Cow genome map
| Conread name: | Pig3-SRG8005A05 |
| Conread position: | 180-622 |
| Cow position: | chr10:47700005-47700459 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 78 |
| Conread position: | 261-602 |
| Cow position: | chr10:13867210-13866872 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 276-463 |
| Cow position: | chr10:61470171-61469990 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 280-434 |
| Cow position: | chr10:14821411-14821255 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 299-637 |
| Cow position: | chr10:11819781-11819431 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 167 |
| Conread position: | 312-594 |
| Cow position: | chr10:14083806-14084086 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 312-614 |
| Cow position: | chr10:6855240-6855557 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 385-641 |
| Cow position: | chr10:2172139-2171878 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 93, 70 |
| Conread position: | 216-638 |
| Cow position: | chr11:5434740-5434320 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 248-467 |
| Cow position: | chr11:10818500-10818715 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 114, 51 |
| Conread position: | 283-490 |
| Cow position: | chr11:13437291-13437494 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 283-625 |
| Cow position: | chr11:28151745-28152080 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 284-599 |
| Cow position: | chr11:31528219-31528535 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 300-608 |
| Cow position: | chr11:76274648-76274335 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 143, 177 |
| Conread position: | 300-622 |
| Cow position: | chr11:16670227-16670558 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 159, 133 |
| Conread position: | 312-639 |
| Cow position: | chr11:41568565-41568229 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 142, 49 |
| Conread position: | 334-651 |
| Cow position: | chr11:42557648-42557962 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 38, 8 |
| Conread position: | 356-599 |
| Cow position: | chr11:74208272-74208018 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 385-578 |
| Cow position: | chr11:54637589-54637392 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 91, 56 |
| Conread position: | 283-577 |
| Cow position: | chr12:30768456-30768761 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 169, 64 |
| Conread position: | 317-622 |
| Cow position: | chr12:9569802-9570100 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 140, 35 |
| Conread position: | 321-637 |
| Cow position: | chr12:15880907-15881238 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 129, 209 |
| Conread position: | 248-597 |
| Cow position: | chr13:34689301-34689658 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 277-622 |
| Cow position: | chr13:6077292-6076944 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 283-625 |
| Cow position: | chr13:16144650-16144306 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 280-619 |
| Cow position: | chr14:18531700-18532046 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 90, 124 |
| Conread position: | 302-531 |
| Cow position: | chr14:40133821-40134057 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 66, 101 |
| Conread position: | 412-593 |
| Cow position: | chr14:8025501-8025315 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 317-576 |
| Cow position: | chr15:15934956-15935210 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 154, 5 |
| Conread position: | 317-637 |
| Cow position: | chr15:7290937-7291258 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 193, 46 |
| Conread position: | 179-577 |
| Cow position: | chr16:19158180-19157777 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 179-589 |
| Cow position: | chr16:52253728-52253319 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 65 |
| Conread position: | 248-462 |
| Cow position: | chr16:31367840-31367629 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 100, 30 |
| Conread position: | 248-625 |
| Cow position: | chr16:32376824-32376445 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 302-608 |
| Cow position: | chr16:15981970-15982265 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 283-618 |
| Cow position: | chr17:9857582-9857929 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 333-621 |
| Cow position: | chr17:37153504-37153206 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 122, 50 |
| Conread position: | 277-575 |
| Cow position: | chr18:39459592-39459891 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 89, 20 |
| Conread position: | 179-577 |
| Cow position: | chr19:20521586-20521978 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 283-637 |
| Cow position: | chr19:12782597-12782239 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 99, 139 |
| Conread position: | 312-620 |
| Cow position: | chr19:44134588-44134899 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 328-578 |
| Cow position: | chr19:38453702-38453437 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 313-652 |
| Cow position: | chr20:12533541-12533181 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 142, 66 |
| Conread position: | 317-599 |
| Cow position: | chr20:7824068-7823775 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 197 |
| Conread position: | 344-567 |
| Cow position: | chr20:5899188-5899413 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 166 |
| Conread position: | 213-636 |
| Cow position: | chr21:40797582-40797157 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 145, 35 |
| Conread position: | 280-566 |
| Cow position: | chr21:39594605-39594902 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 281-607 |
| Cow position: | chr21:21234060-21234396 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 286-604 |
| Cow position: | chr21:46676997-46677316 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 156 |
| Conread position: | 320-619 |
| Cow position: | chr21:10758982-10759278 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 187, 6 |
| Conread position: | 334-622 |
| Cow position: | chr21:29760545-29760243 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 322-597 |
| Cow position: | chr22:27519095-27518808 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 301-659 |
| Cow position: | chr23:33594956-33595303 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 210, 22 |
| Conread position: | 179-655 |
| Cow position: | chr24:5877247-5876780 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 177, 34 |
| Conread position: | 388-604 |
| Cow position: | chr24:36165311-36165095 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 317-644 |
| Cow position: | chr25:5433588-5433900 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 204-459 |
| Cow position: | chr26:29086277-29086029 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 152, 9 |
| Conread position: | 317-601 |
| Cow position: | chr26:9223337-9223048 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 317-608 |
| Cow position: | chr26:16606259-16606556 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 290-592 |
| Cow position: | chr27:21384012-21383686 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 225 |
| Conread position: | 363-614 |
| Cow position: | chr27:5349334-5349084 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 143 |
| Conread position: | 258-625 |
| Cow position: | chr28:4580094-4579721 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 280-465 |
| Cow position: | chr28:7320036-7319849 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 308-540 |
| Cow position: | chr28:7071986-7072214 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 177, 30 |
| Conread position: | 258-668 |
| Cow position: | chr29:8414640-8414217 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 374-599 |
| Cow position: | chr29:5353061-5352837 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 137, 13 |
| Conread position: | 24-702 |
| Cow position: | chr8:4635218-4635881 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 82 |
| Conread position: | 179-601 |
| Cow position: | chr8:55078443-55078881 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 210-648 |
| Cow position: | chr8:33033978-33034391 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 140, 13 |
| Conread position: | 253-640 |
| Cow position: | chr8:34539844-34540224 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 280-590 |
| Cow position: | chr8:28054224-28053909 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 92, 51 |
| Conread position: | 279-622 |
| Cow position: | chr9:32881081-32880731 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 280-600 |
| Cow position: | chr9:9468734-9469062 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 31 |
| Conread position: | 280-621 |
| Cow position: | chr9:8437828-8438183 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 313-571 |
| Cow position: | chr9:28732354-28732613 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 146 |
| Conread position: | 313-632 |
| Cow position: | chr9:37001144-37000828 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 179-633 |
| Cow position: | chrX:32815806-32815348 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 310 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 34, 107 |
| Conread position: | 208-578 |
| Cow position: | chrX:42431910-42432279 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 263, 18 |
| Conread position: | 297-625 |
| Cow position: | chrX:29365255-29365591 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 41 |
| Conread position: | 365-625 |
| Cow position: | chrX:27150523-27150254 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 90, 66 |