Cow genome map
| Conread name: | Pig2-142N16 |
| Conread position: | 228-589 |
| Cow position: | chr1:22223363-22223726 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 48 |
| Conread position: | 298-590 |
| Cow position: | chr1:51497018-51497311 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 228 |
| Conread position: | 299-590 |
| Cow position: | chr1:51475820-51475528 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 194 |
| Conread position: | 311-589 |
| Cow position: | chr1:22236310-22236593 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 230-590 |
| Cow position: | chr10:14296918-14296557 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 230-590 |
| Cow position: | chr10:14339606-14339245 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 233-589 |
| Cow position: | chr10:15742664-15742307 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 101 |
| Conread position: | 208-590 |
| Cow position: | chr11:75212579-75212962 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 206 |
| Conread position: | 210-590 |
| Cow position: | chr11:74315009-74315392 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 212-590 |
| Cow position: | chr11:74294194-74294572 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 87, 10 |
| Conread position: | 214-590 |
| Cow position: | chr11:75197502-75197879 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 219-590 |
| Cow position: | chr11:74337395-74337770 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 28, 330 |
| Conread position: | 221-590 |
| Cow position: | chr11:74303181-74302811 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 227-590 |
| Cow position: | chr11:74323018-74322654 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 230-587 |
| Cow position: | chr11:75246914-75247272 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 50 |
| Conread position: | 232-590 |
| Cow position: | chr11:75235044-75235403 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 244-590 |
| Cow position: | chr11:75219495-75219842 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 246-590 |
| Cow position: | chr11:74359706-74360051 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 254-590 |
| Cow position: | chr11:75279707-75280044 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 254-587 |
| Cow position: | chr15:52710171-52710505 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 120, 239 |
| Conread position: | 321-590 |
| Cow position: | chr15:52784865-52785135 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 228 |
| Conread position: | 341-590 |
| Cow position: | chr15:52811689-52811939 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 210-584 |
| Cow position: | chr19:18502446-18502071 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 91 |
| Conread position: | 215-590 |
| Cow position: | chr19:18481698-18481322 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 160, 334 |
| Conread position: | 216-584 |
| Cow position: | chr19:18495560-18495191 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 216-584 |
| Cow position: | chr19:18513887-18513518 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 216-586 |
| Cow position: | chr19:18694229-18693858 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 216-590 |
| Cow position: | chr19:18679158-18678784 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 220-590 |
| Cow position: | chr19:18469195-18469565 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 221-590 |
| Cow position: | chr19:18716102-18715732 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 153, 271 |
| Conread position: | 228-590 |
| Cow position: | chr19:18456406-18456043 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 233-590 |
| Cow position: | chr19:18446088-18445730 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 246-476 |
| Cow position: | chr19:20704138-20703907 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 246-590 |
| Cow position: | chr19:20692732-20692387 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 123, 243 |
| Conread position: | 251-590 |
| Cow position: | chr19:20837772-20837432 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 221-584 |
| Cow position: | chr2:86480411-86480047 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 138, 157 |
| Conread position: | 229-578 |
| Cow position: | chr2:86441721-86442069 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 142, 185 |
| Conread position: | 311-590 |
| Cow position: | chr2:86493714-86493434 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 99 |
| Conread position: | 382-590 |
| Cow position: | chr2:86511919-86512127 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-590 |
| Cow position: | chr23:24609315-24609689 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 147, 140 |
| Conread position: | 226-584 |
| Cow position: | chr25:23352991-23353351 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 230-590 |
| Cow position: | chr25:34487197-34486838 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 153, 138 |
| Conread position: | 302-590 |
| Cow position: | chr25:23329853-23329564 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 203-590 |
| Cow position: | chr29:20004006-20003617 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 210-590 |
| Cow position: | chr29:21177253-21176872 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 213-590 |
| Cow position: | chr29:21208045-21207667 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 217-590 |
| Cow position: | chr29:18726498-18726124 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 157, 284 |
| Conread position: | 230-589 |
| Cow position: | chr29:20020409-20020049 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 299-590 |
| Cow position: | chr29:21188391-21188099 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 213-590 |
| Cow position: | chr3:62238472-62238094 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 129, 123 |
| Conread position: | 233-590 |
| Cow position: | chr3:19767064-19766706 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 229-590 |
| Cow position: | chr4:58712608-58712970 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 44 |
| Conread position: | 230-590 |
| Cow position: | chr4:58725374-58725735 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 143, 152 |
| Conread position: | 246-590 |
| Cow position: | chr4:60690670-60691015 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 245-589 |
| Cow position: | chr5:25909580-25909237 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 124, 246 |
| Conread position: | 246-587 |
| Cow position: | chr5:26165228-26164886 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 128, 308 |
| Conread position: | 246-587 |
| Cow position: | chr5:26181704-26181362 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 248-590 |
| Cow position: | chr5:25713571-25713225 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 238 |
| Conread position: | 248-590 |
| Cow position: | chr5:25736834-25736488 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 24, 302 |
| Conread position: | 221-586 |
| Cow position: | chr7:8730881-8731247 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 138, 155 |
| Conread position: | 221-586 |
| Cow position: | chr7:8793941-8794307 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 148, 193 |
| Conread position: | 221-590 |
| Cow position: | chr7:32802166-32802536 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 153, 271 |
| Conread position: | 229-582 |
| Cow position: | chr7:7215910-7215555 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 225 |
| Conread position: | 229-586 |
| Cow position: | chr7:8781666-8782024 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 140, 185 |
| Conread position: | 229-590 |
| Cow position: | chr7:7197144-7196782 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 140, 187 |
| Conread position: | 229-590 |
| Cow position: | chr7:7225154-7224792 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 140, 264 |
| Conread position: | 231-590 |
| Cow position: | chr7:32688001-32688361 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 121, 108 |
| Conread position: | 231-590 |
| Cow position: | chr7:32730511-32730871 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 59, 44 |
| Conread position: | 232-590 |
| Cow position: | chr7:32774148-32773789 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 142, 259 |
| Conread position: | 233-575 |
| Cow position: | chr7:32785737-32786080 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 141, 259 |
| Conread position: | 251-590 |
| Cow position: | chr7:8766436-8766776 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 251-590 |
| Cow position: | chr7:32747749-32748089 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 83 |
| Conread position: | 251-590 |
| Cow position: | chr7:32764906-32765246 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 125 |
| Conread position: | 252-584 |
| Cow position: | chr7:32696501-32696168 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 239 |
| Conread position: | 253-590 |
| Cow position: | chr7:32741610-32741948 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 254-590 |
| Cow position: | chr7:7292348-7292685 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 115, 290 |
| Conread position: | 315-590 |
| Cow position: | chr7:28654867-28655143 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 234 |
| Conread position: | 197-590 |
| Cow position: | chr8:28620760-28620366 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 213-590 |
| Cow position: | chr8:29340601-29340979 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 221-590 |
| Cow position: | chrX:16726008-16725639 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 237-590 |
| Cow position: | chrX:16740576-16740222 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 137, 293 |
| Conread position: | 251-464 |
| Cow position: | chrX:16705555-16705341 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 251-464 |
| Cow position: | chrX:16705933-16705719 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 251-590 |
| Cow position: | chrX:16705040-16704700 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 252-590 |
| Cow position: | chrX:16713326-16712987 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 122, 0 |