• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Pig2-31G11
        

               
Conread position:
               
2-369
               

               
Cow position:
               
chr1:7452751-7452375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr1:35000170-35000390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr1:97472825-97473069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
44, 202
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr1:58146185-58146462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 230
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr1:29888609-29888901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
38, 140
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr1:87115167-87114812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr1:14026161-14025789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 117
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr1:95305165-95305534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
43, 209
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr1:67603758-67604127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
41, 207
               

               
Conread position:
               
40-365
               

               
Cow position:
               
chr1:3327576-3327918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 168
               

               
Conread position:
               
42-263
               

               
Cow position:
               
chr1:98426105-98425873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
38, 183
               

               
Conread position:
               
42-269
               

               
Cow position:
               
chr1:83643032-83643268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
42-275
               

               
Cow position:
               
chr1:92072412-92072640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
42-355
               

               
Cow position:
               
chr1:101623267-101622946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr1:71242291-71242623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 162
               

               
Conread position:
               
59-367
               

               
Cow position:
               
chr1:68929374-68929062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
80-290
               

               
Cow position:
               
chr1:3330763-3330546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr1:58142979-58143099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-209
               

               
Cow position:
               
chr1:78562115-78561991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr1:61607503-61607340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr1:33391069-33390899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr1:90971004-90970834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr1:94534764-94534934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
87-264
               

               
Cow position:
               
chr1:30069434-30069255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
45, 98
               

               
Conread position:
               
87-275
               

               
Cow position:
               
chr1:36075050-36075243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-334
               

               
Cow position:
               
chr1:35429799-35429559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr1:2758533-2758271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr1:80172590-80172310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr1:90041720-90042002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
89-349
               

               
Cow position:
               
chr1:13695304-13695046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
98-355
               

               
Cow position:
               
chr1:49051517-49051779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
39, 135
               

               
Conread position:
               
99-355
               

               
Cow position:
               
chr1:102411103-102410846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
106-369
               

               
Cow position:
               
chr1:1923803-1924068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
119-356
               

               
Cow position:
               
chr1:27939849-27939611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
119-356
               

               
Cow position:
               
chr1:98409541-98409302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
119-369
               

               
Cow position:
               
chr1:26910991-26910742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
160-369
               

               
Cow position:
               
chr1:16538328-16538531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr10:4676396-4676083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 216
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr10:30085982-30085750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr10:12215665-12215408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 110
               

               
Conread position:
               
4-341
               

               
Cow position:
               
chr10:25934256-25933944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
128, 38
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr10:4399660-4400034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr10:55964977-55964593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 233
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr10:31165579-31165231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
18, 114
               

               
Conread position:
               
6-343
               

               
Cow position:
               
chr10:69887475-69887833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
28, 206
               

               
Conread position:
               
40-359
               

               
Cow position:
               
chr10:14424123-14423804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
42-247
               

               
Cow position:
               
chr10:21043450-21043659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
42-251
               

               
Cow position:
               
chr10:33815931-33816150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
42-353
               

               
Cow position:
               
chr10:68256369-68256046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 28
               

               
Conread position:
               
44-368
               

               
Cow position:
               
chr10:1339201-1338866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
48-352
               

               
Cow position:
               
chr10:36818068-36817752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
48-369
               

               
Cow position:
               
chr10:16753329-16753669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
86-257
               

               
Cow position:
               
chr10:50347361-50347532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
87-201
               

               
Cow position:
               
chr10:61649809-61649693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-212
               

               
Cow position:
               
chr10:32884097-32884224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 105
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr10:32096792-32096632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr10:53797824-53797983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
87-343
               

               
Cow position:
               
chr10:24720235-24719970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-343
               

               
Cow position:
               
chr10:32307074-32306825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
195, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr10:33136013-33135742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-367
               

               
Cow position:
               
chr10:10076168-10076444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr10:22588079-22587801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr10:25925183-25925466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr10:30084741-30084458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 113
               

               
Conread position:
               
89-355
               

               
Cow position:
               
chr10:40598838-40598573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
90-353
               

               
Cow position:
               
chr10:61535630-61535884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
90-369
               

               
Cow position:
               
chr10:38792189-38791910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
91-353
               

               
Cow position:
               
chr10:67295688-67295957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
97-355
               

               
Cow position:
               
chr10:51684745-51684487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
101-369
               

               
Cow position:
               
chr10:13337486-13337753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
32, 100
               

               
Conread position:
               
119-369
               

               
Cow position:
               
chr10:47482066-47481820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
134-359
               

               
Cow position:
               
chr10:59341659-59341432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
174-335
               

               
Cow position:
               
chr10:62888226-62888069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
201-369
               

               
Cow position:
               
chr10:6157694-6157528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr11:8100334-8100706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr11:34680052-34679800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr11:10135047-10135396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
37, 131
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr11:12337062-12336685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
44, 119
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr11:62186722-62187091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 198
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr11:63668408-63668789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 118
               

               
Conread position:
               
13-368
               

               
Cow position:
               
chr11:37331875-37331531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
17-265
               

               
Cow position:
               
chr11:1045070-1045338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
40-343
               

               
Cow position:
               
chr11:62649283-62648976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
40-361
               

               
Cow position:
               
chr11:12369653-12369335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
40-366
               

               
Cow position:
               
chr11:2609948-2610260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
40-369
               

               
Cow position:
               
chr11:4660546-4660887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 138
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr11:65720258-65720034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
42-329
               

               
Cow position:
               
chr11:2536516-2536795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
42-339
               

               
Cow position:
               
chr11:37710250-37709928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
38, 183
               

               
Conread position:
               
45-359
               

               
Cow position:
               
chr11:82532006-82532334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
78-357
               

               
Cow position:
               
chr11:35943076-35942802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
87-199
               

               
Cow position:
               
chr11:81719344-81719459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
87-215
               

               
Cow position:
               
chr11:19665483-19665355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr11:13056169-13056337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr11:61183123-61182953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr11:23051292-23051469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
87-276
               

               
Cow position:
               
chr11:24964189-24964001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr11:30129899-30130169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
44, 121
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr11:38109112-38109374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
87-359
               

               
Cow position:
               
chr11:49608213-49608460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr11:63674832-63675112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 110
               

               
Conread position:
               
89-247
               

               
Cow position:
               
chr11:78471780-78471937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
89-355
               

               
Cow position:
               
chr11:41534923-41535188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
90-356
               

               
Cow position:
               
chr11:21797527-21797260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
91-356
               

               
Cow position:
               
chr11:4158681-4158423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
41, 5
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr11:19684728-19684993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 125
               

               
Conread position:
               
95-355
               

               
Cow position:
               
chr11:9348966-9348709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 121
               

               
Conread position:
               
99-350
               

               
Cow position:
               
chr11:41700499-41700247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 32
               

               
Conread position:
               
103-355
               

               
Cow position:
               
chr11:66492028-66492280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
31, 96
               

               
Conread position:
               
106-247
               

               
Cow position:
               
chr11:16295731-16295872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 115
               

               
Conread position:
               
110-369
               

               
Cow position:
               
chr11:36261212-36260951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
119-355
               

               
Cow position:
               
chr11:35367339-35367573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr12:31709493-31709856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 206
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr12:2698932-2699317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 232
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chr12:36863298-36863671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chr12:23030924-23031287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 223
               

               
Conread position:
               
40-343
               

               
Cow position:
               
chr12:26255706-26255374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
44-223
               

               
Cow position:
               
chr12:10411877-10411686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
87-226
               

               
Cow position:
               
chr12:24005758-24005618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr12:11314730-11314900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-358
               

               
Cow position:
               
chr12:26544999-26544727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr12:39567609-39567891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr12:7094719-7094503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
89-247
               

               
Cow position:
               
chr12:23476423-23476266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
98-369
               

               
Cow position:
               
chr12:42427873-42428140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
255-361
               

               
Cow position:
               
chr12:5948783-5948677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr13:3140429-3140675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 119
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chr13:49507642-49507378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
44, 230
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr13:642870-643160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr13:30478978-30479359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 208
               

               
Conread position:
               
9-369
               

               
Cow position:
               
chr13:27688547-27688925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
33, 111
               

               
Conread position:
               
41-368
               

               
Cow position:
               
chr13:32704515-32704830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
39, 68
               

               
Conread position:
               
42-215
               

               
Cow position:
               
chr13:14023845-14023661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr13:54633293-54632958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
48-358
               

               
Cow position:
               
chr13:12485597-12485279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
87-195
               

               
Cow position:
               
chr13:42260534-42260644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-254
               

               
Cow position:
               
chr13:15852425-15852592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr13:41204279-41204109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-295
               

               
Cow position:
               
chr13:31487557-31487359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr13:17490852-17490569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr13:44985147-44985428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr13:58020760-58020481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
89-227
               

               
Cow position:
               
chr13:47179253-47179118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
89-355
               

               
Cow position:
               
chr13:33244018-33244273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
90-369
               

               
Cow position:
               
chr13:54629017-54629297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
106-369
               

               
Cow position:
               
chr13:45307334-45307596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 91
               

               
Conread position:
               
119-365
               

               
Cow position:
               
chr13:52416427-52416187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
13, 96
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr14:3067129-3066738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
46, 117
               

               
Conread position:
               
4-367
               

               
Cow position:
               
chr14:13395370-13395004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr14:37773159-37772938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 106
               

               
Conread position:
               
19-368
               

               
Cow position:
               
chr14:2271295-2271653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
40-343
               

               
Cow position:
               
chr14:13526560-13526872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
42-355
               

               
Cow position:
               
chr14:29234908-29234589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 185
               

               
Conread position:
               
42-358
               

               
Cow position:
               
chr14:26624150-26623822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 184
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr14:36647247-36646916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr14:35120473-35120310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr14:12469417-12469586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr14:45795691-45795521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-263
               

               
Cow position:
               
chr14:38339343-38339167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-290
               

               
Cow position:
               
chr14:30139790-30139996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
45, 68
               

               
Conread position:
               
87-335
               

               
Cow position:
               
chr14:26155757-26156005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr14:20488296-20488003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
38, 233
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr14:38338907-38338622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
88-257
               

               
Cow position:
               
chr14:20453217-20453047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
88-266
               

               
Cow position:
               
chr14:14486648-14486470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
90-336
               

               
Cow position:
               
chr14:26477118-26477366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 125
               

               
Conread position:
               
91-351
               

               
Cow position:
               
chr14:40061803-40061533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
6, 148
               

               
Conread position:
               
131-361
               

               
Cow position:
               
chr14:38340902-38340676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
133-369
               

               
Cow position:
               
chr14:40350416-40350177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
142-355
               

               
Cow position:
               
chr14:40876601-40876397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
107, 51
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr15:14472508-14472231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 135
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr15:50744338-50744708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 213
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr15:12825107-12824785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr15:16896668-16896390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 55
               

               
Conread position:
               
40-356
               

               
Cow position:
               
chr15:52931273-52930945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
40-357
               

               
Cow position:
               
chr15:34401300-34401620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
42-251
               

               
Cow position:
               
chr15:15237196-15236983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
87-286
               

               
Cow position:
               
chr15:5124143-5124342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr15:51450529-51450802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr15:603714-603410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr15:3278335-3278062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr15:16923267-16922984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr15:22249074-22248803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr15:28094536-28094811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
89-237
               

               
Cow position:
               
chr15:12727029-12727177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 108
               

               
Conread position:
               
92-369
               

               
Cow position:
               
chr15:10346003-10345726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
125-369
               

               
Cow position:
               
chr15:29658435-29658184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
7, 99
               

               
Conread position:
               
191-369
               

               
Cow position:
               
chr15:52814114-52813940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
91, 26
               

               
Conread position:
               
196-360
               

               
Cow position:
               
chr15:31029331-31029494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
216-354
               

               
Cow position:
               
chr15:41164412-41164272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr16:38592470-38592725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr16:23886494-23886197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
45, 77
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr16:52270391-52270020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
6-202
               

               
Cow position:
               
chr16:27234648-27234439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
42, 108
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr16:56200874-56201235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
32, 106
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr16:53941169-53940937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 110
               

               
Conread position:
               
42-268
               

               
Cow position:
               
chr16:16630825-16631061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr16:12490332-12490668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr16:33902123-33901793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 162
               

               
Conread position:
               
44-355
               

               
Cow position:
               
chr16:52631234-52631548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
79-308
               

               
Cow position:
               
chr16:54397374-54397144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
80-247
               

               
Cow position:
               
chr16:16579679-16579513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
82-257
               

               
Cow position:
               
chr16:48798604-48798432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
83-214
               

               
Cow position:
               
chr16:22717744-22717876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
87-254
               

               
Cow position:
               
chr16:31143491-31143657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr16:19936942-19936772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-263
               

               
Cow position:
               
chr16:38447716-38447544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-281
               

               
Cow position:
               
chr16:38443841-38443645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr16:37069777-37069510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr16:49822907-49823186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 131
               

               
Conread position:
               
89-281
               

               
Cow position:
               
chr16:32072418-32072610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
44, 95
               

               
Conread position:
               
89-369
               

               
Cow position:
               
chr16:7180359-7180626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
91-211
               

               
Cow position:
               
chr16:29619160-29619282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
106-355
               

               
Cow position:
               
chr16:22836444-22836200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
132-369
               

               
Cow position:
               
chr16:37013866-37014095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
133-357
               

               
Cow position:
               
chr16:41376075-41375851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
134-251
               

               
Cow position:
               
chr16:9911500-9911384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
142-369
               

               
Cow position:
               
chr16:190159-189935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
110, 52
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr17:23789924-23789637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr17:22840760-22841136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
37, 234
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chr17:44534867-44534660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
40-358
               

               
Cow position:
               
chr17:6214297-6214628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 186
               

               
Conread position:
               
42-355
               

               
Cow position:
               
chr17:21390670-21390353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr17:8119491-8119151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 183
               

               
Conread position:
               
44-192
               

               
Cow position:
               
chr17:30016886-30016727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
44-213
               

               
Cow position:
               
chr17:31831663-31831487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 66
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr17:25743105-25743371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 13
               

               
Conread position:
               
89-251
               

               
Cow position:
               
chr17:41924893-41924732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 122
               

               
Conread position:
               
106-362
               

               
Cow position:
               
chr17:21383651-21383903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 95
               

               
Conread position:
               
113-369
               

               
Cow position:
               
chr17:16391154-16390894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
117-257
               

               
Cow position:
               
chr17:3088475-3088616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
16, 94
               

               
Conread position:
               
121-369
               

               
Cow position:
               
chr17:1237680-1237431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
231-367
               

               
Cow position:
               
chr17:44534455-44534319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chr18:54137230-54137599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
46, 230
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr18:16359912-16359696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 146
               

               
Conread position:
               
4-262
               

               
Cow position:
               
chr18:29641567-29641287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
38, 200
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr18:44075458-44075084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr18:53967594-53967206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chr18:9188849-9188474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chr18:53533960-53533585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 223
               

               
Conread position:
               
40-342
               

               
Cow position:
               
chr18:49886042-49886355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 164
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr18:3506341-3506116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr18:55512239-55512465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
42-335
               

               
Cow position:
               
chr18:46092979-46092688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 64
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr18:4769796-4770138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr18:8339771-8339444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
43, 185
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr18:1783349-1783192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr18:34766668-34766827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr18:1095111-1095280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-264
               

               
Cow position:
               
chr18:50054879-50055057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-330
               

               
Cow position:
               
chr18:46094039-46093794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr18:28100532-28100267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr18:42287651-42287930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
88-343
               

               
Cow position:
               
chr18:8270592-8270337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
89-200
               

               
Cow position:
               
chr18:17308111-17308223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
89-328
               

               
Cow position:
               
chr18:32858259-32858033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
95-369
               

               
Cow position:
               
chr18:53804640-53804369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 123
               

               
Conread position:
               
105-357
               

               
Cow position:
               
chr18:13728738-13728986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
107-369
               

               
Cow position:
               
chr18:16405195-16404931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
114-369
               

               
Cow position:
               
chr18:15808428-15808176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
119-369
               

               
Cow position:
               
chr18:42818766-42819021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
142-356
               

               
Cow position:
               
chr18:44527902-44528120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr19:14538529-14538737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
4-292
               

               
Cow position:
               
chr19:9361010-9360721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr19:23812014-23812385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
44, 206
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr19:40118454-40118826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr19:5691997-5692386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
14, 234
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr19:28422508-28422120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr19:915838-915455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 230
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr19:12447896-12448273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
40-356
               

               
Cow position:
               
chr19:28434382-28434709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
44-216
               

               
Cow position:
               
chr19:17222360-17222187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
44-240
               

               
Cow position:
               
chr19:2789307-2789511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
46-357
               

               
Cow position:
               
chr19:51213279-51213592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
5, 160
               

               
Conread position:
               
87-237
               

               
Cow position:
               
chr19:9459116-9458974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr19:28663851-28664021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr19:37303143-37302974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr19:49806603-49806435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr19:8734009-8734277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
88-278
               

               
Cow position:
               
chr19:31629114-31629303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
90-281
               

               
Cow position:
               
chr19:13327896-13327707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
106-264
               

               
Cow position:
               
chr19:28423702-28423861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
108-369
               

               
Cow position:
               
chr19:30145332-30145071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
129-369
               

               
Cow position:
               
chr19:961747-961986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
5, 92
               

               
Conread position:
               
132-257
               

               
Cow position:
               
chr19:6157144-6157268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
144-343
               

               
Cow position:
               
chr19:26680356-26680158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr2:56299828-56300056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr2:57318032-57317776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
32, 230
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chr2:55498916-55499267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
40-247
               

               
Cow position:
               
chr2:34585727-34585944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 188
               

               
Conread position:
               
40-361
               

               
Cow position:
               
chr2:38839098-38839429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
41-265
               

               
Cow position:
               
chr2:61865458-61865693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 145
               

               
Conread position:
               
42-357
               

               
Cow position:
               
chr2:44344837-44344520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
44-355
               

               
Cow position:
               
chr2:35900168-35900486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
46-343
               

               
Cow position:
               
chr2:77519149-77518848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
48-257
               

               
Cow position:
               
chr2:39380227-39380019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
48-343
               

               
Cow position:
               
chr2:70183365-70183072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr2:2667629-2667509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-208
               

               
Cow position:
               
chr2:41437347-41437224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
87-227
               

               
Cow position:
               
chr2:64662597-64662736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
87-258
               

               
Cow position:
               
chr2:47531213-47531385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-335
               

               
Cow position:
               
chr2:47127751-47127501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr2:82140773-82140504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
89-215
               

               
Cow position:
               
chr2:31079315-31079186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
89-246
               

               
Cow position:
               
chr2:39758364-39758207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
89-281
               

               
Cow position:
               
chr2:9581180-9581369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
89-367
               

               
Cow position:
               
chr2:46999963-46999683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
90-345
               

               
Cow position:
               
chr2:26282522-26282782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
90-355
               

               
Cow position:
               
chr2:38902896-38903167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
91-236
               

               
Cow position:
               
chr2:57343559-57343416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
92-237
               

               
Cow position:
               
chr2:76045690-76045545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
92-369
               

               
Cow position:
               
chr2:39877799-39878067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
97-332
               

               
Cow position:
               
chr2:1481418-1481649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
98-348
               

               
Cow position:
               
chr2:49000398-49000646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
119-369
               

               
Cow position:
               
chr2:57647585-57647831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
216-368
               

               
Cow position:
               
chr2:2191877-2192027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr20:10993103-10993475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr20:26425713-26425502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
90, 58
               

               
Conread position:
               
42-263
               

               
Cow position:
               
chr20:36048556-36048776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
42-361
               

               
Cow position:
               
chr20:9432593-9432268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
36, 187
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr20:18388011-18387675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
87-213
               

               
Cow position:
               
chr20:20765785-20765913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr20:24148437-24148267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
87-285
               

               
Cow position:
               
chr20:38062309-38062507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr20:42738012-42737759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-345
               

               
Cow position:
               
chr20:18561892-18561630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-349
               

               
Cow position:
               
chr20:682781-683046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-351
               

               
Cow position:
               
chr20:31441484-31441218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
87-366
               

               
Cow position:
               
chr20:36657617-36657339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr20:31449768-31450053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
90-369
               

               
Cow position:
               
chr20:35724595-35724880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
43, 132
               

               
Conread position:
               
105-369
               

               
Cow position:
               
chr20:42109625-42109878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr21:22397510-22397872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
10-355
               

               
Cow position:
               
chr21:11121729-11122090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
18-188
               

               
Cow position:
               
chr21:48363874-48364046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
40-247
               

               
Cow position:
               
chr21:44545605-44545398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
40-355
               

               
Cow position:
               
chr21:48362487-48362810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
41-369
               

               
Cow position:
               
chr21:34729507-34729841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 128
               

               
Conread position:
               
42-221
               

               
Cow position:
               
chr21:32402569-32402756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr21:11253298-11253103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
42-346
               

               
Cow position:
               
chr21:8855793-8856111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
42-348
               

               
Cow position:
               
chr21:3392141-3391849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr21:13534517-13534182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
44-308
               

               
Cow position:
               
chr21:41537380-41537113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
45-369
               

               
Cow position:
               
chr21:48469993-48469672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
87-229
               

               
Cow position:
               
chr21:3383781-3383640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-237
               

               
Cow position:
               
chr21:15706818-15706968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr21:8404482-8404323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr21:44726102-44725932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-302
               

               
Cow position:
               
chr21:48306515-48306729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-343
               

               
Cow position:
               
chr21:29198294-29198550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
40, 113
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr21:13830118-13829838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
88-357
               

               
Cow position:
               
chr21:10736084-10735818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
88-369
               

               
Cow position:
               
chr21:15245224-15245496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
89-281
               

               
Cow position:
               
chr21:36868968-36868775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 108
               

               
Conread position:
               
89-334
               

               
Cow position:
               
chr21:32431725-32431971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
114-355
               

               
Cow position:
               
chr21:22198916-22198678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
119-354
               

               
Cow position:
               
chr21:11225947-11225714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
119-368
               

               
Cow position:
               
chr21:44561097-44561344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
138-323
               

               
Cow position:
               
chr21:369371-369192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
251-369
               

               
Cow position:
               
chr21:11253049-11252932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr22:31222272-31221885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 116
               

               
Conread position:
               
41-369
               

               
Cow position:
               
chr22:26145491-26145827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
37, 184
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr22:21237069-21236906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-368
               

               
Cow position:
               
chr22:4018961-4018687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
88-354
               

               
Cow position:
               
chr22:41959665-41959927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
89-369
               

               
Cow position:
               
chr22:35537368-35537647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
120-369
               

               
Cow position:
               
chr22:26852780-26853024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
12, 72
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr22:47737246-47737022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
4-330
               

               
Cow position:
               
chr23:20558427-20558085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 199
               

               
Conread position:
               
40-369
               

               
Cow position:
               
chr23:7747564-7747231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
42-225
               

               
Cow position:
               
chr23:6087399-6087592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
42-360
               

               
Cow position:
               
chr23:8760897-8760579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
42-368
               

               
Cow position:
               
chr23:36617252-36617583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
44-343
               

               
Cow position:
               
chr23:37091609-37091299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 179
               

               
Conread position:
               
84-355
               

               
Cow position:
               
chr23:4590711-4590981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
49, 134
               

               
Conread position:
               
87-256
               

               
Cow position:
               
chr23:9310650-9310482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr23:37098032-37098203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-343
               

               
Cow position:
               
chr23:35969123-35968866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr23:5521857-5521587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
132-369
               

               
Cow position:
               
chr23:9516087-9516322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
151-353
               

               
Cow position:
               
chr23:3538198-3538407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
210-369
               

               
Cow position:
               
chr23:20948537-20948377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr24:19664713-19664348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr24:20990692-20991059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
38, 215
               

               
Conread position:
               
4-367
               

               
Cow position:
               
chr24:265247-265612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
44, 198
               

               
Conread position:
               
6-211
               

               
Cow position:
               
chr24:30693483-30693265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 106
               

               
Conread position:
               
40-249
               

               
Cow position:
               
chr24:19652877-19652657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
37, 188
               

               
Conread position:
               
42-367
               

               
Cow position:
               
chr24:20261389-20261717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
35, 183
               

               
Conread position:
               
87-345
               

               
Cow position:
               
chr24:41983953-41984203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr24:16213232-16213486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr24:16874063-16873796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
90-356
               

               
Cow position:
               
chr24:28420452-28420716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
101-358
               

               
Cow position:
               
chr24:24658020-24657760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
233-356
               

               
Cow position:
               
chr24:24571302-24571181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr25:1591412-1591131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
4-351
               

               
Cow position:
               
chr25:20480558-20480195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
4-354
               

               
Cow position:
               
chr25:21665036-21664667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr25:1780956-1781326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 112
               

               
Conread position:
               
6-369
               

               
Cow position:
               
chr25:23567148-23566779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
7-369
               

               
Cow position:
               
chr25:3735822-3735441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 111
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr25:10167890-10168115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
7, 67
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr25:15970615-15970281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
44-366
               

               
Cow position:
               
chr25:22129728-22130055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
48-245
               

               
Cow position:
               
chr25:30065890-30065681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
48-355
               

               
Cow position:
               
chr25:27375863-27375557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
52-368
               

               
Cow position:
               
chr25:38162811-38162497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
84, 23
               

               
Conread position:
               
87-227
               

               
Cow position:
               
chr25:15917465-15917602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr25:1849395-1849225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr25:21293492-21293755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-358
               

               
Cow position:
               
chr25:25952191-25951915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
88-237
               

               
Cow position:
               
chr25:14548565-14548713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
97-355
               

               
Cow position:
               
chr25:4228887-4228645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
114-369
               

               
Cow position:
               
chr25:31772-31510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 207
               

               
Conread position:
               
117-251
               

               
Cow position:
               
chr25:5780365-5780499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr26:12267232-12267588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 114
               

               
Conread position:
               
40-367
               

               
Cow position:
               
chr26:29004230-29003901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
87-200
               

               
Cow position:
               
chr26:9848236-9848350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr26:20865940-20865819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
87-225
               

               
Cow position:
               
chr26:10326975-10326838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-246
               

               
Cow position:
               
chr26:32076863-32077021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr26:24985180-24985000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
100-247
               

               
Cow position:
               
chr26:12395283-12395135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
32, 118
               

               
Conread position:
               
119-369
               

               
Cow position:
               
chr26:8222834-8222583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
131-369
               

               
Cow position:
               
chr26:20858286-20858047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 66
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr27:25166900-25167184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 210
               

               
Conread position:
               
40-369
               

               
Cow position:
               
chr27:13309556-13309247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
40-369
               

               
Cow position:
               
chr27:25448254-25448585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr27:26466386-26466093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
25, 174
               

               
Conread position:
               
84-369
               

               
Cow position:
               
chr27:11601718-11602013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 113
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr27:30484602-30484772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-358
               

               
Cow position:
               
chr27:30983116-30982848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
88-367
               

               
Cow position:
               
chr27:29642589-29642322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
90-342
               

               
Cow position:
               
chr27:29667130-29666873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
123-367
               

               
Cow position:
               
chr27:21120955-21120713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr28:20927025-20926797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr28:8426082-8425812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr28:518387-518009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 238
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr28:22005594-22005240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
40, 211
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr28:17595858-17595519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
50-354
               

               
Cow position:
               
chr28:13413173-13413487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
87-249
               

               
Cow position:
               
chr28:16528814-16528658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr28:3679077-3678807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
89-357
               

               
Cow position:
               
chr28:8639499-8639783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
142-369
               

               
Cow position:
               
chr28:22837451-22837213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 165
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr29:10289379-10289748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 104
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr29:5224719-5224338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 118
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr29:19651721-19651339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 228
               

               
Conread position:
               
34-206
               

               
Cow position:
               
chr29:565438-565612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
40-343
               

               
Cow position:
               
chr29:11282945-11282635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
42-244
               

               
Cow position:
               
chr29:25914609-25914822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
42-368
               

               
Cow position:
               
chr29:31843366-31843700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr29:13501685-13501352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
50-275
               

               
Cow position:
               
chr29:33648777-33648540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 58
               

               
Conread position:
               
72-231
               

               
Cow position:
               
chr29:3104202-3104041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
72-231
               

               
Cow position:
               
chr29:3143745-3143584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
87-246
               

               
Cow position:
               
chr29:8790392-8790545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr29:3550661-3550502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr29:31650097-31649926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-328
               

               
Cow position:
               
chr29:4242565-4242326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr29:22784769-22784498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr29:30241758-30241485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 131
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr29:37071698-37071424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr29:19662699-19662426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
97-275
               

               
Cow position:
               
chr29:24045181-24045357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
97-336
               

               
Cow position:
               
chr29:349435-349674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
98-215
               

               
Cow position:
               
chr29:28983037-28983157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
99-359
               

               
Cow position:
               
chr29:30207955-30208214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
106-252
               

               
Cow position:
               
chr29:40057567-40057714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
107-311
               

               
Cow position:
               
chr29:10662328-10662125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 110
               

               
Conread position:
               
148-355
               

               
Cow position:
               
chr29:36176035-36175832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
158-281
               

               
Cow position:
               
chr29:4769586-4769706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chr3:5164043-5163679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 209
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr3:67818182-67817807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 118
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr3:5449142-5449361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 112
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr3:67459971-67460210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr3:7851624-7851864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
42, 226
               

               
Conread position:
               
4-234
               

               
Cow position:
               
chr3:34890245-34890494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 175
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr3:36005389-36005771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 115
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr3:7827672-7827289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
38, 231
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr3:30383592-30383203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
40-215
               

               
Cow position:
               
chr3:34227917-34228104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr3:34210925-34211144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
42-267
               

               
Cow position:
               
chr3:23088133-23088366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 181
               

               
Conread position:
               
42-343
               

               
Cow position:
               
chr3:2672572-2672885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 129
               

               
Conread position:
               
42-355
               

               
Cow position:
               
chr3:25576688-25576365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
44-277
               

               
Cow position:
               
chr3:42315839-42316077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
44-369
               

               
Cow position:
               
chr3:12769551-12769216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
48-349
               

               
Cow position:
               
chr3:52399864-52399568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
78-355
               

               
Cow position:
               
chr3:3400328-3400610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
11, 121
               

               
Conread position:
               
83-350
               

               
Cow position:
               
chr3:27559376-27559108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
84-198
               

               
Cow position:
               
chr3:7838330-7838214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
84-262
               

               
Cow position:
               
chr3:72580781-72580602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
50, 108
               

               
Conread position:
               
87-200
               

               
Cow position:
               
chr3:523960-524076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr3:41038323-41038159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr3:5427454-5427285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr3:61213132-61212962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr3:7775624-7775452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-300
               

               
Cow position:
               
chr3:21714283-21714067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-354
               

               
Cow position:
               
chr3:74798475-74798753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr3:24413552-24413286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr3:313188-312911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr3:7820856-7820581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr3:61964352-61964086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
88-319
               

               
Cow position:
               
chr3:23430049-23430277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
91-202
               

               
Cow position:
               
chr3:75272708-75272821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
91-369
               

               
Cow position:
               
chr3:29307150-29306884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
190, 31
               

               
Conread position:
               
106-369
               

               
Cow position:
               
chr3:5158152-5157884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
23, 112
               

               
Conread position:
               
117-306
               

               
Cow position:
               
chr3:38305996-38306186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
119-369
               

               
Cow position:
               
chr3:2657252-2657001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
137-369
               

               
Cow position:
               
chr3:25262320-25262090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chr4:21000879-21001121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr4:57473459-57473182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
43, 212
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr4:5040021-5039646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr4:39692519-39692802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 212
               

               
Conread position:
               
6-353
               

               
Cow position:
               
chr4:11742454-11742821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 225
               

               
Conread position:
               
38-226
               

               
Cow position:
               
chr4:43039643-43039448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
40-260
               

               
Cow position:
               
chr4:53384359-53384592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
42-368
               

               
Cow position:
               
chr4:28213642-28213978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 182
               

               
Conread position:
               
82-353
               

               
Cow position:
               
chr4:62324093-62323830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 50
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr4:25945229-25945061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr4:59859547-59859366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-356
               

               
Cow position:
               
chr4:51245580-51245309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr4:60387913-60387643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr4:53802657-53802383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr4:7485228-7484950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr4:39687070-39686788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
89-267
               

               
Cow position:
               
chr4:29027867-29027691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
106-329
               

               
Cow position:
               
chr4:5253364-5253132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
119-350
               

               
Cow position:
               
chr4:20325443-20325216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
127-355
               

               
Cow position:
               
chr4:66312851-66312624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
184-355
               

               
Cow position:
               
chr4:64868807-64868637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr5:47438835-47438570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr5:44113821-44113520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
40, 191
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr5:40731581-40731767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr5:2023916-2023703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr5:11670927-11671289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
29, 197
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr5:62033061-62032828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
40-361
               

               
Cow position:
               
chr5:10037882-10038217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
40-369
               

               
Cow position:
               
chr5:43094672-43095013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
41-193
               

               
Cow position:
               
chr5:60196635-60196789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
42-201
               

               
Cow position:
               
chr5:12276401-12276231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
42-355
               

               
Cow position:
               
chr5:44648485-44648160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
83-366
               

               
Cow position:
               
chr5:38590564-38590288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
87-196
               

               
Cow position:
               
chr5:45694710-45694822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-228
               

               
Cow position:
               
chr5:67479450-67479591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr5:52001725-52001883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr5:34964380-34964538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr5:55193867-55194036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-281
               

               
Cow position:
               
chr5:16368306-16368100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr5:47961596-47961379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr5:5918782-5918510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr5:34502859-34503123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-368
               

               
Cow position:
               
chr5:75451063-75451346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr5:2216822-2217098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
46, 127
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr5:15754428-15754713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr5:52404143-52404437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 127
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr5:65206518-65206795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr5:68086887-68087168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr5:69711269-69711551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
45, 98
               

               
Conread position:
               
99-368
               

               
Cow position:
               
chr5:12550365-12550634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
106-324
               

               
Cow position:
               
chr5:60215990-60216209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
117-351
               

               
Cow position:
               
chr5:56810913-56810676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chr5:58350254-58350475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
7, 93
               

               
Conread position:
               
119-354
               

               
Cow position:
               
chr5:7797106-7796873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
2-286
               

               
Cow position:
               
chr6:11096520-11096812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr6:20397141-20396899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
40, 212
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr6:47866357-47866734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 41
               

               
Conread position:
               
6-193
               

               
Cow position:
               
chr6:52441539-52441739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chr6:52439814-52439461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
40-283
               

               
Cow position:
               
chr6:58621719-58621974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
40-355
               

               
Cow position:
               
chr6:18405423-18405742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
40-361
               

               
Cow position:
               
chr6:541403-541091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 104
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr6:41284304-41284530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
42-352
               

               
Cow position:
               
chr6:8812741-8813066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
42-355
               

               
Cow position:
               
chr6:45553445-45553119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr6:11299039-11298703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 158
               

               
Conread position:
               
86-369
               

               
Cow position:
               
chr6:55022214-55022497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-293
               

               
Cow position:
               
chr6:32921603-32921405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr6:1565986-1565718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr6:9518786-9519069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr6:11073273-11073555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr6:15594390-15594118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
88-343
               

               
Cow position:
               
chr6:48777929-48778172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
91-221
               

               
Cow position:
               
chr6:39768132-39768006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
112-368
               

               
Cow position:
               
chr6:59920313-59920553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
119-302
               

               
Cow position:
               
chr6:2854196-2854013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
142-365
               

               
Cow position:
               
chr6:48019444-48019227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
140, 39
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr7:64151411-64151755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 115
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chr7:4588262-4588530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
41, 228
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr7:62048165-62047873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr7:11137017-11137363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
44, 211
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr7:52568156-52568525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 117
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr7:21937665-21938031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
44, 228
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr7:27335186-27335539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
42, 113
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chr7:51338281-51337915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
42, 228
               

               
Conread position:
               
40-254
               

               
Cow position:
               
chr7:33600203-33599979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
40-275
               

               
Cow position:
               
chr7:40194916-40194681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
40-369
               

               
Cow position:
               
chr7:43862293-43861976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
42-356
               

               
Cow position:
               
chr7:41551141-41551467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 166
               

               
Conread position:
               
44-198
               

               
Cow position:
               
chr7:15434041-15434206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
87-208
               

               
Cow position:
               
chr7:47943773-47943896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-246
               

               
Cow position:
               
chr7:68949314-68949156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr7:15674403-15674562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
87-257
               

               
Cow position:
               
chr7:33433965-33433795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr7:25967376-25967644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr7:63967293-63967560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr7:4257116-4256844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
89-355
               

               
Cow position:
               
chr7:11847648-11847395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
89-356
               

               
Cow position:
               
chr7:20637665-20637415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
89-369
               

               
Cow position:
               
chr7:35030475-35030753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
106-351
               

               
Cow position:
               
chr7:62017133-62017380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
147-275
               

               
Cow position:
               
chr7:34889349-34889477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
105, 66
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr8:39080957-39081272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
44, 112
               

               
Conread position:
               
4-331
               

               
Cow position:
               
chr8:48708179-48708531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
38, 221
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chr8:51945273-51944931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 157
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr8:36164125-36164499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr8:54010106-54010477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 212
               

               
Conread position:
               
6-263
               

               
Cow position:
               
chr8:52006678-52006400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
42, 114
               

               
Conread position:
               
40-355
               

               
Cow position:
               
chr8:17146146-17146479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
40-364
               

               
Cow position:
               
chr8:15624847-15625183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
42-251
               

               
Cow position:
               
chr8:5651800-5652019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
42-308
               

               
Cow position:
               
chr8:5441049-5440771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chr8:43464195-43463859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
43-355
               

               
Cow position:
               
chr8:35907890-35907565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 128
               

               
Conread position:
               
87-252
               

               
Cow position:
               
chr8:841159-840994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
87-266
               

               
Cow position:
               
chr8:6334876-6335054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
87-285
               

               
Cow position:
               
chr8:28279305-28279499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
87-335
               

               
Cow position:
               
chr8:38260053-38260292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr8:33522692-33522953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr8:37974996-37975263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr8:61038544-61038275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
87-356
               

               
Cow position:
               
chr8:6170646-6170374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-358
               

               
Cow position:
               
chr8:58286804-58286534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr8:9075819-9076094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
73, 14
               

               
Conread position:
               
90-368
               

               
Cow position:
               
chr8:36937035-36936763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
192, 10
               

               
Conread position:
               
119-356
               

               
Cow position:
               
chr8:21988209-21988446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
124-369
               

               
Cow position:
               
chr8:36273083-36272844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
131-355
               

               
Cow position:
               
chr8:36267605-36267379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 84
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr9:9535726-9535990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 120
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr9:29098013-29097682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr9:34174300-34174661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
38, 211
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr9:3497945-3497573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 189
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr9:51888904-51889179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 109
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chr9:6598945-6599331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 215
               

               
Conread position:
               
40-367
               

               
Cow position:
               
chr9:20709395-20709059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 184
               

               
Conread position:
               
42-268
               

               
Cow position:
               
chr9:2604362-2604601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
48-251
               

               
Cow position:
               
chr9:54361097-54360892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
48-285
               

               
Cow position:
               
chr9:44403687-44403439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 180
               

               
Conread position:
               
84-257
               

               
Cow position:
               
chr9:39590443-39590616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr9:9584389-9584232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
87-285
               

               
Cow position:
               
chr9:49371207-49371005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
87-286
               

               
Cow position:
               
chr9:10726524-10726336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-340
               

               
Cow position:
               
chr9:8759956-8760215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-366
               

               
Cow position:
               
chr9:50215367-50215097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chr9:58397252-58397534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
106-257
               

               
Cow position:
               
chr9:23382940-23382788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 105
               

               
Conread position:
               
106-369
               

               
Cow position:
               
chr9:56283770-56284038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 114
               

               
Conread position:
               
148-356
               

               
Cow position:
               
chr9:8863197-8863407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chrX:31140313-31140078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
4-262
               

               
Cow position:
               
chrX:21247902-21248180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
38, 230
               

               
Conread position:
               
6-369
               

               
Cow position:
               
chrX:113950-114336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 117
               

               
Conread position:
               
33-369
               

               
Cow position:
               
chrX:29917418-29917079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
40-336
               

               
Cow position:
               
chrX:25257156-25257455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
40-369
               

               
Cow position:
               
chrX:1751391-1751727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
42-352
               

               
Cow position:
               
chrX:278009-278328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
42-357
               

               
Cow position:
               
chrX:18968584-18968905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 164
               

               
Conread position:
               
42-367
               

               
Cow position:
               
chrX:25950124-25949790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
42-369
               

               
Cow position:
               
chrX:19121616-19121285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chrX:26594814-26594973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
87-369
               

               
Cow position:
               
chrX:26592292-26592572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
88-257
               

               
Cow position:
               
chrX:26801051-26800894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
88-264
               

               
Cow position:
               
chrX:5890001-5889825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
127-356
               

               
Cow position:
               
chrX:41754694-41754922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 6
               

               
Conread position:
               
213-369
               

               
Cow position:
               
chrX:21248246-21248402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
217-369
               

               
Cow position:
               
chrX:39266339-39266495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
218-361
               

               
Cow position:
               
chrX:26585375-26585229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
34, 0