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Cow genome map

           
Conread name:
           
Pig2-78F22
        

               
Conread position:
               
125-588
               

               
Cow position:
               
chr10:1340525-1340044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 431
               

               
Conread position:
               
127-443
               

               
Cow position:
               
chr10:10154426-10154120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
166, 72
               

               
Conread position:
               
127-526
               

               
Cow position:
               
chr10:12158743-12159154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 62
               

               
Conread position:
               
128-416
               

               
Cow position:
               
chr10:7477238-7477538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
119, 140
               

               
Conread position:
               
128-427
               

               
Cow position:
               
chr10:10425401-10425097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
117, 97
               

               
Conread position:
               
128-445
               

               
Cow position:
               
chr10:9045682-9045357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
130, 275
               

               
Conread position:
               
128-577
               

               
Cow position:
               
chr10:55376404-55375952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
146, 70
               

               
Conread position:
               
128-585
               

               
Cow position:
               
chr10:25950569-25951020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 136
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr10:69253392-69252919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 60
               

               
Conread position:
               
129-452
               

               
Cow position:
               
chr10:23918398-23918737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
130, 178
               

               
Conread position:
               
129-530
               

               
Cow position:
               
chr10:45955130-45954722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 165
               

               
Conread position:
               
130-422
               

               
Cow position:
               
chr10:68887096-68886812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
131-587
               

               
Cow position:
               
chr10:65689511-65689033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 65
               

               
Conread position:
               
133-469
               

               
Cow position:
               
chr10:38832898-38832546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
140-587
               

               
Cow position:
               
chr10:55378664-55378207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
111, 59
               

               
Conread position:
               
170-443
               

               
Cow position:
               
chr10:28981766-28982042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
62, 66
               

               
Conread position:
               
190-587
               

               
Cow position:
               
chr10:49562175-49562605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
190-588
               

               
Cow position:
               
chr10:10687574-10687162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
192-537
               

               
Cow position:
               
chr10:51438727-51438376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
104, 15
               

               
Conread position:
               
194-476
               

               
Cow position:
               
chr10:17142329-17142027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 39
               

               
Conread position:
               
105-378
               

               
Cow position:
               
chr11:25683508-25683226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
146, 23
               

               
Conread position:
               
125-588
               

               
Cow position:
               
chr11:78562702-78562270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
363, 34
               

               
Conread position:
               
127-410
               

               
Cow position:
               
chr11:20495852-20496144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
114, 72
               

               
Conread position:
               
127-461
               

               
Cow position:
               
chr11:50871099-50871448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
127-585
               

               
Cow position:
               
chr11:52588637-52589092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
135, 90
               

               
Conread position:
               
128-393
               

               
Cow position:
               
chr11:42044842-42044567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
128-403
               

               
Cow position:
               
chr11:73893579-73893869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
128-446
               

               
Cow position:
               
chr11:8111873-8112195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
121, 72
               

               
Conread position:
               
128-525
               

               
Cow position:
               
chr11:11681069-11681486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
124, 202
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr11:62201671-62202152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr11:62657038-62656582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr11:26656599-26656136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 71
               

               
Conread position:
               
130-317
               

               
Cow position:
               
chr11:65439247-65439057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
134, 66
               

               
Conread position:
               
130-453
               

               
Cow position:
               
chr11:53518342-53518004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
130, 96
               

               
Conread position:
               
130-561
               

               
Cow position:
               
chr11:28787841-28787389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
132-588
               

               
Cow position:
               
chr11:50023374-50023846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 284
               

               
Conread position:
               
133-444
               

               
Cow position:
               
chr11:27805614-27805944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 312
               

               
Conread position:
               
136-588
               

               
Cow position:
               
chr11:49018764-49018309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
42, 153
               

               
Conread position:
               
137-588
               

               
Cow position:
               
chr11:8581877-8582354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 217
               

               
Conread position:
               
142-442
               

               
Cow position:
               
chr11:73394932-73394642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 85
               

               
Conread position:
               
187-398
               

               
Cow position:
               
chr11:52203268-52203062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
187-584
               

               
Cow position:
               
chr11:34657863-34657458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
196-363
               

               
Cow position:
               
chr11:78185779-78185951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 66
               

               
Conread position:
               
200-426
               

               
Cow position:
               
chr11:56031334-56031113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
64, 73
               

               
Conread position:
               
201-588
               

               
Cow position:
               
chr11:21478514-21478116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
51, 106
               

               
Conread position:
               
105-563
               

               
Cow position:
               
chr12:6911683-6911221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
127-588
               

               
Cow position:
               
chr12:22213388-22213864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
128-469
               

               
Cow position:
               
chr12:40180544-40180887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
128-484
               

               
Cow position:
               
chr12:12311124-12311483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
129, 31
               

               
Conread position:
               
128-527
               

               
Cow position:
               
chr12:48451170-48450765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
120, 179
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr12:42194466-42194022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
169, 70
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr12:13622268-13621798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr12:14736695-14736235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
169, 71
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr12:18002864-18003335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 111
               

               
Conread position:
               
130-364
               

               
Cow position:
               
chr12:22130440-22130690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
121, 69
               

               
Conread position:
               
130-588
               

               
Cow position:
               
chr12:15830696-15831173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
132-462
               

               
Cow position:
               
chr12:20463170-20463505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
134-586
               

               
Cow position:
               
chr12:40248670-40248198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 186
               

               
Conread position:
               
197-476
               

               
Cow position:
               
chr12:8874374-8874666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 122
               

               
Conread position:
               
198-415
               

               
Cow position:
               
chr12:38825538-38825768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
199-588
               

               
Cow position:
               
chr12:32975572-32975969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
54, 251
               

               
Conread position:
               
199-589
               

               
Cow position:
               
chr12:37114166-37114566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
212-468
               

               
Cow position:
               
chr12:40860204-40859952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
123-450
               

               
Cow position:
               
chr13:13533143-13532803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
127-576
               

               
Cow position:
               
chr13:57970168-57970608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
174, 55
               

               
Conread position:
               
127-588
               

               
Cow position:
               
chr13:16988426-16988896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
128-423
               

               
Cow position:
               
chr13:14032560-14032867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
128-445
               

               
Cow position:
               
chr13:12570108-12570420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 103
               

               
Conread position:
               
128-455
               

               
Cow position:
               
chr13:12684977-12685321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
120, 69
               

               
Conread position:
               
128-462
               

               
Cow position:
               
chr13:46448791-46449124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
128-542
               

               
Cow position:
               
chr13:14725119-14724710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 94
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr13:46996442-46996910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr13:44701148-44700672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 72
               

               
Conread position:
               
131-588
               

               
Cow position:
               
chr13:37347990-37347524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 66
               

               
Conread position:
               
132-587
               

               
Cow position:
               
chr13:58343963-58343506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 160
               

               
Conread position:
               
135-422
               

               
Cow position:
               
chr13:36404166-36403878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 110
               

               
Conread position:
               
140-451
               

               
Cow position:
               
chr13:15662079-15662399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
111, 10
               

               
Conread position:
               
147-588
               

               
Cow position:
               
chr13:51440077-51440539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 249
               

               
Conread position:
               
190-469
               

               
Cow position:
               
chr13:40591689-40591392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
190-529
               

               
Cow position:
               
chr13:47875813-47876143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
190-589
               

               
Cow position:
               
chr13:51436133-51436532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 78
               

               
Conread position:
               
191-545
               

               
Cow position:
               
chr13:50790598-50790228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
106, 77
               

               
Conread position:
               
194-587
               

               
Cow position:
               
chr13:11688292-11687893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
199-533
               

               
Cow position:
               
chr13:4185249-4185598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 105
               

               
Conread position:
               
128-582
               

               
Cow position:
               
chr14:19271624-19272083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
120, 71
               

               
Conread position:
               
128-583
               

               
Cow position:
               
chr14:33184414-33183938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 62
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr14:43289363-43289847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
130-542
               

               
Cow position:
               
chr14:14912559-14912149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
55, 99
               

               
Conread position:
               
130-586
               

               
Cow position:
               
chr14:41480737-41480287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 53
               

               
Conread position:
               
190-434
               

               
Cow position:
               
chr14:39399641-39399895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
50, 77
               

               
Conread position:
               
190-588
               

               
Cow position:
               
chr14:21047619-21048019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 9
               

               
Conread position:
               
192-467
               

               
Cow position:
               
chr14:24146328-24146615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
125-588
               

               
Cow position:
               
chr15:19858575-19859061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
127-586
               

               
Cow position:
               
chr15:40203885-40203409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
127-587
               

               
Cow position:
               
chr15:37915444-37915914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
128-422
               

               
Cow position:
               
chr15:9115785-9116089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
128-451
               

               
Cow position:
               
chr15:39554910-39555245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 173
               

               
Conread position:
               
128-453
               

               
Cow position:
               
chr15:46100089-46099762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
130, 167
               

               
Conread position:
               
128-558
               

               
Cow position:
               
chr15:47060000-47060435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 91
               

               
Conread position:
               
128-584
               

               
Cow position:
               
chr15:22728358-22727883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
122, 66
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr15:19326099-19326573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
129-563
               

               
Cow position:
               
chr15:10785067-10784626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
130-404
               

               
Cow position:
               
chr15:8361160-8360879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
120, 56
               

               
Conread position:
               
131-386
               

               
Cow position:
               
chr15:44012696-44012432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
115, 96
               

               
Conread position:
               
141-448
               

               
Cow position:
               
chr15:46860062-46860385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
8, 51
               

               
Conread position:
               
141-587
               

               
Cow position:
               
chr15:37461785-37461326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 95
               

               
Conread position:
               
162-413
               

               
Cow position:
               
chr15:24779889-24780141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
173-563
               

               
Cow position:
               
chr15:27779849-27780251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
175-415
               

               
Cow position:
               
chr15:38751449-38751203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
190-588
               

               
Cow position:
               
chr15:23103757-23103344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 289
               

               
Conread position:
               
190-588
               

               
Cow position:
               
chr15:26148930-26148535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
56, 110
               

               
Conread position:
               
192-469
               

               
Cow position:
               
chr15:35159517-35159230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
73, 5
               

               
Conread position:
               
194-382
               

               
Cow position:
               
chr15:15211673-15211867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 113
               

               
Conread position:
               
195-522
               

               
Cow position:
               
chr15:22729759-22730096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
112, 53
               

               
Conread position:
               
198-588
               

               
Cow position:
               
chr15:15030659-15030272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
48, 119
               

               
Conread position:
               
95-536
               

               
Cow position:
               
chr16:16844537-16844979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
128-436
               

               
Cow position:
               
chr16:37345923-37346244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
115, 311
               

               
Conread position:
               
128-465
               

               
Cow position:
               
chr16:7002770-7003108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
163, 134
               

               
Conread position:
               
128-467
               

               
Cow position:
               
chr16:14329340-14328992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 277
               

               
Conread position:
               
128-527
               

               
Cow position:
               
chr16:11080771-11080349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
130, 155
               

               
Conread position:
               
128-538
               

               
Cow position:
               
chr16:24759861-24759455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 47
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr16:17873775-17874251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 72
               

               
Conread position:
               
129-393
               

               
Cow position:
               
chr16:38549927-38550190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
129-469
               

               
Cow position:
               
chr16:29357210-29357554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 70
               

               
Conread position:
               
130-415
               

               
Cow position:
               
chr16:22375692-22375983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
112, 69
               

               
Conread position:
               
130-451
               

               
Cow position:
               
chr16:10597444-10597774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
130-578
               

               
Cow position:
               
chr16:52403817-52403360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
115, 56
               

               
Conread position:
               
136-589
               

               
Cow position:
               
chr16:38347114-38347573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
191-412
               

               
Cow position:
               
chr16:53764403-53764619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 74
               

               
Conread position:
               
192-470
               

               
Cow position:
               
chr16:45648497-45648784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 7
               

               
Conread position:
               
196-589
               

               
Cow position:
               
chr16:870886-871292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
55, 344
               

               
Conread position:
               
199-589
               

               
Cow position:
               
chr16:14088785-14089172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 108
               

               
Conread position:
               
127-361
               

               
Cow position:
               
chr17:27544260-27544492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
173, 72
               

               
Conread position:
               
127-549
               

               
Cow position:
               
chr17:19907175-19906759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 105
               

               
Conread position:
               
127-557
               

               
Cow position:
               
chr17:21493648-21494100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
126, 186
               

               
Conread position:
               
128-448
               

               
Cow position:
               
chr17:38949359-38949032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
132, 27
               

               
Conread position:
               
128-475
               

               
Cow position:
               
chr17:40080529-40080173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
109, 72
               

               
Conread position:
               
128-515
               

               
Cow position:
               
chr17:22824751-22825146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
132, 33
               

               
Conread position:
               
128-543
               

               
Cow position:
               
chr17:40626963-40627382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
128-554
               

               
Cow position:
               
chr17:26290661-26290202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
135, 21
               

               
Conread position:
               
128-557
               

               
Cow position:
               
chr17:32513656-32514090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr17:30142820-30143306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 347
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr17:12221146-12220662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 453
               

               
Conread position:
               
129-420
               

               
Cow position:
               
chr17:35211331-35211038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
119, 25
               

               
Conread position:
               
129-588
               

               
Cow position:
               
chr17:35219226-35219695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
132-588
               

               
Cow position:
               
chr17:29919478-29919926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
159, 85
               

               
Conread position:
               
170-555
               

               
Cow position:
               
chr17:43629138-43629521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
81, 188
               

               
Conread position:
               
187-587
               

               
Cow position:
               
chr17:11746971-11747368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
64, 161
               

               
Conread position:
               
199-589
               

               
Cow position:
               
chr17:32133561-32133160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
117-340
               

               
Cow position:
               
chr18:30393394-30393609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
218, 9
               

               
Conread position:
               
128-373
               

               
Cow position:
               
chr18:16793830-16793577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
128-383
               

               
Cow position:
               
chr18:24831973-24831703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 62
               

               
Conread position:
               
128-429
               

               
Cow position:
               
chr18:31984059-31983744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 104
               

               
Conread position:
               
128-443
               

               
Cow position:
               
chr18:11385329-11384999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
130, 248
               

               
Conread position:
               
128-450
               

               
Cow position:
               
chr18:6741407-6741742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
102, 72
               

               
Conread position:
               
128-583
               

               
Cow position:
               
chr18:23873346-23872880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr18:48530894-48530420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 17
               

               
Conread position:
               
134-450
               

               
Cow position:
               
chr18:23331205-23330890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
145-588
               

               
Cow position:
               
chr18:12250031-12249588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
251, 20
               

               
Conread position:
               
187-587
               

               
Cow position:
               
chr18:42505120-42505524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
192-585
               

               
Cow position:
               
chr18:52910939-52910516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 300
               

               
Conread position:
               
127-484
               

               
Cow position:
               
chr19:34693338-34692975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 75
               

               
Conread position:
               
127-573
               

               
Cow position:
               
chr19:54844120-54844590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
139, 121
               

               
Conread position:
               
128-389
               

               
Cow position:
               
chr19:4594312-4594036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 104
               

               
Conread position:
               
128-419
               

               
Cow position:
               
chr19:41850510-41850219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
139, 82
               

               
Conread position:
               
128-545
               

               
Cow position:
               
chr19:46900075-46899657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 69
               

               
Conread position:
               
128-585
               

               
Cow position:
               
chr19:5862378-5862829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 129
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr19:18368189-18368663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
121, 53
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr19:29090266-29089793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 206
               

               
Conread position:
               
128-589
               

               
Cow position:
               
chr19:16135552-16136026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 58
               

               
Conread position:
               
132-399
               

               
Cow position:
               
chr19:21343179-21342892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
132-488
               

               
Cow position:
               
chr19:14272173-14271825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
133-373
               

               
Cow position:
               
chr19:46643270-46643519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
118, 149
               

               
Conread position:
               
170-539
               

               
Cow position:
               
chr19:16186326-16186705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 127
               

               
Conread position:
               
190-589
               

               
Cow position:
               
chr19:17802059-17801658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 230
               

               
Conread position:
               
190-589
               

               
Cow position:
               
chr19:33642435-33642019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 215
               

               
Conread position:
               
191-586
               

               
Cow position:
               
chr19:21201568-21201166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 109
               

               
Conread position:
               
105-266
               

               
Cow position:
               
chr2:79905025-79905185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
146, 8
               

               
Conread position:
               
127-589
               

               
Cow position:
               
chr2:11678732-11679198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
138, 112
               

               
Conread position:
               
128-362
               

               
Cow position:
               
chr2:8713536-8713301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 181
               

               
Conread position:
               
128-367
               

               
Cow position:
               
chr2:73171272-73171526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
128-374
               

               
Cow position:
               
chr2:26081675-26081416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
128-444
               

               
Cow position:
               
chr2:19748078-19748407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 205
               

               
Conread position:
               
128-445
               

               
Cow position:
               
chr2:59539459-59539136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 26
               

               
Conread position:
               
128-474
               

               
Cow position:
               
chr2:77370061-77369703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
98, 80
               

               
Conread position:
               
128-484
               

               
Cow position:
               
chr2:71511575-71511200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
138, 37
               

               
Conread position:
               
128-551
               

               
Cow position:
               
chr2:747704-748117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
128-579
               

               
Cow position:
               
chr2:23006036-23006480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr2:74491804-74492248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
152, 94
               

               
Conread position:
               
129-587
               

               
Cow position:
               
chr2:39226945-39226469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
129-588
               

               
Cow position:
               
chr2:649065-648604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
71, 90
               

               
Conread position:
               
130-381
               

               
Cow position:
               
chr2:12377017-12377279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
117, 172
               

               
Conread position:
               
130-588
               

               
Cow position:
               
chr2:81645135-81645606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
135-455
               

               
Cow position:
               
chr2:51385379-51385708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
161-586
               

               
Cow position:
               
chr2:59595896-59595455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
170-588
               

               
Cow position:
               
chr2:82472341-82472762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
190-420
               

               
Cow position:
               
chr2:33280282-33280040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
191-499
               

               
Cow position:
               
chr2:26035067-26034742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 8
               

               
Conread position:
               
192-584
               

               
Cow position:
               
chr2:8795890-8796293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 11
               

               
Conread position:
               
199-524
               

               
Cow position:
               
chr2:38163684-38164032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
200-486
               

               
Cow position:
               
chr2:61680171-61679871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 215
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr20:3160407-3159932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr20:12140937-12141409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 157
               

               
Conread position:
               
129-444
               

               
Cow position:
               
chr20:150597-150281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
112, 93
               

               
Conread position:
               
130-551
               

               
Cow position:
               
chr20:12195936-12196377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
23, 141
               

               
Conread position:
               
132-586
               

               
Cow position:
               
chr20:23331814-23332281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
133-345
               

               
Cow position:
               
chr20:24569626-24569404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
137-447
               

               
Cow position:
               
chr20:13672862-13673180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
67, 224
               

               
Conread position:
               
141-342
               

               
Cow position:
               
chr20:7848092-7847878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
190-484
               

               
Cow position:
               
chr20:15848866-15848569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
125-354
               

               
Cow position:
               
chr21:30158124-30158364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
125-585
               

               
Cow position:
               
chr21:26255188-26254710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
105, 10
               

               
Conread position:
               
127-586
               

               
Cow position:
               
chr21:33950368-33949911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 77
               

               
Conread position:
               
128-471
               

               
Cow position:
               
chr21:15276463-15276109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
113, 142
               

               
Conread position:
               
128-557
               

               
Cow position:
               
chr21:3605465-3605051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
234, 54
               

               
Conread position:
               
128-582
               

               
Cow position:
               
chr21:29634723-29634257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
128-589
               

               
Cow position:
               
chr21:2125298-2125763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
125, 333
               

               
Conread position:
               
128-589
               

               
Cow position:
               
chr21:18052167-18052638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 71
               

               
Conread position:
               
128-589
               

               
Cow position:
               
chr21:29907625-29908092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 227
               

               
Conread position:
               
130-580
               

               
Cow position:
               
chr21:9328634-9329061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
119, 23
               

               
Conread position:
               
130-587
               

               
Cow position:
               
chr21:40178526-40178047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
152-551
               

               
Cow position:
               
chr21:46338691-46338293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
112, 149
               

               
Conread position:
               
170-450
               

               
Cow position:
               
chr21:38240553-38240835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
70, 137
               

               
Conread position:
               
170-543
               

               
Cow position:
               
chr21:21476848-21477210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
301, 12
               

               
Conread position:
               
190-588
               

               
Cow position:
               
chr21:12466422-12466012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 9
               

               
Conread position:
               
190-588
               

               
Cow position:
               
chr21:36399791-36399387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
196-448
               

               
Cow position:
               
chr21:3927878-3928145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
6, 93
               

               
Conread position:
               
201-450
               

               
Cow position:
               
chr21:48964886-48964635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
105-558
               

               
Cow position:
               
chr22:10674221-10673749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 94
               

               
Conread position:
               
127-588
               

               
Cow position:
               
chr22:29893425-29892939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 78
               

               
Conread position:
               
128-544
               

               
Cow position:
               
chr22:41838871-41838458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 177
               

               
Conread position:
               
128-585
               

               
Cow position:
               
chr22:13290877-13290409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr22:33588024-33587554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 179
               

               
Conread position:
               
129-381
               

               
Cow position:
               
chr22:34149740-34150008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
129-556
               

               
Cow position:
               
chr22:8901917-8901477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 35
               

               
Conread position:
               
130-587
               

               
Cow position:
               
chr22:28315488-28315023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 75
               

               
Conread position:
               
135-510
               

               
Cow position:
               
chr22:37813209-37813608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
29, 250
               

               
Conread position:
               
142-588
               

               
Cow position:
               
chr22:8078967-8078521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
146-534
               

               
Cow position:
               
chr22:23657536-23657925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
332, 81
               

               
Conread position:
               
190-441
               

               
Cow position:
               
chr22:29643493-29643247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
190-563
               

               
Cow position:
               
chr22:22516868-22516486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
57, 182
               

               
Conread position:
               
190-588
               

               
Cow position:
               
chr22:8966593-8966996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
192-372
               

               
Cow position:
               
chr22:9723246-9723430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 93
               

               
Conread position:
               
193-588
               

               
Cow position:
               
chr22:17070687-17070297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 6
               

               
Conread position:
               
113-500
               

               
Cow position:
               
chr23:9014293-9014684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
117-476
               

               
Cow position:
               
chr23:22551882-22551526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
148, 14
               

               
Conread position:
               
127-554
               

               
Cow position:
               
chr23:8275563-8276007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
128-372
               

               
Cow position:
               
chr23:31626532-31626796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
124, 84
               

               
Conread position:
               
128-441
               

               
Cow position:
               
chr23:15999307-15998982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
125, 10
               

               
Conread position:
               
129-484
               

               
Cow position:
               
chr23:22639263-22639620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
123, 31
               

               
Conread position:
               
129-530
               

               
Cow position:
               
chr23:17290351-17290761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
134-477
               

               
Cow position:
               
chr23:6023478-6023127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
116, 19
               

               
Conread position:
               
172-537
               

               
Cow position:
               
chr23:37772741-37773123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 367
               

               
Conread position:
               
190-581
               

               
Cow position:
               
chr23:29811637-29811252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
192-402
               

               
Cow position:
               
chr23:5289095-5288881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
198-418
               

               
Cow position:
               
chr23:33027860-33027625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 108
               

               
Conread position:
               
200-544
               

               
Cow position:
               
chr23:281758-281398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 88
               

               
Conread position:
               
118-390
               

               
Cow position:
               
chr24:26713080-26713366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
127-422
               

               
Cow position:
               
chr24:37278554-37278258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
155, 70
               

               
Conread position:
               
128-543
               

               
Cow position:
               
chr24:25977815-25978231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
130-451
               

               
Cow position:
               
chr24:44552970-44552636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
116, 92
               

               
Conread position:
               
135-587
               

               
Cow position:
               
chr24:5891422-5891873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 64
               

               
Conread position:
               
148-580
               

               
Cow position:
               
chr24:33138984-33138543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
171-551
               

               
Cow position:
               
chr24:24025647-24025249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
96-447
               

               
Cow position:
               
chr25:14775510-14775161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
167, 34
               

               
Conread position:
               
128-407
               

               
Cow position:
               
chr25:4151037-4151326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
128-505
               

               
Cow position:
               
chr25:36798067-36798451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
134, 71
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr25:10374797-10375277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 325
               

               
Conread position:
               
129-550
               

               
Cow position:
               
chr25:4844836-4845280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
122, 70
               

               
Conread position:
               
130-554
               

               
Cow position:
               
chr25:15937404-15937845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 69
               

               
Conread position:
               
135-397
               

               
Cow position:
               
chr25:18475916-18476197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 144
               

               
Conread position:
               
155-586
               

               
Cow position:
               
chr25:18079481-18079046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 150
               

               
Conread position:
               
173-589
               

               
Cow position:
               
chr25:8905394-8904974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 124
               

               
Conread position:
               
190-422
               

               
Cow position:
               
chr25:26119431-26119680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
61, 118
               

               
Conread position:
               
190-546
               

               
Cow position:
               
chr25:28957232-28957604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
198-554
               

               
Cow position:
               
chr25:14843316-14843686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
54, 159
               

               
Conread position:
               
127-576
               

               
Cow position:
               
chr26:13850226-13850668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 14
               

               
Conread position:
               
128-256
               

               
Cow position:
               
chr26:19713085-19712957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
128-423
               

               
Cow position:
               
chr26:32830603-32830306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
105, 153
               

               
Conread position:
               
128-444
               

               
Cow position:
               
chr26:11529097-11528780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
117, 94
               

               
Conread position:
               
128-519
               

               
Cow position:
               
chr26:21218361-21218751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
122, 76
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr26:12397137-12397615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
113, 72
               

               
Conread position:
               
130-473
               

               
Cow position:
               
chr26:1351016-1351363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
116, 227
               

               
Conread position:
               
130-589
               

               
Cow position:
               
chr26:13831891-13832370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 97
               

               
Conread position:
               
143-588
               

               
Cow position:
               
chr26:10123720-10124179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 56
               

               
Conread position:
               
128-481
               

               
Cow position:
               
chr27:15423886-15424250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
128-586
               

               
Cow position:
               
chr27:15509552-15509073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
91-388
               

               
Cow position:
               
chr28:19190427-19190115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 264
               

               
Conread position:
               
128-415
               

               
Cow position:
               
chr28:4186414-4186122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
117, 31
               

               
Conread position:
               
128-542
               

               
Cow position:
               
chr28:23904291-23903883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
123, 75
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr28:4024066-4023589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
124, 71
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr28:22135331-22134864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 71
               

               
Conread position:
               
130-575
               

               
Cow position:
               
chr28:19360159-19360626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 438
               

               
Conread position:
               
131-419
               

               
Cow position:
               
chr28:27679445-27679142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
107, 102
               

               
Conread position:
               
131-588
               

               
Cow position:
               
chr28:676537-677007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 117
               

               
Conread position:
               
132-531
               

               
Cow position:
               
chr28:19600855-19601249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
119, 94
               

               
Conread position:
               
152-372
               

               
Cow position:
               
chr28:24583753-24583531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
187-394
               

               
Cow position:
               
chr28:15006081-15005879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
190-448
               

               
Cow position:
               
chr28:20974021-20974273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
190-578
               

               
Cow position:
               
chr28:22831566-22831183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
64, 143
               

               
Conread position:
               
191-587
               

               
Cow position:
               
chr28:14448820-14448403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
64, 191
               

               
Conread position:
               
192-555
               

               
Cow position:
               
chr28:26341406-26341767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 6
               

               
Conread position:
               
129-586
               

               
Cow position:
               
chr29:9462642-9463110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 68
               

               
Conread position:
               
130-582
               

               
Cow position:
               
chr29:18104007-18104456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 55
               

               
Conread position:
               
130-584
               

               
Cow position:
               
chr29:33128864-33128400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
132-588
               

               
Cow position:
               
chr29:37306962-37307435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 51
               

               
Conread position:
               
140-545
               

               
Cow position:
               
chr29:31906561-31906142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 92
               

               
Conread position:
               
201-441
               

               
Cow position:
               
chr29:37967420-37967177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
128-363
               

               
Cow position:
               
chr3:73512621-73512862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 49
               

               
Conread position:
               
128-375
               

               
Cow position:
               
chr3:77881440-77881700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 176
               

               
Conread position:
               
128-390
               

               
Cow position:
               
chr3:55887995-55888264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
128-443
               

               
Cow position:
               
chr3:9589250-9589581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
116, 305
               

               
Conread position:
               
128-444
               

               
Cow position:
               
chr3:77163678-77163352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
128-451
               

               
Cow position:
               
chr3:80117773-80117435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
114, 51
               

               
Conread position:
               
128-455
               

               
Cow position:
               
chr3:58764405-58764755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
128-476
               

               
Cow position:
               
chr3:11280223-11279865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
108, 236
               

               
Conread position:
               
128-532
               

               
Cow position:
               
chr3:58256496-58256081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
128-539
               

               
Cow position:
               
chr3:38739444-38739026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
128-577
               

               
Cow position:
               
chr3:17885727-17885265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
128-585
               

               
Cow position:
               
chr3:62343405-62343876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 234
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr3:29803314-29802839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 153
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr3:70702037-70701568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
167, 69
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr3:82186878-82187339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 62
               

               
Conread position:
               
128-589
               

               
Cow position:
               
chr3:165479-165005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
129-389
               

               
Cow position:
               
chr3:62992355-62992080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
129-486
               

               
Cow position:
               
chr3:73598055-73598416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
132-442
               

               
Cow position:
               
chr3:4465160-4465476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
119, 25
               

               
Conread position:
               
132-498
               

               
Cow position:
               
chr3:61701257-61701631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 170
               

               
Conread position:
               
133-584
               

               
Cow position:
               
chr3:31345848-31345408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
12, 117
               

               
Conread position:
               
134-588
               

               
Cow position:
               
chr3:8496706-8497176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 153
               

               
Conread position:
               
135-588
               

               
Cow position:
               
chr3:60267077-60267549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
148-455
               

               
Cow position:
               
chr3:3809307-3809622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
162-459
               

               
Cow position:
               
chr3:27667441-27667132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
190-557
               

               
Cow position:
               
chr3:44422112-44421726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr3:72377373-72377027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
64, 264
               

               
Conread position:
               
119-543
               

               
Cow position:
               
chr4:32301847-32301427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
127-422
               

               
Cow position:
               
chr4:26630638-26630949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
79, 147
               

               
Conread position:
               
128-451
               

               
Cow position:
               
chr4:30384736-30384408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 23
               

               
Conread position:
               
128-539
               

               
Cow position:
               
chr4:43070787-43070387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
125, 71
               

               
Conread position:
               
128-545
               

               
Cow position:
               
chr4:10490627-10491054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 179
               

               
Conread position:
               
128-566
               

               
Cow position:
               
chr4:8198199-8198640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
200, 103
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr4:42922168-42922638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 329
               

               
Conread position:
               
130-557
               

               
Cow position:
               
chr4:37180100-37180520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
131-487
               

               
Cow position:
               
chr4:33335633-33335272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
164, 80
               

               
Conread position:
               
134-441
               

               
Cow position:
               
chr4:57475907-57475594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
176-525
               

               
Cow position:
               
chr4:66546902-66547256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
77, 212
               

               
Conread position:
               
187-450
               

               
Cow position:
               
chr4:19235843-19236101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
120, 48
               

               
Conread position:
               
190-476
               

               
Cow position:
               
chr4:56176109-56175832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
190-589
               

               
Cow position:
               
chr4:11319620-11319220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
192-554
               

               
Cow position:
               
chr4:34347046-34347419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 7
               

               
Conread position:
               
199-429
               

               
Cow position:
               
chr4:25550057-25550282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 67
               

               
Conread position:
               
199-588
               

               
Cow position:
               
chr4:61840555-61840929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 102
               

               
Conread position:
               
127-451
               

               
Cow position:
               
chr5:4812087-4812403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
141, 32
               

               
Conread position:
               
128-451
               

               
Cow position:
               
chr5:4039745-4040077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
123, 51
               

               
Conread position:
               
128-553
               

               
Cow position:
               
chr5:18903916-18903498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 177
               

               
Conread position:
               
128-554
               

               
Cow position:
               
chr5:24538854-24539294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr5:35159779-35159300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
123, 45
               

               
Conread position:
               
130-476
               

               
Cow position:
               
chr5:61156365-61156022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
152, 137
               

               
Conread position:
               
130-587
               

               
Cow position:
               
chr5:45833338-45833809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 31
               

               
Conread position:
               
131-587
               

               
Cow position:
               
chr5:2710558-2711025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
132-377
               

               
Cow position:
               
chr5:48888501-48888767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 180
               

               
Conread position:
               
133-468
               

               
Cow position:
               
chr5:68392778-68393126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
121, 66
               

               
Conread position:
               
133-588
               

               
Cow position:
               
chr5:22770537-22770081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 89
               

               
Conread position:
               
134-531
               

               
Cow position:
               
chr5:70959415-70959820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
136-532
               

               
Cow position:
               
chr5:17554025-17553615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
102, 63
               

               
Conread position:
               
139-461
               

               
Cow position:
               
chr5:5989235-5988915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
154, 113
               

               
Conread position:
               
140-433
               

               
Cow position:
               
chr5:48474726-48474445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
161-561
               

               
Cow position:
               
chr5:880280-880699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
98, 187
               

               
Conread position:
               
174-589
               

               
Cow position:
               
chr5:68592614-68592209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
77, 67
               

               
Conread position:
               
190-446
               

               
Cow position:
               
chr5:31506812-31507064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 120
               

               
Conread position:
               
190-538
               

               
Cow position:
               
chr5:66859271-66859638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
191-584
               

               
Cow position:
               
chr5:5537734-5538137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 239
               

               
Conread position:
               
198-589
               

               
Cow position:
               
chr5:29676316-29675925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 101
               

               
Conread position:
               
98-451
               

               
Cow position:
               
chr6:56076098-56076459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
123-416
               

               
Cow position:
               
chr6:47776295-47775995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
138, 215
               

               
Conread position:
               
128-407
               

               
Cow position:
               
chr6:30789969-30790264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
128-434
               

               
Cow position:
               
chr6:60386626-60386336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
115, 37
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr6:21583643-21584128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 249
               

               
Conread position:
               
130-530
               

               
Cow position:
               
chr6:12433171-12433579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
95, 125
               

               
Conread position:
               
130-587
               

               
Cow position:
               
chr6:9207180-9207651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
131-445
               

               
Cow position:
               
chr6:63767480-63767790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
132-360
               

               
Cow position:
               
chr6:35062030-35062270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
98, 72
               

               
Conread position:
               
133-588
               

               
Cow position:
               
chr6:39095782-39096247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 66
               

               
Conread position:
               
191-532
               

               
Cow position:
               
chr6:41052887-41052555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
287, 61
               

               
Conread position:
               
125-588
               

               
Cow position:
               
chr7:9659398-9659862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
131, 73
               

               
Conread position:
               
128-247
               

               
Cow position:
               
chr7:30830086-30830205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
128-379
               

               
Cow position:
               
chr7:53234622-53234361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
128-419
               

               
Cow position:
               
chr7:10063167-10063460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
134, 179
               

               
Conread position:
               
128-445
               

               
Cow position:
               
chr7:6779564-6779238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
112, 69
               

               
Conread position:
               
128-446
               

               
Cow position:
               
chr7:13934040-13934364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
128-525
               

               
Cow position:
               
chr7:11058947-11058544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
117, 184
               

               
Conread position:
               
128-543
               

               
Cow position:
               
chr7:2622766-2622332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
128-589
               

               
Cow position:
               
chr7:43253803-43253338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 57
               

               
Conread position:
               
130-476
               

               
Cow position:
               
chr7:7514687-7514339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 173
               

               
Conread position:
               
131-412
               

               
Cow position:
               
chr7:11906691-11906399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
120, 29
               

               
Conread position:
               
131-539
               

               
Cow position:
               
chr7:28325862-28326296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
116, 218
               

               
Conread position:
               
132-517
               

               
Cow position:
               
chr7:4696201-4695820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
137-475
               

               
Cow position:
               
chr7:26184252-26184582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
108, 34
               

               
Conread position:
               
141-579
               

               
Cow position:
               
chr7:4893850-4894305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 49
               

               
Conread position:
               
144-448
               

               
Cow position:
               
chr7:8082613-8082317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
171-554
               

               
Cow position:
               
chr7:37972255-37972633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
191-588
               

               
Cow position:
               
chr7:51421306-51420895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
191-588
               

               
Cow position:
               
chr7:60218616-60218202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
49, 224
               

               
Conread position:
               
200-587
               

               
Cow position:
               
chr7:9612428-9612832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
108-582
               

               
Cow position:
               
chr8:40691328-40691806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 91
               

               
Conread position:
               
127-445
               

               
Cow position:
               
chr8:29291899-29292218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
127, 42
               

               
Conread position:
               
127-535
               

               
Cow position:
               
chr8:27975353-27975782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
127-586
               

               
Cow position:
               
chr8:4925698-4926156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 49
               

               
Conread position:
               
128-448
               

               
Cow position:
               
chr8:30553396-30553715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
152, 111
               

               
Conread position:
               
128-456
               

               
Cow position:
               
chr8:55545642-55545312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
126, 139
               

               
Conread position:
               
128-558
               

               
Cow position:
               
chr8:5513691-5514129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
139, 69
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr8:13151122-13150655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
123, 172
               

               
Conread position:
               
144-549
               

               
Cow position:
               
chr8:26672901-26672505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
77, 141
               

               
Conread position:
               
190-422
               

               
Cow position:
               
chr8:35358233-35358456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
111, 9
               

               
Conread position:
               
190-469
               

               
Cow position:
               
chr8:25797168-25797459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
191-588
               

               
Cow position:
               
chr8:55068325-55067900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 243
               

               
Conread position:
               
213-449
               

               
Cow position:
               
chr8:11685739-11685975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
49, 155
               

               
Conread position:
               
127-586
               

               
Cow position:
               
chr9:14798821-14798356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
128-389
               

               
Cow position:
               
chr9:52775400-52775127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
128-549
               

               
Cow position:
               
chr9:17354624-17355066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
75, 435
               

               
Conread position:
               
128-558
               

               
Cow position:
               
chr9:32408318-32408773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
115, 183
               

               
Conread position:
               
128-576
               

               
Cow position:
               
chr9:19902229-19902695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 147
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr9:19535170-19535638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
129-587
               

               
Cow position:
               
chr9:46358645-46358171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
190-365
               

               
Cow position:
               
chr9:52433887-52434071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 9
               

               
Conread position:
               
190-539
               

               
Cow position:
               
chr9:60818156-60818524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
56, 8
               

               
Conread position:
               
206-535
               

               
Cow position:
               
chr9:16210531-16210184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
46, 275
               

               
Conread position:
               
126-589
               

               
Cow position:
               
chrX:35566275-35566763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 264
               

               
Conread position:
               
127-423
               

               
Cow position:
               
chrX:35678149-35678447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
199, 136
               

               
Conread position:
               
127-586
               

               
Cow position:
               
chrX:43788769-43789231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 34
               

               
Conread position:
               
128-448
               

               
Cow position:
               
chrX:14297246-14297579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
85, 70
               

               
Conread position:
               
128-519
               

               
Cow position:
               
chrX:46055704-46055292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
57, 71
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chrX:16228897-16229360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
130-415
               

               
Cow position:
               
chrX:26610338-26610037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
130-422
               

               
Cow position:
               
chrX:20541720-20541419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
130-451
               

               
Cow position:
               
chrX:37411871-37411548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
167, 69
               

               
Conread position:
               
130-453
               

               
Cow position:
               
chrX:20178164-20178477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
122, 72
               

               
Conread position:
               
132-588
               

               
Cow position:
               
chrX:12101959-12102430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
134-525
               

               
Cow position:
               
chrX:8102563-8102960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
94, 98
               

               
Conread position:
               
138-415
               

               
Cow position:
               
chrX:5666752-5667038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
144-482
               

               
Cow position:
               
chrX:26276722-26277053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
170-385
               

               
Cow position:
               
chrX:23547605-23547834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
170-589
               

               
Cow position:
               
chrX:13226263-13225841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
57, 124
               

               
Conread position:
               
176-512
               

               
Cow position:
               
chrX:16989008-16988675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
241, 16
               

               
Conread position:
               
190-589
               

               
Cow position:
               
chrX:31275354-31275776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
192-462
               

               
Cow position:
               
chrX:27210831-27210562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
105, 7
               

               
Conread position:
               
199-554
               

               
Cow position:
               
chrX:15341021-15341385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
49, 90