               Cow position:chr8:19011974-19011684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):104, 45

               
               
               Conread position:80-364
               
               
               Cow position:chr8:5893762-5894066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:81-350
               
               
               Cow position:chr8:6951347-6951636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:81-350
               
               
               Cow position:chr8:47284244-47283960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):18, 170

               
               
               Conread position:81-364
               
               
               Cow position:chr8:43439426-43439738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:82-286
               
               
               Cow position:chr8:21083466-21083255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:85-350
               
               
               Cow position:chr8:20783441-20783154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):14, 281

               
               
               Conread position:86-265
               
               
               Cow position:chr8:3655418-3655606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-350
               
               
               Cow position:chr8:45287453-45287188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:87-192
               
               
               Cow position:chr8:8752164-8752276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:87-346
               
               
               Cow position:chr8:1169451-1169181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:89-350
               
               
               Cow position:chr8:23586124-23585849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:92-350
               
               
               Cow position:chr8:40280520-40280793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:94-287
               
               
               Cow position:chr8:38993340-38993531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):127, 47

               
               
               Conread position:95-337
               
               
               Cow position:chr8:51695539-51695287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:95-347
               
               
               Cow position:chr8:39807431-39807707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:96-280
               
               
               Cow position:chr8:48422657-48422847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:96-347
               
               
               Cow position:chr8:13222012-13221746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:96-350
               
               
               Cow position:chr8:43113000-43112735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:98-282
               
               
               Cow position:chr8:44882783-44882980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):28, 161

               
               
               Conread position:98-350
               
               
               Cow position:chr8:16507951-16507679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:98-350
               
               
               Cow position:chr8:39845460-39845725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):27, 139

               
               
               Conread position:100-347
               
               
               Cow position:chr8:43027816-43027549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:100-350
               
               
               Cow position:chr8:37882186-37882455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):58, 140

               
               
               Conread position:100-350
               
               
               Cow position:chr8:41905777-41905520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:100-350
               
               
               Cow position:chr8:41914685-41914428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:100-350
               
               
               Cow position:chr8:57218639-57218912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):26, 151

               
               
               Conread position:100-351
               
               
               Cow position:chr8:58520130-58520405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:101-350
               
               
               Cow position:chr8:37347615-37347344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:101-350
               
               
               Cow position:chr8:55897964-55897702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:102-346
               
               
               Cow position:chr8:35519871-35520140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:103-349
               
               
               Cow position:chr8:27730885-27731146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:103-350
               
               
               Cow position:chr8:6073969-6073705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:104-352
               
               
               Cow position:chr8:19717251-19716998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:105-302
               
               
               Cow position:chr8:36741313-36741118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 126

               
               
               Conread position:106-351
               
               
               Cow position:chr8:53948570-53948314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:108-269
               
               
               Cow position:chr8:10832777-10832624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:108-288
               
               
               Cow position:chr8:26008728-26008920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:109-280
               
               
               Cow position:chr8:16653268-16653446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:109-288
               
               
               Cow position:chr8:11135409-11135224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:110-280
               
               
               Cow position:chr8:5450757-5450569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:110-364
               
               
               Cow position:chr8:33125357-33125618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 131

               
               
               Conread position:111-346
               
               
               Cow position:chr8:55884823-55885080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:111-350
               
               
               Cow position:chr8:3673228-3673478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:111-350
               
               
               Cow position:chr8:37862433-37862682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:113-346
               
               
               Cow position:chr8:38711454-38711700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:115-337
               
               
               Cow position:chr8:1936704-1936945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):63, 125

               
               
               Conread position:119-350
               
               
               Cow position:chr8:45447240-45446990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:120-347
               
               
               Cow position:chr8:29026773-29026529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):38, 119

               
               
               Conread position:121-344
               
               
               Cow position:chr8:33814849-33815082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:122-280
               
               
               Cow position:chr8:51480965-51480800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:123-288
               
               
               Cow position:chr8:5515577-5515749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:123-342
               
               
               Cow position:chr8:16413944-16413711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):58, 104

               
               
               Conread position:123-342
               
               
               Cow position:chr8:37391491-37391251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:123-350
               
               
               Cow position:chr8:11927017-11927239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:123-350
               
               
               Cow position:chr8:16060954-16061179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:123-350
               
               
               Cow position:chr8:25388008-25388249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:123-350
               
               
               Cow position:chr8:40143988-40143742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:123-364
               
               
               Cow position:chr8:12798798-12799046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:125-347
               
               
               Cow position:chr8:18207266-18207035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:125-350
               
               
               Cow position:chr8:37334040-37334276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:128-350
               
               
               Cow position:chr8:12779015-12778780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:130-344
               
               
               Cow position:chr8:35211050-35210828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:132-350
               
               
               Cow position:chr8:19698524-19698751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):26, 95

               
               
               Conread position:135-350
               
               
               Cow position:chr8:28228125-28228355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 93

               
               
               Conread position:144-350
               
               
               Cow position:chr8:19204558-19204336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 216

               
               
               Conread position:145-330
               
               
               Cow position:chr8:41722295-41722098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:151-343
               
               
               Cow position:chr8:30419269-30419456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):167, 22

               
               
               Conread position:151-350
               
               
               Cow position:chr8:55095776-55095979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:153-350
               
               
               Cow position:chr8:46743415-46743205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:171-351
               
               
               Cow position:chr8:50335603-50335413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:173-350
               
               
               Cow position:chr8:25751949-25751763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:177-347
               
               
               Cow position:chr8:39969893-39969713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:180-350
               
               
               Cow position:chr8:49305818-49305639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):64, 53

               
               
               Conread position:184-350
               
               
               Cow position:chr8:43163768-43163592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:186-346
               
               
               Cow position:chr8:17232425-17232254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:186-347
               
               
               Cow position:chr8:37709088-37709258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:186-350
               
               
               Cow position:chr8:17167504-17167680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:186-350
               
               
               Cow position:chr8:36671853-36672029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:186-364
               
               
               Cow position:chr8:21911576-21911763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):97, 42

               
               
               Conread position:186-364
               
               
               Cow position:chr8:34774436-34774622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 60

               
               
               Conread position:186-366
               
               
               Cow position:chr8:40579474-40579287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:187-350
               
               
               Cow position:chr8:16505432-16505601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 164

               
               
               Conread position:188-364
               
               
               Cow position:chr8:49656486-49656304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:189-350
               
               
               Cow position:chr8:4525025-4525192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:189-353
               
               
               Cow position:chr8:34042393-34042566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):91, 44

               
               
               Conread position:190-350
               
               
               Cow position:chr8:47500743-47500916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:190-351
               
               
               Cow position:chr8:49659072-49659240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):88, 39

               
               
               Conread position:191-350
               
               
               Cow position:chr8:19860716-19860558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:200-364
               
               
               Cow position:chr8:18647410-18647237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:237-350
               
               
               Cow position:chr8:35497692-35497572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:32-350
               
               
               Cow position:chr9:388745-389086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):24, 190

               
               
               Conread position:34-350
               
               
               Cow position:chr9:61544918-61544591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 114

               
               
               Conread position:48-350
               
               
               Cow position:chr9:50139535-50139214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:49-277
               
               
               Cow position:chr9:40604202-40603957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 201

               
               
               Conread position:49-350
               
               
               Cow position:chr9:1729424-1729744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):50, 166

               
               
               Conread position:52-308
               
               
               Cow position:chr9:9416159-9416423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):73, 5

               
               
               Conread position:53-347
               
               
               Cow position:chr9:62657039-62656735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):120, 5

               
               
               Conread position:54-353
               
               
               Cow position:chr9:41513866-41513558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:55-182
               
               
               Cow position:chr9:8563087-8562953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:55-238
               
               
               Cow position:chr9:5621784-5621985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:55-249
               
               
               Cow position:chr9:42998225-42998431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:55-276
               
               
               Cow position:chr9:26434821-26435041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):131, 41

               
               
               Conread position:55-288
               
               
               Cow position:chr9:9200479-9200723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:55-288
               
               
               Cow position:chr9:18162909-18163159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-343
               
               
               Cow position:chr9:7634513-7634207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):131, 54

               
               
               Conread position:55-344
               
               
               Cow position:chr9:37069323-37069624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):44, 232

               
               
               Conread position:55-345
               
               
               Cow position:chr9:5501097-5500787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:55-345
               
               
               Cow position:chr9:9624782-9625076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:55-346
               
               
               Cow position:chr9:28948098-28947795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:55-347
               
               
               Cow position:chr9:23043021-23042710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:55-348
               
               
               Cow position:chr9:7410028-7409695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):44, 330

               
               
               Conread position:55-350
               
               
               Cow position:chr9:3379362-3379072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:55-350
               
               
               Cow position:chr9:10308761-10309067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:55-350
               
               
               Cow position:chr9:20406884-20406585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:55-350
               
               
               Cow position:chr9:20579374-20579665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):131, 39

               
               
               Conread position:55-350
               
               
               Cow position:chr9:22443365-22443697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 206

               
               
               Conread position:55-350
               
               
               Cow position:chr9:34957805-34958127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-350
               
               
               Cow position:chr9:44914849-44915168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):133, 44

               
               
               Conread position:55-350
               
               
               Cow position:chr9:54677468-54677193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):216, 36

               
               
               Conread position:55-351
               
               
               Cow position:chr9:5509970-5509653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:55-351
               
               
               Cow position:chr9:30138372-30138050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 97

               
               
               Conread position:55-358
               
               
               Cow position:chr9:50606707-50607024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 58

               
               
               Conread position:55-364
               
               
               Cow position:chr9:30402174-30402513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):83, 44

               
               
               Conread position:55-364
               
               
               Cow position:chr9:55256303-55256639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:55-367
               
               
               Cow position:chr9:29184887-29185227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-149
               
               
               Cow position:chr9:36844077-36843983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-154
               
               
               Cow position:chr9:36354037-36354135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:56-182
               
               
               Cow position:chr9:10877621-10877756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr9:13994433-13994299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr9:37141473-37141346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-189
               
               
               Cow position:chr9:18008622-18008755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-190
               
               
               Cow position:chr9:31077433-31077573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-194
               
               
               Cow position:chr9:41416596-41416453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-195
               
               
               Cow position:chr9:42585381-42585523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-212
               
               
               Cow position:chr9:26577615-26577779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):41, 52

               
               
               Conread position:56-216
               
               
               Cow position:chr9:8546563-8546392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-218
               
               
               Cow position:chr9:3924861-3924696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-220
               
               
               Cow position:chr9:38875329-38875509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-226
               
               
               Cow position:chr9:41995959-41995771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-237
               
               
               Cow position:chr9:9491038-9490844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 48

               
               
               Conread position:56-240
               
               
               Cow position:chr9:22227841-22228035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:56-247
               
               
               Cow position:chr9:16218398-16218607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:56-250
               
               
               Cow position:chr9:30664533-30664741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:56-262
               
               
               Cow position:chr9:4928876-4928653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-266
               
               
               Cow position:chr9:31626394-31626171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-266
               
               
               Cow position:chr9:35305875-35306095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:56-267
               
               
               Cow position:chr9:27697485-27697702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:56-267
               
               
               Cow position:chr9:32812593-32812371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-273
               
               
               Cow position:chr9:34000371-34000604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-273
               
               
               Cow position:chr9:36999816-37000045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-274
               
               
               Cow position:chr9:12356101-12355868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 197

               
               
               Conread position:56-274
               
               
               Cow position:chr9:36827370-36827150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:56-276
               
               
               Cow position:chr9:23028039-23027817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:56-276
               
               
               Cow position:chr9:53602658-53602440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:56-276
               
               
               Cow position:chr9:64516851-64517088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-278
               
               
               Cow position:chr9:20738947-20738707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-279
               
               
               Cow position:chr9:21840320-21840082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-279
               
               
               Cow position:chr9:26391013-26390779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-280
               
               
               Cow position:chr9:3411015-3410790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:56-280
               
               
               Cow position:chr9:22361260-22361019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-280
               
               
               Cow position:chr9:25546879-25546649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:56-280
               
               
               Cow position:chr9:29034794-29035027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:56-280
               
               
               Cow position:chr9:34742483-34742715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:56-281
               
               
               Cow position:chr9:1712240-1712468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 6

               
               
               Conread position:56-285
               
               
               Cow position:chr9:48118457-48118685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:56-286
               
               
               Cow position:chr9:5399964-5399740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:56-286
               
               
               Cow position:chr9:5532198-5531946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 249

               
               
               Conread position:56-286
               
               
               Cow position:chr9:22318583-22318354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-286
               
               
               Cow position:chr9:24997271-24997515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-286
               
               
               Cow position:chr9:25958659-25958421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-286
               
               
               Cow position:chr9:34919021-34919256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:56-286
               
               
               Cow position:chr9:35359857-35360100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:56-286
               
               
               Cow position:chr9:35850144-35849908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-286
               
               
               Cow position:chr9:61997350-61997594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 241

               
               
               Conread position:56-287
               
               
               Cow position:chr9:22638345-22638104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 59

               
               
               Conread position:56-287
               
               
               Cow position:chr9:30749340-30749587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 214

               
               
               Conread position:56-288
               
               
               Cow position:chr9:33681929-33681675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:56-288
               
               
               Cow position:chr9:35533706-35533952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-288
               
               
               Cow position:chr9:52724971-52725216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-290
               
               
               Cow position:chr9:20989209-20989450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:56-291
               
               
               Cow position:chr9:8868891-8869145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:56-291
               
               
               Cow position:chr9:20900885-20901125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:56-291
               
               
               Cow position:chr9:29108782-29108534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-291
               
               
               Cow position:chr9:42498074-42497826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-293
               
               
               Cow position:chr9:54997778-54998033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:56-298
               
               
               Cow position:chr9:57951084-57951330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:56-309
               
               
               Cow position:chr9:24726433-24726694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-320
               
               
               Cow position:chr9:41789523-41789243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 10

               
               
               Conread position:56-320
               
               
               Cow position:chr9:49764901-49764620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:56-320
               
               
               Cow position:chr9:54610986-54611260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 167

               
               
               Conread position:56-326
               
               
               Cow position:chr9:35904506-35904792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:56-327
               
               
               Cow position:chr9:35375669-35375378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:56-330
               
               
               Cow position:chr9:47906044-47906333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:56-330
               
               
               Cow position:chr9:58979646-58979350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-333
               
               
               Cow position:chr9:5161821-5162104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-333
               
               
               Cow position:chr9:19637393-19637682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:56-333
               
               
               Cow position:chr9:23541173-23541445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):142, 37

               
               
               Conread position:56-335
               
               
               Cow position:chr9:6089342-6089033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:56-336
               
               
               Cow position:chr9:19714314-19714023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:56-336
               
               
               Cow position:chr9:52407415-52407107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 299

               
               
               Conread position:56-337
               
               
               Cow position:chr9:5433880-5433574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-337
               
               
               Cow position:chr9:29841132-29840842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-342
               
               
               Cow position:chr9:5209829-5209517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:56-343
               
               
               Cow position:chr9:5218934-5219236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-343
               
               
               Cow position:chr9:43037728-43037418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:56-343
               
               
               Cow position:chr9:44108585-44108896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:56-344
               
               
               Cow position:chr9:1950164-1949852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:56-344
               
               
               Cow position:chr9:6933827-6934138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:56-344
               
               
               Cow position:chr9:18216855-18217164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-344
               
               
               Cow position:chr9:25922068-25921758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:56-344
               
               
               Cow position:chr9:59386532-59386834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:56-344
               
               
               Cow position:chr9:62400199-62399897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 158

               
               
               Conread position:56-345
               
               
               Cow position:chr9:9516525-9516819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:56-345
               
               
               Cow position:chr9:9823275-9823572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:56-345
               
               
               Cow position:chr9:59795035-59795353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:56-346
               
               
               Cow position:chr9:3070178-3070476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-346
               
               
               Cow position:chr9:3220368-3220069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):103, 69

               
               
               Conread position:56-346
               
               
               Cow position:chr9:5319874-5319555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:56-346
               
               
               Cow position:chr9:10144227-10144542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-346
               
               
               Cow position:chr9:20416264-20416573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:56-346
               
               
               Cow position:chr9:23430897-23431214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-346
               
               
               Cow position:chr9:32732441-32732746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 223

               
               
               Conread position:56-346
               
               
               Cow position:chr9:34468348-34468646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-346
               
               
               Cow position:chr9:54528760-54528447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:56-347
               
               
               Cow position:chr9:9552332-9552022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr9:20961043-20961328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-347
               
               
               Cow position:chr9:31347199-31346882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chr9:35101112-35100822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:56-348
               
               
               Cow position:chr9:10011045-10010747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-349
               
               
               Cow position:chr9:214217-214529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:56-350
               
               
               Cow position:chr9:1751579-1751267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr9:5246094-5245782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr9:5327499-5327187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:56-350
               
               
               Cow position:chr9:5594745-5594432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):47, 183

               
               
               Conread position:56-350
               
               
               Cow position:chr9:5756758-5757059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr9:5763385-5763701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr9:6192214-6192531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr9:7363272-7362958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:56-350
               
               
               Cow position:chr9:8338275-8337956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chr9:9199539-9199850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-350
               
               
               Cow position:chr9:9595709-9596023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:56-350
               
               
               Cow position:chr9:9753150-9753461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chr9:13169423-13169734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:56-350
               
               
               Cow position:chr9:13670881-13670562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-350
               
               
               Cow position:chr9:15215436-15215757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-350
               
               
               Cow position:chr9:15805676-15805993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:56-350
               
               
               Cow position:chr9:17310317-17310632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):96, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr9:20848181-20847864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-350
               
               
               Cow position:chr9:22696462-22696153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:56-350
               
               
               Cow position:chr9:23388433-23388743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr9:24887445-24887135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr9:26086312-26085987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr9:26278928-26279240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 175

               
               
               Conread position:56-350
               
               
               Cow position:chr9:26344739-26345039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):126, 66

               
               
               Conread position:56-350
               
               
               Cow position:chr9:26404034-26403715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-350
               
               
               Cow position:chr9:28773362-28773068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr9:31078837-31079151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:56-350
               
               
               Cow position:chr9:33119637-33119959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chr9:34697050-34697369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:56-350
               
               
               Cow position:chr9:34901870-34902172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 178

               
               
               Conread position:56-350
               
               
               Cow position:chr9:35167413-35167105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-350
               
               
               Cow position:chr9:36445867-36445549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:56-350
               
               
               Cow position:chr9:37017129-37016829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:56-350
               
               
               Cow position:chr9:38846104-38846404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 139

               
               
               Conread position:56-350
               
               
               Cow position:chr9:38961193-38961499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chr9:40542359-40542065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:56-350
               
               
               Cow position:chr9:41283271-41282945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:56-350
               
               
               Cow position:chr9:41679980-41679676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:56-350
               
               
               Cow position:chr9:43871217-43870904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:56-350
               
               
               Cow position:chr9:47869252-47868945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 162

               
               
               Conread position:56-350
               
               
               Cow position:chr9:50076311-50075994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-350
               
               
               Cow position:chr9:55074890-55075199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-350
               
               
               Cow position:chr9:55084052-55084372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-350
               
               
               Cow position:chr9:55118323-55118016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:56-350
               
               
               Cow position:chr9:61739162-61738851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:56-350
               
               
               Cow position:chr9:61846905-61847195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:56-350
               
               
               Cow position:chr9:62442527-62442219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:56-350
               
               
               Cow position:chr9:63746049-63745745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:56-350
               
               
               Cow position:chr9:64050310-64050631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 169

               
               
               Conread position:56-350
               
               
               Cow position:chr9:64155611-64155922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:56-351
               
               
               Cow position:chr9:8998600-8998278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:56-351
               
               
               Cow position:chr9:33940852-33940533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:56-351
               
               
               Cow position:chr9:54681747-54681437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:56-351
               
               
               Cow position:chr9:55890054-55889742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):47, 184

               
               
               Conread position:56-352
               
               
               Cow position:chr9:5226919-5227248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 181

               
               
               Conread position:56-352
               
               
               Cow position:chr9:5393296-5392996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 115

               
               
               Conread position:56-352
               
               
               Cow position:chr9:39577979-39577667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-352
               
               
               Cow position:chr9:64559642-64559955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 182

               
               
               Conread position:56-353
               
               
               Cow position:chr9:8534438-8534764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-353
               
               
               Cow position:chr9:17871862-17872184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-353
               
               
               Cow position:chr9:32371515-32371825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:56-363
               
               
               Cow position:chr9:33598226-33597902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-364
               
               
               Cow position:chr9:9443352-9443688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-364
               
               
               Cow position:chr9:33100895-33101201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-364
               
               
               Cow position:chr9:55287646-55287976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:56-364
               
               
               Cow position:chr9:58133777-58134089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 185

               
               
               Conread position:56-366
               
               
               Cow position:chr9:19903297-19902996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):221, 34

               
               
               Conread position:56-366
               
               
               Cow position:chr9:44467104-44467426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-366
               
               
               Cow position:chr9:56032083-56032402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:56-367
               
               
               Cow position:chr9:22151842-22152175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:57-182
               
               
               Cow position:chr9:17785217-17785346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-236
               
               
               Cow position:chr9:36623208-36623392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 58

               
               
               Conread position:57-269
               
               
               Cow position:chr9:18002705-18002934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:57-281
               
               
               Cow position:chr9:49983448-49983681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-285
               
               
               Cow position:chr9:29092048-29091797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 249

               
               
               Conread position:57-286
               
               
               Cow position:chr9:6225208-6225451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 240

               
               
               Conread position:57-287
               
               
               Cow position:chr9:4128540-4128779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:57-310
               
               
               Cow position:chr9:38344138-38343860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-327
               
               
               Cow position:chr9:22114389-22114683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:57-337
               
               
               Cow position:chr9:32676930-32676619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):42, 193

               
               
               Conread position:57-344
               
               
               Cow position:chr9:49710088-49709782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):42, 171

               
               
               Conread position:57-346
               
               
               Cow position:chr9:36490651-36490968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:57-347
               
               
               Cow position:chr9:21888413-21888102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:57-350
               
               
               Cow position:chr9:9461411-9461725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 222

               
               
               Conread position:57-350
               
               
               Cow position:chr9:16300327-16300640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:57-350
               
               
               Cow position:chr9:17740700-17741012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:57-350
               
               
               Cow position:chr9:33823342-33823047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-350
               
               
               Cow position:chr9:34374685-34374995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:57-350
               
               
               Cow position:chr9:45285287-45285606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:57-364
               
               
               Cow position:chr9:29006804-29006471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):67, 82

               
               
               Conread position:57-364
               
               
               Cow position:chr9:42445738-42446069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:58-260
               
               
               Cow position:chr9:58439538-58439753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:58-286
               
               
               Cow position:chr9:1952026-1952266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:58-286
               
               
               Cow position:chr9:48106877-48107112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 183

               
               
               Conread position:58-307
               
               
               Cow position:chr9:10092150-10092411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:58-308
               
               
               Cow position:chr9:52484674-52484938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 198

               
               
               Conread position:58-342
               
               
               Cow position:chr9:4646085-4646388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):39, 183

               
               
               Conread position:58-349
               
               
               Cow position:chr9:19382566-19382262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:58-350
               
               
               Cow position:chr9:6840254-6839923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 326

               
               
               Conread position:58-350
               
               
               Cow position:chr9:6880013-6879708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 230

               
               
               Conread position:58-350
               
               
               Cow position:chr9:18252680-18252982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:58-350
               
               
               Cow position:chr9:32306993-32307302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:58-350
               
               
               Cow position:chr9:46316545-46316852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):45, 56

               
               
               Conread position:58-350
               
               
               Cow position:chr9:52001251-52000948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 200

               
               
               Conread position:58-366
               
               
               Cow position:chr9:9402942-9403266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:59-314
               
               
               Cow position:chr9:62134378-62134658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):51, 93

               
               
               Conread position:59-344
               
               
               Cow position:chr9:20091281-20090981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:59-350
               
               
               Cow position:chr9:3387933-3387636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):45, 237

               
               
               Conread position:59-353
               
               
               Cow position:chr9:51566244-51566568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:59-364
               
               
               Cow position:chr9:54716379-54716688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:60-350
               
               
               Cow position:chr9:50080805-50081111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:60-350
               
               
               Cow position:chr9:54206091-54206394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:60-350
               
               
               Cow position:chr9:56011738-56011428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):39, 183

               
               
               Conread position:61-344
               
               
               Cow position:chr9:8288857-8288553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:62-346
               
               
               Cow position:chr9:1520491-1520807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 187

               
               
               Conread position:62-347
               
               
               Cow position:chr9:29825275-29824962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:64-288
               
               
               Cow position:chr9:50702875-50703110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:64-350
               
               
               Cow position:chr9:44710062-44709759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):30, 162

               
               
               Conread position:66-341
               
               
               Cow position:chr9:28726488-28726787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:66-350
               
               
               Cow position:chr9:20321881-20322163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:67-272
               
               
               Cow position:chr9:50667658-50667438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:67-367
               
               
               Cow position:chr9:52619886-52619564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):32, 170

               
               
               Conread position:69-286
               
               
               Cow position:chr9:32711164-32710933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):21, 179

               
               
               Conread position:70-275
               
               
               Cow position:chr9:33038227-33038450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:70-350
               
               
               Cow position:chr9:4267749-4268053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:70-350
               
               
               Cow position:chr9:4580189-4580475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:74-320
               
               
               Cow position:chr9:1532105-1532356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:74-328
               
               
               Cow position:chr9:53211270-53211540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:74-346
               
               
               Cow position:chr9:30477557-30477841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:74-350
               
               
               Cow position:chr9:53762928-53762623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:76-286
               
               
               Cow position:chr9:1997363-1997141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:76-338
               
               
               Cow position:chr9:11313282-11313569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 173

               
               
               Conread position:76-350
               
               
               Cow position:chr9:35027948-35028235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:78-350
               
               
               Cow position:chr9:1973165-1972878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 164

               
               
               Conread position:81-276
               
               
               Cow position:chr9:1879596-1879393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):18, 160

               
               
               Conread position:81-344
               
               
               Cow position:chr9:17799850-17799563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 75

               
               
               Conread position:81-346
               
               
               Cow position:chr9:26057220-26057497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 162

               
               
               Conread position:81-350
               
               
               Cow position:chr9:28354738-28354447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:82-276
               
               
               Cow position:chr9:6117928-6118136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:83-266
               
               
               Cow position:chr9:11198124-11198320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:85-279
               
               
               Cow position:chr9:1938342-1938140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:85-280
               
               
               Cow position:chr9:30195429-30195223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:85-346
               
               
               Cow position:chr9:33093170-33092892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:85-350
               
               
               Cow position:chr9:43444011-43443733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:87-251
               
               
               Cow position:chr9:29578458-29578284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:88-350
               
               
               Cow position:chr9:48628244-48627957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 70

               
               
               Conread position:91-276
               
               
               Cow position:chr9:3847877-3847681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 150

               
               
               Conread position:94-343
               
               
               Cow position:chr9:8525042-8524795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:96-351
               
               
               Cow position:chr9:50543216-50543500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:97-346
               
               
               Cow position:chr9:32115412-32115666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 7

               
               
               Conread position:97-350
               
               
               Cow position:chr9:37678090-37677824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:97-363
               
               
               Cow position:chr9:11168932-11168645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):10, 146

               
               
               Conread position:98-286
               
               
               Cow position:chr9:25805036-25804836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:98-324
               
               
               Cow position:chr9:8920200-8919955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 213

               
               
               Conread position:98-350
               
               
               Cow position:chr9:30652506-30652779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:98-364
               
               
               Cow position:chr9:33237594-33237308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 237

               
               
               Conread position:100-344
               
               
               Cow position:chr9:15006555-15006813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 252

               
               
               Conread position:100-350
               
               
               Cow position:chr9:11123287-11123553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:100-350
               
               
               Cow position:chr9:19493263-19493537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):24, 54

               
               
               Conread position:100-351
               
               
               Cow position:chr9:9815613-9815342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:100-367
               
               
               Cow position:chr9:10650105-10650386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:102-341
               
               
               Cow position:chr9:62668450-62668186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:103-350
               
               
               Cow position:chr9:60027392-60027126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:104-347
               
               
               Cow position:chr9:55321829-55321569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:104-349
               
               
               Cow position:chr9:11364089-11363828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 243

               
               
               Conread position:104-356
               
               
               Cow position:chr9:49417183-49416910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:107-345
               
               
               Cow position:chr9:30124113-30123863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:108-344
               
               
               Cow position:chr9:24873020-24872771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:108-350
               
               
               Cow position:chr9:31557538-31557798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 241

               
               
               Conread position:109-286
               
               
               Cow position:chr9:1371123-1370932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):42, 135

               
               
               Conread position:113-350
               
               
               Cow position:chr9:12225800-12226047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:113-350
               
               
               Cow position:chr9:56065735-56065493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:123-288
               
               
               Cow position:chr9:31638467-31638643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:123-346
               
               
               Cow position:chr9:17518315-17518556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:123-350
               
               
               Cow position:chr9:8901050-8901297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:123-350
               
               
               Cow position:chr9:25557139-25556901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):116, 28

               
               
               Conread position:123-350
               
               
               Cow position:chr9:40215417-40215176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:124-350
               
               
               Cow position:chr9:47445854-47446085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:126-350
               
               
               Cow position:chr9:26477387-26477146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 111

               
               
               Conread position:126-350
               
               
               Cow position:chr9:39011306-39011540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:126-351
               
               
               Cow position:chr9:6851897-6852139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:128-350
               
               
               Cow position:chr9:51720733-51720968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):53, 104

               
               
               Conread position:129-350
               
               
               Cow position:chr9:12910234-12910472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:134-343
               
               
               Cow position:chr9:3774327-3774101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):25, 110

               
               
               Conread position:136-350
               
               
               Cow position:chr9:9312014-9311788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:136-364
               
               
               Cow position:chr9:11303917-11304160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:137-350
               
               
               Cow position:chr9:25400045-25400269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:150-351
               
               
               Cow position:chr9:51557351-51557558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:151-343
               
               
               Cow position:chr9:26310650-26310442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:151-350
               
               
               Cow position:chr9:4262946-4263160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 199

               
               
               Conread position:151-351
               
               
               Cow position:chr9:34284094-34283881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:153-350
               
               
               Cow position:chr9:3343882-3343678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:153-350
               
               
               Cow position:chr9:33697173-33696965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:169-350
               
               
               Cow position:chr9:23797355-23797165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:172-347
               
               
               Cow position:chr9:40776913-40776730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:174-350
               
               
               Cow position:chr9:44770082-44770263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:180-364
               
               
               Cow position:chr9:41781761-41781569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:180-364
               
               
               Cow position:chr9:52839779-52839966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):98, 42

               
               
               Conread position:184-351
               
               
               Cow position:chr9:21080666-21080491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):53, 45

               
               
               Conread position:186-350
               
               
               Cow position:chr9:10819731-10819899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:186-350
               
               
               Cow position:chr9:38645241-38645415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:186-350
               
               
               Cow position:chr9:38941330-38941502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):98, 53

               
               
               Conread position:186-350
               
               
               Cow position:chr9:52513351-52513519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:186-350
               
               
               Cow position:chr9:55532916-55532743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:186-355
               
               
               Cow position:chr9:45171117-45171299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:187-350
               
               
               Cow position:chr9:22461640-22461802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:187-350
               
               
               Cow position:chr9:29339222-29339384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:193-350
               
               
               Cow position:chr9:43342424-43342260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:196-350
               
               
               Cow position:chr9:38289233-38289392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 154

               
               
               Conread position:39-269
               
               
               Cow position:chrX:45874793-45875034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:47-350
               
               
               Cow position:chrX:39126140-39126452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:49-270
               
               
               Cow position:chrX:18293736-18293959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:49-273
               
               
               Cow position:chrX:2186063-2186294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:49-287
               
               
               Cow position:chrX:7362046-7361811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:49-357
               
               
               Cow position:chrX:35925769-35926091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:50-288
               
               
               Cow position:chrX:34754387-34754137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):49, 194

               
               
               Conread position:50-337
               
               
               Cow position:chrX:2786743-2786443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 6

               
               
               Conread position:52-353
               
               
               Cow position:chrX:9416885-9416555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):44, 5

               
               
               Conread position:53-351
               
               
               Cow position:chrX:31729264-31729569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:55-268
               
               
               Cow position:chrX:30833036-30832817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:55-286
               
               
               Cow position:chrX:19188746-19188983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):44, 182

               
               
               Conread position:55-314
               
               
               Cow position:chrX:38935091-38935369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 189

               
               
               Conread position:55-327
               
               
               Cow position:chrX:43780043-43779743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 205

               
               
               Conread position:55-334
               
               
               Cow position:chrX:39546164-39545868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-337
               
               
               Cow position:chrX:38936510-38936814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 192

               
               
               Conread position:55-343
               
               
               Cow position:chrX:7351109-7351417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:55-344
               
               
               Cow position:chrX:34502728-34503041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-345
               
               
               Cow position:chrX:878562-878258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:55-345
               
               
               Cow position:chrX:25571184-25570871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 222

               
               
               Conread position:55-346
               
               
               Cow position:chrX:11939117-11938810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-346
               
               
               Cow position:chrX:20151660-20151979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:55-346
               
               
               Cow position:chrX:34565102-34565407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 41

               
               
               Conread position:55-347
               
               
               Cow position:chrX:7513324-7513611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:55-347
               
               
               Cow position:chrX:9041420-9041120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:55-348
               
               
               Cow position:chrX:10959591-10959270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 198

               
               
               Conread position:55-348
               
               
               Cow position:chrX:30963062-30962753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 179

               
               
               Conread position:55-350
               
               
               Cow position:chrX:4269257-4268938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 178

               
               
               Conread position:55-350
               
               
               Cow position:chrX:8730889-8731219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 324

               
               
               Conread position:55-350
               
               
               Cow position:chrX:10252372-10252073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:55-350
               
               
               Cow position:chrX:11655898-11656208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:55-350
               
               
               Cow position:chrX:14973925-14973619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 62

               
               
               Conread position:55-350
               
               
               Cow position:chrX:15147377-15147071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:55-350
               
               
               Cow position:chrX:18695110-18694804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:55-350
               
               
               Cow position:chrX:21593093-21593413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 194

               
               
               Conread position:55-350
               
               
               Cow position:chrX:31443012-31442702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:55-350
               
               
               Cow position:chrX:35388096-35387800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:55-350
               
               
               Cow position:chrX:37836397-37836704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):48, 189

               
               
               Conread position:55-350
               
               
               Cow position:chrX:48236621-48236944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 193

               
               
               Conread position:55-364
               
               
               Cow position:chrX:13647974-13647642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:55-364
               
               
               Cow position:chrX:38094716-38094378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:55-391
               
               
               Cow position:chrX:10866058-10865705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 224

               
               
               Conread position:56-157
               
               
               Cow position:chrX:45787465-45787567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-164
               
               
               Cow position:chrX:18812065-18812176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 109

               
               
               Conread position:56-165
               
               
               Cow position:chrX:7382134-7382247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-181
               
               
               Cow position:chrX:18195752-18195875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:56-181
               
               
               Cow position:chrX:36250051-36249922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chrX:2206733-2206610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-182
               
               
               Cow position:chrX:6639936-6640070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chrX:35609797-35609929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-182
               
               
               Cow position:chrX:38967461-38967588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-190
               
               
               Cow position:chrX:37540935-37541073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-191
               
               
               Cow position:chrX:21665783-21665641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:56-201
               
               
               Cow position:chrX:42855219-42855374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-212
               
               
               Cow position:chrX:25411647-25411821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:56-212
               
               
               Cow position:chrX:29770368-29770199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-215
               
               
               Cow position:chrX:33020296-33020467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:56-224
               
               
               Cow position:chrX:877213-877041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:56-225
               
               
               Cow position:chrX:31745236-31745069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-226
               
               
               Cow position:chrX:46315570-46315383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-229
               
               
               Cow position:chrX:23061264-23061432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 54

               
               
               Conread position:56-236
               
               
               Cow position:chrX:10437854-10437664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-240
               
               
               Cow position:chrX:20582841-20583029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:56-244
               
               
               Cow position:chrX:13265809-13265611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:56-245
               
               
               Cow position:chrX:8991698-8991897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:56-264
               
               
               Cow position:chrX:45015397-45015607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:56-267
               
               
               Cow position:chrX:40116232-40116451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-268
               
               
               Cow position:chrX:17908473-17908253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:56-269
               
               
               Cow position:chrX:9997523-9997298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:56-269
               
               
               Cow position:chrX:41743723-41743950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-269
               
               
               Cow position:chrX:45412844-45412625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:56-270
               
               
               Cow position:chrX:38439285-38439518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-271
               
               
               Cow position:chrX:26285790-26286019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 121

               
               
               Conread position:56-272
               
               
               Cow position:chrX:23970199-23970418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-272
               
               
               Cow position:chrX:41790634-41790406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-274
               
               
               Cow position:chrX:32128170-32127951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:56-275
               
               
               Cow position:chrX:45437017-45437255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:56-275
               
               
               Cow position:chrX:47757118-47756886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:56-276
               
               
               Cow position:chrX:28836091-28835859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:56-276
               
               
               Cow position:chrX:29509633-29509395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 204

               
               
               Conread position:56-276
               
               
               Cow position:chrX:40647788-40648029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:56-277
               
               
               Cow position:chrX:20752070-20752296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-278
               
               
               Cow position:chrX:28157296-28157543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:56-279
               
               
               Cow position:chrX:25816085-25815855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-280
               
               
               Cow position:chrX:8899835-8900074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 183

               
               
               Conread position:56-280
               
               
               Cow position:chrX:16790027-16789809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:56-280
               
               
               Cow position:chrX:19015253-19015484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:56-280
               
               
               Cow position:chrX:26876072-26875834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-281
               
               
               Cow position:chrX:17497907-17498133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:56-281
               
               
               Cow position:chrX:41198915-41199156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-284
               
               
               Cow position:chrX:11581745-11581983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):40, 146

               
               
               Conread position:56-285
               
               
               Cow position:chrX:20709882-20710125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:56-285
               
               
               Cow position:chrX:21672362-21672606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:56-285
               
               
               Cow position:chrX:35681157-35681393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:56-285
               
               
               Cow position:chrX:39938712-39938472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-286
               
               
               Cow position:chrX:5638359-5638117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:56-286
               
               
               Cow position:chrX:6234638-6234397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:56-286
               
               
               Cow position:chrX:9953952-9954191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:56-286
               
               
               Cow position:chrX:10831686-10831438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-286
               
               
               Cow position:chrX:12249617-12249863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:56-286
               
               
               Cow position:chrX:41167154-41166910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 241

               
               
               Conread position:56-286
               
               
               Cow position:chrX:42507836-42507596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:56-286
               
               
               Cow position:chrX:42874788-42875035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-286
               
               
               Cow position:chrX:43973369-43973597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-287
               
               
               Cow position:chrX:40452402-40452165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:56-288
               
               
               Cow position:chrX:14900911-14900674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-288
               
               
               Cow position:chrX:22624292-22624531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:56-288
               
               
               Cow position:chrX:25232401-25232648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:56-288
               
               
               Cow position:chrX:27509209-27508967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:56-288
               
               
               Cow position:chrX:28847068-28846838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 128

               
               
               Conread position:56-288
               
               
               Cow position:chrX:29876256-29876022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:56-290
               
               
               Cow position:chrX:40567410-40567654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 182

               
               
               Conread position:56-290
               
               
               Cow position:chrX:47191588-47191349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-292
               
               
               Cow position:chrX:34270217-34270460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:56-293
               
               
               Cow position:chrX:42461935-42461685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-297
               
               
               Cow position:chrX:36961446-36961707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:56-314
               
               
               Cow position:chrX:26440969-26440695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:56-314
               
               
               Cow position:chrX:34663033-34662756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):100, 70

               
               
               Conread position:56-318
               
               
               Cow position:chrX:29542408-29542123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-327
               
               
               Cow position:chrX:6488397-6488680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:56-328
               
               
               Cow position:chrX:31949120-31948830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:56-332
               
               
               Cow position:chrX:13912891-13913184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:56-332
               
               
               Cow position:chrX:32020311-32020025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:56-334
               
               
               Cow position:chrX:7497054-7497353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-334
               
               
               Cow position:chrX:42499218-42498938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-335
               
               
               Cow position:chrX:23514207-23513905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:56-336
               
               
               Cow position:chrX:48243641-48243362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:56-338
               
               
               Cow position:chrX:7721795-7722103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-340
               
               
               Cow position:chrX:26625866-26625554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:56-340
               
               
               Cow position:chrX:48195230-48194918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-343
               
               
               Cow position:chrX:8917664-8917961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 123

               
               
               Conread position:56-343
               
               
               Cow position:chrX:16762583-16762894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:56-343
               
               
               Cow position:chrX:20887834-20887521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:56-343
               
               
               Cow position:chrX:43049155-43049451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:56-344
               
               
               Cow position:chrX:11082803-11082501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-344
               
               
               Cow position:chrX:25337990-25338307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-344
               
               
               Cow position:chrX:31489322-31489641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:56-344
               
               
               Cow position:chrX:43527314-43527629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 198

               
               
               Conread position:56-345
               
               
               Cow position:chrX:17630992-17630679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:56-346
               
               
               Cow position:chrX:4826017-4825713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:56-346
               
               
               Cow position:chrX:6690437-6690137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-346
               
               
               Cow position:chrX:23497854-23497568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:56-346
               
               
               Cow position:chrX:29602022-29601705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-346
               
               
               Cow position:chrX:32309916-32310229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:56-346
               
               
               Cow position:chrX:32623393-32623694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-346
               
               
               Cow position:chrX:45598793-45598482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-347
               
               
               Cow position:chrX:1503149-1503451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:56-347
               
               
               Cow position:chrX:2300744-2301048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:56-347
               
               
               Cow position:chrX:19930466-19930767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):40, 193

               
               
               Conread position:56-347
               
               
               Cow position:chrX:28111317-28111633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:56-347
               
               
               Cow position:chrX:34401808-34402130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):35, 100

               
               
               Conread position:56-347
               
               
               Cow position:chrX:35288471-35288779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:56-347
               
               
               Cow position:chrX:37574667-37574964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:56-347
               
               
               Cow position:chrX:42171489-42171172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:56-348
               
               
               Cow position:chrX:151712-152025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:56-348
               
               
               Cow position:chrX:37910263-37910570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 69

               
               
               Conread position:56-348
               
               
               Cow position:chrX:46532699-46532371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):43, 325

               
               
               Conread position:56-349
               
               
               Cow position:chrX:18216087-18216392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 202

               
               
               Conread position:56-349
               
               
               Cow position:chrX:30543477-30543158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:56-350
               
               
               Cow position:chrX:126603-126894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:56-350
               
               
               Cow position:chrX:619197-618882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chrX:1514590-1514292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:56-350
               
               
               Cow position:chrX:4768561-4768859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 66

               
               
               Conread position:56-350
               
               
               Cow position:chrX:5017597-5017295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:56-350
               
               
               Cow position:chrX:6265775-6265472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:56-350
               
               
               Cow position:chrX:6278695-6278372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 317

               
               
               Conread position:56-350
               
               
               Cow position:chrX:7277730-7278038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:56-350
               
               
               Cow position:chrX:7571717-7572033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:56-350
               
               
               Cow position:chrX:9201357-9201675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:56-350
               
               
               Cow position:chrX:9635370-9635064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chrX:10412178-10411857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chrX:11633489-11633809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-350
               
               
               Cow position:chrX:12437429-12437145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):163, 40

               
               
               Conread position:56-350
               
               
               Cow position:chrX:12980020-12979707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:56-350
               
               
               Cow position:chrX:14884151-14883828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:56-350
               
               
               Cow position:chrX:15545705-15546008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:56-350
               
               
               Cow position:chrX:17662786-17662471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chrX:17725785-17726102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:56-350
               
               
               Cow position:chrX:17888595-17888296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:56-350
               
               
               Cow position:chrX:20697797-20697483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:56-350
               
               
               Cow position:chrX:23091692-23091998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chrX:23785464-23785774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:56-350
               
               
               Cow position:chrX:25035577-25035256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 183

               
               
               Conread position:56-350
               
               
               Cow position:chrX:27174806-27175124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 312

               
               
               Conread position:56-350
               
               
               Cow position:chrX:27432108-27431791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-350
               
               
               Cow position:chrX:27516343-27516645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chrX:27705400-27705712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:56-350
               
               
               Cow position:chrX:28134156-28134464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chrX:28866182-28865879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:56-350
               
               
               Cow position:chrX:29120867-29121174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):127, 43

               
               
               Conread position:56-350
               
               
               Cow position:chrX:29545069-29544751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:56-350
               
               
               Cow position:chrX:30421129-30420825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:56-350
               
               
               Cow position:chrX:31311836-31312156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:56-350
               
               
               Cow position:chrX:32420029-32420338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:56-350
               
               
               Cow position:chrX:33000714-33001032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:56-350
               
               
               Cow position:chrX:34192488-34192783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:56-350
               
               
               Cow position:chrX:34238531-34238848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:56-350
               
               
               Cow position:chrX:34532339-34532647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:56-350
               
               
               Cow position:chrX:34554539-34554849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:56-350
               
               
               Cow position:chrX:35413443-35413737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:56-350
               
               
               Cow position:chrX:35542702-35543014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:56-350
               
               
               Cow position:chrX:36778218-36778524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 277

               
               
               Conread position:56-350
               
               
               Cow position:chrX:36975760-36976077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):43, 311

               
               
               Conread position:56-350
               
               
               Cow position:chrX:37072216-37072516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:56-350
               
               
               Cow position:chrX:37119410-37119720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:56-350
               
               
               Cow position:chrX:37232220-37232534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:56-350
               
               
               Cow position:chrX:37489541-37489845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:56-350
               
               
               Cow position:chrX:37781307-37780982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:56-350
               
               
               Cow position:chrX:38006957-38006643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chrX:38227279-38226984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:56-350
               
               
               Cow position:chrX:38549259-38549574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:56-350
               
               
               Cow position:chrX:38853007-38853324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:56-350
               
               
               Cow position:chrX:38963917-38964234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:56-350
               
               
               Cow position:chrX:40035634-40035313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-350
               
               
               Cow position:chrX:41122882-41123186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 176

               
               
               Conread position:56-350
               
               
               Cow position:chrX:42247373-42247056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:56-350
               
               
               Cow position:chrX:42470126-42469814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:56-350
               
               
               Cow position:chrX:42492704-42492398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:56-350
               
               
               Cow position:chrX:43730404-43730097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:56-350
               
               
               Cow position:chrX:44396825-44397136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:56-350
               
               
               Cow position:chrX:46587628-46587948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 315

               
               
               Conread position:56-351
               
               
               Cow position:chrX:5900268-5900589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:56-351
               
               
               Cow position:chrX:7695570-7695877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:56-351
               
               
               Cow position:chrX:7718665-7718961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-351
               
               
               Cow position:chrX:8797058-8797378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-351
               
               
               Cow position:chrX:16416317-16416627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 213

               
               
               Conread position:56-352
               
               
               Cow position:chrX:29289387-29289706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 124

               
               
               Conread position:56-353
               
               
               Cow position:chrX:1055579-1055252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:56-353
               
               
               Cow position:chrX:4044040-4043737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:56-353
               
               
               Cow position:chrX:11844432-11844112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:56-353
               
               
               Cow position:chrX:15814908-15815211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:56-353
               
               
               Cow position:chrX:23563986-23563662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:56-353
               
               
               Cow position:chrX:34441640-34441325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:56-355
               
               
               Cow position:chrX:44961558-44961883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:56-364
               
               
               Cow position:chrX:678757-678432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:56-364
               
               
               Cow position:chrX:27394203-27393883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:56-364
               
               
               Cow position:chrX:38642068-38642391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-366
               
               
               Cow position:chrX:17794796-17795125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:56-367
               
               
               Cow position:chrX:7178719-7179037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:56-367
               
               
               Cow position:chrX:9425931-9425609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:56-367
               
               
               Cow position:chrX:14599340-14599675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:56-367
               
               
               Cow position:chrX:34543598-34543930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:56-369
               
               
               Cow position:chrX:4633040-4632710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:57-184
               
               
               Cow position:chrX:25036888-25036753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-246
               
               
               Cow position:chrX:35284435-35284638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:57-247
               
               
               Cow position:chrX:42339124-42338935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:57-266
               
               
               Cow position:chrX:37048768-37048548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:57-280
               
               
               Cow position:chrX:42994426-42994660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:57-286
               
               
               Cow position:chrX:1810350-1810108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:57-287
               
               
               Cow position:chrX:16996318-16996546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 118

               
               
               Conread position:57-289
               
               
               Cow position:chrX:28845657-28845889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:57-305
               
               
               Cow position:chrX:3161202-3160959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:57-314
               
               
               Cow position:chrX:12405565-12405291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 29

               
               
               Conread position:57-328
               
               
               Cow position:chrX:27680213-27680503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:57-338
               
               
               Cow position:chrX:41560427-41560151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:57-343
               
               
               Cow position:chrX:21004493-21004803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-343
               
               
               Cow position:chrX:27446500-27446806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):42, 161

               
               
               Conread position:57-343
               
               
               Cow position:chrX:42235722-42235404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):42, 111

               
               
               Conread position:57-346
               
               
               Cow position:chrX:7161883-7162179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:57-346
               
               
               Cow position:chrX:13382137-13382448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-347
               
               
               Cow position:chrX:20801591-20801893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 40

               
               
               Conread position:57-350
               
               
               Cow position:chrX:5872125-5872443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:57-350
               
               
               Cow position:chrX:13177653-13177349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:57-350
               
               
               Cow position:chrX:20340079-20339768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):53, 92

               
               
               Conread position:57-350
               
               
               Cow position:chrX:33639783-33640101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 191

               
               
               Conread position:57-351
               
               
               Cow position:chrX:15007339-15007021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 189

               
               
               Conread position:57-364
               
               
               Cow position:chrX:11717971-11717640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:57-367
               
               
               Cow position:chrX:11073377-11073046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:58-180
               
               
               Cow position:chrX:48536853-48536724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-212
               
               
               Cow position:chrX:35409478-35409633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:58-223
               
               
               Cow position:chrX:21663121-21663296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:58-271
               
               
               Cow position:chrX:44053071-44053298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:58-286
               
               
               Cow position:chrX:1176170-1175930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:58-286
               
               
               Cow position:chrX:9855113-9855350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):41, 234

               
               
               Conread position:58-286
               
               
               Cow position:chrX:11589776-11589536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:58-310
               
               
               Cow position:chrX:25237989-25238256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:58-332
               
               
               Cow position:chrX:15596850-15597136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 169

               
               
               Conread position:58-341
               
               
               Cow position:chrX:7646073-7646369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:58-343
               
               
               Cow position:chrX:11856241-11856550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:58-343
               
               
               Cow position:chrX:41992228-41991927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):92, 8

               
               
               Conread position:58-350
               
               
               Cow position:chrX:917559-917241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:58-350
               
               
               Cow position:chrX:45501961-45502273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:58-351
               
               
               Cow position:chrX:1499482-1499795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 60

               
               
               Conread position:58-366
               
               
               Cow position:chrX:41238553-41238210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:252
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):41, 203

               
               
               Conread position:58-369
               
               
               Cow position:chrX:12309576-12309240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:59-191
               
               
               Cow position:chrX:31256681-31256817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:59-286
               
               
               Cow position:chrX:3579758-3579996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 183

               
               
               Conread position:59-286
               
               
               Cow position:chrX:17541777-17542012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):40, 106

               
               
               Conread position:59-288
               
               
               Cow position:chrX:48035241-48035480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 176

               
               
               Conread position:59-332
               
               
               Cow position:chrX:15139731-15139452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:59-348
               
               
               Cow position:chrX:17231548-17231859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 307

               
               
               Conread position:59-350
               
               
               Cow position:chrX:28878345-28878048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):94, 35

               
               
               Conread position:60-344
               
               
               Cow position:chrX:161236-161533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:60-350
               
               
               Cow position:chrX:46073006-46072690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:60-355
               
               
               Cow position:chrX:41526709-41526397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:60-359
               
               
               Cow position:chrX:39558532-39558213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:60-374
               
               
               Cow position:chrX:40481058-40480717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):39, 186

               
               
               Conread position:62-343
               
               
               Cow position:chrX:8925522-8925819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:63-350
               
               
               Cow position:chrX:32820847-32821155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:64-303
               
               
               Cow position:chrX:7336645-7336896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 161

               
               
               Conread position:65-348
               
               
               Cow position:chrX:35268707-35268985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:66-307
               
               
               Cow position:chrX:13785537-13785280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:68-286
               
               
               Cow position:chrX:22465778-22466007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:70-276
               
               
               Cow position:chrX:29563546-29563326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:70-336
               
               
               Cow position:chrX:20791993-20791702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:70-346
               
               
               Cow position:chrX:47186496-47186204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):29, 171

               
               
               Conread position:70-350
               
               
               Cow position:chrX:169701-169419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:70-355
               
               
               Cow position:chrX:27145447-27145736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:72-350
               
               
               Cow position:chrX:22387421-22387123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:73-287
               
               
               Cow position:chrX:27772133-27771912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:73-347
               
               
               Cow position:chrX:31252245-31252531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:73-350
               
               
               Cow position:chrX:6407376-6407670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:73-350
               
               
               Cow position:chrX:46433310-46433617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 177

               
               
               Conread position:74-350
               
               
               Cow position:chrX:4398954-4399246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:75-288
               
               
               Cow position:chrX:25208017-25207800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 117

               
               
               Conread position:76-182
               
               
               Cow position:chrX:41271377-41271267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:80-350
               
               
               Cow position:chrX:27227961-27228253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:82-350
               
               
               Cow position:chrX:41068564-41068852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:85-350
               
               
               Cow position:chrX:14275896-14275616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:87-367
               
               
               Cow position:chrX:36355957-36356251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:90-269
               
               
               Cow position:chrX:35969238-35969050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:91-350
               
               
               Cow position:chrX:9365827-9365549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:94-220
               
               
               Cow position:chrX:37831738-37831611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:94-350
               
               
               Cow position:chrX:20584167-20584455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):5, 66

               
               
               Conread position:95-347
               
               
               Cow position:chrX:39415519-39415246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 70

               
               
               Conread position:96-276
               
               
               Cow position:chrX:36723239-36723046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:96-350
               
               
               Cow position:chrX:38728595-38728860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:98-350
               
               
               Cow position:chrX:29680406-29680134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:98-364
               
               
               Cow position:chrX:870312-870040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:100-266
               
               
               Cow position:chrX:10278670-10278844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 132

               
               
               Conread position:100-350
               
               
               Cow position:chrX:630450-630184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 138

               
               
               Conread position:100-366
               
               
               Cow position:chrX:11085201-11084921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:101-350
               
               
               Cow position:chrX:11614556-11614820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:101-350
               
               
               Cow position:chrX:23561733-23561985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:102-355
               
               
               Cow position:chrX:22454234-22453967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:104-347
               
               
               Cow position:chrX:41870933-41871191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:105-286
               
               
               Cow position:chrX:27685108-27685300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 146

               
               
               Conread position:105-342
               
               
               Cow position:chrX:21566263-21566526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:107-344
               
               
               Cow position:chrX:7710680-7710418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:107-350
               
               
               Cow position:chrX:34315393-34315648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:108-350
               
               
               Cow position:chrX:44192585-44192318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 262

               
               
               Conread position:109-350
               
               
               Cow position:chrX:616397-616132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:109-350
               
               
               Cow position:chrX:41027022-41027285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:111-344
               
               
               Cow position:chrX:30840423-30840667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:112-346
               
               
               Cow position:chrX:40685463-40685205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:113-350
               
               
               Cow position:chrX:31294686-31294445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:118-350
               
               
               Cow position:chrX:5679689-5679445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):62, 123

               
               
               Conread position:123-353
               
               
               Cow position:chrX:19003182-19003408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:124-350
               
               
               Cow position:chrX:26881685-26881438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:128-350
               
               
               Cow position:chrX:38654543-38654314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:130-350
               
               
               Cow position:chrX:23940136-23939922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:130-350
               
               
               Cow position:chrX:29194123-29194357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:137-350
               
               
               Cow position:chrX:31515065-31515301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:137-363
               
               
               Cow position:chrX:48044618-48044376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:139-351
               
               
               Cow position:chrX:16348672-16348443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:142-337
               
               
               Cow position:chrX:10516157-10516367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:145-350
               
               
               Cow position:chrX:29549644-29549424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:145-350
               
               
               Cow position:chrX:37129172-37129395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 218

               
               
               Conread position:149-350
               
               
               Cow position:chrX:25441607-25441417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:152-350
               
               
               Cow position:chrX:42855365-42855584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:158-350
               
               
               Cow position:chrX:23562551-23562759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:177-350
               
               
               Cow position:chrX:46429877-46429692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:179-350
               
               
               Cow position:chrX:20881992-20881819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:182-347
               
               
               Cow position:chrX:6260198-6260025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:185-350
               
               
               Cow position:chrX:31627028-31626851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:186-347
               
               
               Cow position:chrX:19943283-19943112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:186-350
               
               
               Cow position:chrX:6463565-6463724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:186-350
               
               
               Cow position:chrX:22915082-22914916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:186-350
               
               
               Cow position:chrX:29050201-29050374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:186-351
               
               
               Cow position:chrX:32978123-32977957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):103, 42

               
               
               Conread position:186-352
               
               
               Cow position:chrX:22393032-22392855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:187-350
               
               
               Cow position:chrX:39220034-39220206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:190-350
               
               
               Cow position:chrX:29553243-29553412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:192-347
               
               
               Cow position:chrX:18964865-18964705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:196-350
               
               
               Cow position:chrX:23188813-23188657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:201-350
               
               
               Cow position:chrX:10305379-10305224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:205-350
               
               
               Cow position:chrX:4559710-4559860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:238-366
               
               
               Cow position:chrX:1337274-1337147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 38